Gene detail

Detailed information of scaffold1150.g3.t5 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1150:30538...49614
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1150.g3.t5

cttgaacatggctgcttgtgttttggtgtcatgagggacctatcctgctcgatattgtgaccagtttttattgcgaaataccaatttcatattaattgaataacatattcatcgaatttaacctttggttatgggaatccagactgaattggctttgcaatttgtttagaagtggctttaaacggagcacaacaacggtgggcagttggttggcctacngacacgaatcgactaaagtttgcatatgccccctttgggcatcaagccacccacccgttgtgacgtatttcctctacaagtgcccaaccctctttagctgatagaagaaccttgaacatggctgcttgtgttttggtgtcatgagggagctatcctgctcgatattgtgaccagtttttattgcgaagtaccaatttcatattaattgaataacatattcatcgaatttaacctttggttattggaatccaggctgaattggctttgcaatttgtttagaagtggctttaaacggagcacaacaacggtgggcagttggttggcctactttcctaaccttgacggtgtggacgatttccgattgactggaattcagaaggagattattaacattttatgaccattgcacagacgttcattaaaaaggcagtcaaggggttaaaggcaaaggcatttgctgtaatacactgttatggacttagttaagtaaaaacaagtgagaatagagaaaaagtgacgccgatatttgtaggccatcgcggcagattcagttcacttccgatcaagcagacatcaggccgctctcaagaattcaataaatttcttttatttgtgaaacaaggagggttcttagcaaaatagttgtgagtgtacaataacgacacatgacatccattgcagtaagagcatattaagattttatagacactacaagaaaggaattatttgtgagttattggagaggattttatttggttagatcgatgcgaatgaatcatggcagtcggagatgaggtcgaagtggagcacgcagaactcgtcgccgaattagcaaaactcgagcagttgtcagccgaagaacgattaaaagcagccagaaaacgaaggctttcacagctcaatcgatataaagttactgtggaaactgagaagttgtttcctcctattcaaaaaccaaataaaggcaggcctatccggttcgaagaaagtgtgactttgattgaagcatcagccaggaatgatgcagaagaagttgcaaagtttttgaagaatggaatgagtcctgacttgcaaaatcaagatggtttgagtgctttgcatcaggctgttatagaagattgtgatgatgtagtccatgttcttattgaaggcggtgccaacttgaacataaaagatgctgatctctggacaccactgcatgctgctgttgcttgtgggaattatgacctggtgaaatatttgaatgaaaaaggagcagatctcgttgctataaatgcagatggtaatatgccaattgatttggttgatgagaatgaagatattgagatgtatttggatagtcagatgactgagaaagcccttttccagttatacattgtcaatattaaaaatgtaaccatgaatagaattttatcacctgacgtggcngttgcttgtgggaattatgacctggtgaaatatttgaatgaaaaaggagcagatctcgttgctataaatgcagatggtaatatgccaattgatttggttgatgagaatgaagatattgagatgtatttggatagtcagatgactgagaaaggatttactgaaggtcagctagaaagtattcgcaatgcagttgcagaggagatgatgctggatttgagagacagtgtacaaaagggcagagatttagatgtacctgatgatggtggtgctactgctgtaagatttactgaaggtcagctagaaagtattcgcaatgcagttgcagaggagatgatgctggatttgagagacagtgtacaaaagggcagagatttagatgttcctgatgatggtggtgctactgctatgcacatagcggcagccaatggttatctagaagtaattgaattcttgctggacaatggtgcaaagctggacaccaaagacaaagatggttggcaacctatccatgcagcatcttgctggggtcaggacactgcaatcgagatattatttgaccatggagctgatcttgatgctagaactaacgataacgagtctccatttgatgtaactgaagacgaggaactaattgaaataatgaaagaactcagagattctggccgcaaaattccgaaatcggttaaaagaagtcaaagtaacagctcgagatcgctttgtgttagaaggcttagtttggttgacaaacatcaaacttcaaagaatgatgcaatgaacgagggtatgttcttccaaaagccagaagtgatgaatgtcatgattaacgctgacaatgcagaggaagacgaagagcaaaaacgagaaagcctgaaacgcccgaataaaaacactgaagagcaggataaaccgaaagagaaactcatccccgccccgcttcgaccgccgtccttgaaccgccattcaggggatcattctgaaacaccacaacagtcaactcctgctgttatcgaagtaaccagtcatgaaaaaactaaccataatgatacaaaggctcctgttgaccaagcggcagtgactatcacgataggtgacaataacaagcaagaagagacgggatcagagccacatctggtctcttacaaaaaagtagcgtctccatcaccagcaaccgctcctatggcggatccggaagtggattcccccgttaagaaaaggccgatggaagccgaacgaccaagaaacacagccgccatgaacgacgaaaagactgaaaatgatacagaaaataagcatacatctgacgatgctcgtaacggtaaaatagctgtgaaggacggcactactgttcataaaaaatgttgcgttattctgtgatgtaatgattttagttacttatacaaatcatagtcgatcgatatctgaggacaacacattgaaatcatgtcgccgataaggaaagcaagcatccatgctgatttcaaatcgcattaggaacagcaactgtattttattgaagatgcactacagattaagacgttatgctaatgtgcagtgtgactaaagacagcagtaagaagaaattctgttcccaggaagaggcttcccccatattctccttacccaaatacaaataggcccttttctaagtggtttaaacgacggattgttgttgaattgcaaacacggcaaagacgacataaagcctgcaagcctat

Transcript

scaffold1150.g3.t5

CTTGAACATGGCTGCTTGTGTTTTGGTGTCATGAGGGACCTATCCTGCTCGATATTGTGACCAGTTTTTATTGCGAAATACCAATTTCATATTAATTGAATAACATATTCATCGAATTTAACCTTTGGTTATGGGAATCCAGACTGAATTGGCTTTGCAATTTGTTTAGAAGTGGCTTTAAACGGAGCACAACAACGGTGGGCAGTTGGTTGGCCTACNGACACGAATCGACTAAAGTTTGCATATGCCCCCTTTGGGCATCAAGCCACCCACCCGTTGTGACGTATTTCCTCTACAAGTGCCCAACCCTCTTTAGCTGATAGAAGAACCTTGAACATGGCTGCTTGTGTTTTGGTGTCATGAGGGAGCTATCCTGCTCGATATTGTGACCAGTTTTTATTGCGAAGTACCAATTTCATATTAATTGAATAACATATTCATCGAATTTAACCTTTGGTTATTGGAATCCAGGCTGAATTGGCTTTGCAATTTGTTTAGAAGTGGCTTTAAACGGAGCACAACAACGGTGGGCAGTTGGTTGGCCTACTTTCCTAACCTTGACGGTGTGGACGATTTCCGATTGACTGGAATTCAGAAGGAGATTATTAACATTTTATGACCATTGCACAGACGTTCATTAAAAAGGCAGTCAAGGGGTTAAAGGCAAAGGCATTTGCTGTAATACACTGTTATGGACTTAGTTAAGTAAAAACAAGTGAGAATAGAGAAAAAGTGACGCCGATATTTGTAGGCCATCGCGGCAGATTCAGTTCACTTCCGATCAAGCAGACATCAGGCCGCTCTCAAGAATTCAATAAATTTCTTTTATTTGTGAAACAAGGAGGGTTCTTAGCAAAATAGTTGTGAGTGTACAATAACGACACATGACATCCATTGCAGTAAGAGCATATTAAGATTTTATAGACACTACAAGAAAGGAATTATTTGTGAGTTATTGGAGAGGATTTTATTTGGTTAGATCGATGCGAATGAATCATGGCAGTCGGAGATGAGGTCGAAGTGGAGCACGCAGAACTCGTCGCCGAATTAGCAAAACTCGAGCAGTTGTCAGCCGAAGAACGATTAAAAGCAGCCAGAAAACGAAGGCTTTCACAGCTCAATCGATATAAAGTTACTGTGGAAACTGAGAAGTTGTTTCCTCCTATTCAAAAACCAAATAAAGGCAGGCCTATCCGGTTCGAAGAAAGTGTGACTTTGATTGAAGCATCAGCCAGGAATGATGCAGAAGAAGTTGCAAAGTTTTTGAAGAATGGAATGAGTCCTGACTTGCAAAATCAAGATGGTTTGAGTGCTTTGCATCAGGCTGTTATAGAAGATTGTGATGATGTAGTCCATGTTCTTATTGAAGGCGGTGCCAACTTGAACATAAAAGATGCTGATCTCTGGACACCACTGCATGCTGCTGTTGCTTGTGGGAATTATGACCTGGTGAAATATTTGAATGAAAAAGGAGCAGATCTCGTTGCTATAAATGCAGATGGTAATATGCCAATTGATTTGGTTGATGAGAATGAAGATATTGAGATGTATTTGGATAGTCAGATGACTGAGAAAGCCCTTTTCCAGTTATACATTGTCAATATTAAAAATGTAACCATGAATAGAATTTTATCACCTGACGTGGCNGTTGCTTGTGGGAATTATGACCTGGTGAAATATTTGAATGAAAAAGGAGCAGATCTCGTTGCTATAAATGCAGATGGTAATATGCCAATTGATTTGGTTGATGAGAATGAAGATATTGAGATGTATTTGGATAGTCAGATGACTGAGAAAGGATTTACTGAAGGTCAGCTAGAAAGTATTCGCAATGCAGTTGCAGAGGAGATGATGCTGGATTTGAGAGACAGTGTACAAAAGGGCAGAGATTTAGATGTACCTGATGATGGTGGTGCTACTGCTGTAAGATTTACTGAAGGTCAGCTAGAAAGTATTCGCAATGCAGTTGCAGAGGAGATGATGCTGGATTTGAGAGACAGTGTACAAAAGGGCAGAGATTTAGATGTTCCTGATGATGGTGGTGCTACTGCTATGCACATAGCGGCAGCCAATGGTTATCTAGAAGTAATTGAATTCTTGCTGGACAATGGTGCAAAGCTGGACACCAAAGACAAAGATGGTTGGCAACCTATCCATGCAGCATCTTGCTGGGGTCAGGACACTGCAATCGAGATATTATTTGACCATGGAGCTGATCTTGATGCTAGAACTAACGATAACGAGTCTCCATTTGATGTAACTGAAGACGAGGAACTAATTGAAATAATGAAAGAACTCAGAGATTCTGGCCGCAAAATTCCGAAATCGGTTAAAAGAAGTCAAAGTAACAGCTCGAGATCGCTTTGTGTTAGAAGGCTTAGTTTGGTTGACAAACATCAAACTTCAAAGAATGATGCAATGAACGAGGGTATGTTCTTCCAAAAGCCAGAAGTGATGAATGTCATGATTAACGCTGACAATGCAGAGGAAGACGAAGAGCAAAAACGAGAAAGCCTGAAACGCCCGAATAAAAACACTGAAGAGCAGGATAAACCGAAAGAGAAACTCATCCCCGCCCCGCTTCGACCGCCGTCCTTGAACCGCCATTCAGGGGATCATTCTGAAACACCACAACAGTCAACTCCTGCTGTTATCGAAGTAACCAGTCATGAAAAAACTAACCATAATGATACAAAGGCTCCTGTTGACCAAGCGGCAGTGACTATCACGATAGGTGACAATAACAAGCAAGAAGAGACGGGATCAGAGCCACATCTGGTCTCTTACAAAAAAGTAGCGTCTCCATCACCAGCAACCGCTCCTATGGCGGATCCGGAAGTGGATTCCCCCGTTAAGAAAAGGCCGATGGAAGCCGAACGACCAAGAAACACAGCCGCCATGAACGACGAAAAGACTGAAAATGATACAGAAAATAAGCATACATCTGACGATGCTCGTAACGGTAAAATAGCTGTGAAGGACGGCACTACTGTTCATAAAAAATGTTGCGTTATTCTGTGATGTAATGATTTTAGTTACTTATACAAATCATAGTCGATCGATATCTGAGGACAACACATTGAAATCATGTCGCCGATAAGGAAAGCAAGCATCCATGCTGATTTCAAATCGCATTAGGAACAGCAACTGTATTTTATTGAAGATGCACTACAGATTAAGACGTTATGCTAATGTGCAGTGTGACTAAAGACAGCAGTAAGAAGAAATTCTGTTCCCAGGAAGAGGCTTCCCCCATATTCTCCTTACCCAAATACAAATAGGCCCTTTTCTAAGTGGTTTAAACGACGGATTGTTGTTGAATTGCAAACACGGCAAAGACGACATAAAGCCTGCAAGCCTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR051226 all species →	Family	Protein Phosphatase 1 Regulatory Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24179 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004857 all species →	Molecular Function	enzyme inhibitor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019208 all species →	Molecular Function	phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1150.g3.t5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.