Gene detail

Detailed information of scaffold116.g21.t1 in Morbakka virulenta

Genomic Location: scaffold116:905220...1021228
NR annotation: XP_024115506.1, collagen alpha-1(XI) chain [Oryzias melastigma]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold116.g21.t1

GGCGAGTCTGTTGGTCCGCGGCTGTGGTGTTTACCCCGGAGCGGTTTTGAAGGATACTAATATGTCATCCACAGGCAGAGGCAGGGATATTGTTGGTTTTTCATCTGAGATATTGTTGTGATTTACCTCTGAATGTTTGTTCGTTGGGAGTAAAAGTCGCATGTCTTTGTCGGTAGAGTGTAACTGACAAAGCAATGCGTTGCAGCTATGGAAGATCTCGGTCACTCAGTATAAAGGAGAACTCTAGTAAGTCAGGGATATGTTTATTATGGAGTGCTATCATGAAGTTTGAATGGAACTGCAAACTTTGGTTGTCCTTTTCTTTGATCGTTACTTTCAGCTGTACGGCATTCTCCCTTCCAGATCAAATGTCGAGGAGACAAGATGCAACAGACCTCATTGAATACTTAGGTATCCGAGGCCATGAGTTCAAGGAATTTCAAGGCTTTGTGACTCCAACTGTGGGAATGTGCAAAAAAAGACCAGGAATCGGAAGTGAAACCACTAGATCAGATGTTGGCTTTATATTTAATCGTTCAGTAGTTGTTGCAAACAGCCTTGGAGTTTTAGGGATGAATACGCATGTTAACAGCCTTTCAGTACTTGCTCTCTTAAAAGTCAGTCCTGGATCAACGGCAGACTTGATTCGTTTCAGGTCATTGGATGGCGCATTATTATTTGGAATTAAAGTAGGTGACAAGACCTTGCTGGAATTTACAAATGCAGGTGTAAAGGAATCTGTTGCGTTTTCAGTTTCACTTGCTGACGATGATTGGCACAGGATGGCTGTATATTTTAGTCAAGGCCAAGTTACGTTTTACTTGGACTGTGATTTTTACGAGACAATTCCTCTGCCTGATACCTTTGTGTTGGAGAGGTTGCCAGATGATGGGCAAGTAACAGTTGGTTATGATGTCAGTGATGGAGAGAACAAGCTTGCAATTCAAGTTTTGCTTGTAGGGTCATCCGAAGACCCTAGCACTCATTGTCAGGATTTCATGCCAGATTGTAACATGCCATTACCAAGGCCTTTTCAGCCCACAAAACCAAGTCTGCGTGCACCTTCTGCAACACAAACTTCAAAAAGTACCCAGAAAGAAACGTACGACTCACGAGGACGCACAAAGGAAATCATTGGGCCGCCGGGAAGTAAAGGTCAGAAAGGAGAAAGGGGACAGGAAGGTAGACAGGGCTATCCAGGACAGCGTGGACCACCGGGTGAAAAGGGAAAAGCAGGAAAAATGGGAAGAAGAGGTGAAGTAGGTCAACGAGGACTGATAGGACCAAAAGGAGATATGGGCGAGAGAGGTATGGATGGCTTTCCAGGAGAGCCAGGCCTGCAAGGACAAAGGGGTGATCCAGGACCACAAGGACCTTCCGGTGAACGAGGCTTACAAGGACCACCAGGCAGCGTTGGAGCAATGGGAGAACCAGGAAAACAGGGCTTGCCAGGCCCAATCGGACCACCTGGTGCTACTGGACCAGAAGGAGCACGAGGCAGCGAGGGTTTACCAGGCGAACTAGGACCTCCAGGTCGGGATGGCCCACTGGGGCCGCCTGGATCTTTGGGACCAAGAGGAGTTCCGGGTCTGAAGGGGCCGCCTGGATCTTTGGGACCAAGAGGAGTTCCGGGTCTGAAGGGAGACCCTGGCGGTATAGGCCCACCTGGATCGAATGGAGCTGATGGAATGCCGGGACATCCAGGAGAAGAAGGACCTCAAGGTGAAAAAGGAAATGTTGGTAGCAATGGTCGACTTGGACCGCGAGGCTATCATGGACCACGTGGATGGAAGGGATCAAGAGGAAAAAGGGGACCTCAAGGCGAAAAAGGTTATCCAGTATgcgagtcacaactaatgacctagggctaataaggtactttctcctatctttcacatctcaagaacttttcttaggattctagctgttcctaataaagcggtcttctgcatgtccactatgttaggttcaatattcaatttttgaacccaatttttaaaccctttgctgacacttcctaatgctcctatcacaacaggaatcacctgcaccttcttcaaaccccaaagccttcccatctccctcttcaagtcttgatatttttcaaccttttccttttccttgtcttcgattcttttatctgctggaacggcaatgtcgattatgaagcaagatttctgctttttatcaatcaaaacaatgtctggccttcttgcctctattacattgtcgcattgaatattgatgtcccacagaatctttacttcttcactttctatcgcaccttcaggggaatgttcgtaccacttttcctgatgttctagcccgtttttcttgcatagatcccagtgaatccgttttgcaacaccgtcgtgtcttcgtttata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR048287	Domain	Thrombospondin-like, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan