Gene detail

Detailed information of scaffold1174.g1.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1174:17329...24174
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1174.g1.t2

gtccttttgttgtttctttttgatatttacttttttatatttatttactttatatagccagaaaattgatgttgccttcagcaaaaaaagtcgatcaaatcattgaaaaaatcaatcttgaattagagcctaactcgtttgaaaccacttgccataacgatagcaaaatatgtaccatctgccaaaaacgtgttcataaaaatcaaaaagccactacttgcagtcaatgcaaacacgaaatccatattaaatgcaatgacatctcaccatcttcatatgcatctcttgaggaaaaaactcttgactgcctagcctgtacagttcttactaactcacaaatgtttccattcaccttagtaactgatgagattctgtttggaacaaatgttactgatctaccttccatagttgattctcttccaactctagaaatgctctcaaagctacaaaaccttcctaacctttctgattatgatattgatgagaatattgagcctgacataaactgtaattactacaatgtttcagaactgcaatctctggaaacctcagcaaatgatttctcagtcctgcatatgaatataaggagcctttcactccattttgatgaactttttgctctcttgggaaacattggtattgacttccaactcattggtctttctgaaatcaaggagtctgttgaactgcccatctcaacaaatattgaccttcctgggtacaaattccactatacctcctcccagagtgctgctggaggtgttggtatttatgttaagtcagtccttaaagctaacaagagactagaccttagtattagttcatgtgaatatgagacagtctggattgaaattgagaatgctaaatccaagaacattctatgttgctgtgcttaccgtcatccaagctctgacatcaatgcctttattgaccacatgcaagaagtcttgtccaaggttgccaatgaaaataaaattgctgtcattatgggggacttcaacataaatctactaaattctgagaatcacacactcactagtgaatttatcaatgctatgttttccaaccacttccagccacttatacttcaaccaaccagggtaactgattcaacagcaacgctcattgataacatcttttctaatgatttatcttgtaaggtaacaagtggaaatgtcctagtacaaatttccgatcacttccctcagttttctattttcaataactctgctcctgactataataactcttcttactgtgtttataattacaaaaattttgatgaatcaaaattccttgatgactatcaaaaaatggattttgcatttctaaatactgatgatcatactgttgaccataaatttgatcaattcctaactaacctcaaccagcttgttgaaaaacattgtccaaaaaagaaattaaacaaaaaatcgttgaaactaagaaacaaaccatggattaacaaccaaatccaacatatgatgagggtcagagacagaattttccagcagttcaaacatacagaatcctctgaagtttatgcccattataaactatttcgtaatcgtgttgttaatgagataaaagaaagcaaaaaaagttactttcaacattattttgctgaaaacaaatcaaatatgaagttactctggaaggggatcagaagtgtgataaaaatgaaaagtaatggcggtgaaacaaattcgatcccattcataactaatgagaatggtaataagataaccgatcctaacttaattgccaacaactttaatgactattttatcaatgttgctaacaaaattacaagtaaaatccctaggaactcaaattctcctctaagatatctagcttcttctaataacagctgcttctttatatctcccactgttcctgttgaggtttctttgataatccagtcacttaagaagggtaaatctactgggcctaatagtattccagtcaaactattgaaagttcttgacccacacatttccatacagctctctcaaatcatcaatgaatcatttctaaatggtatctttcctgataaactaaagattgctaaagttattcctattttcaaaaaaggtgatgcctccaagaattcaaattacagacccatctctttgctgtcagtatttagtaagatctttgaaaagctcatgcatcaacgcttgtacaattttctagaacttcgtgggatcctgtttcaaatgcaatttggattccgcaatggtcattccactgatcatgcattgatcagtttaagtgagagaattaaatctactttggactcaaaaagaattggctgtgggatctttattgacctgcaaaaagcctttgatactgtcaaccataacattctactacaaaaacttagtcactatggaataagaggctcagcactgcactggtttgagtcctaccttacggaaagacttcaatatgtttcaatcaacaatcattcttctagtcttagcaaagttacttgtggtgttcctcagggctctgtacttggtccattactgtttctaatctatatcaatgaccagcctaatgtatccaaagtgctttctttcttcttgtttgcagatgatgcaggtgtttattttcaaactggaagtgttgcagggcttcggtgtggaatcaataaagagctgataggggtgaggtcgtggcttgaagttaatagattagctctgaacattgaaaaaacaggctttgttgtgtttcactcccctggagggggattgcctgggcgtattcttgttgaatttgaggacgaaatcgacgtcgttggcgttcctgaacgaccgaaaccaaaacaagcggactcttcaaccgagaagcgagtacttctaacgacagacaaatcaaatctgacgaatagcataccaaactcatcgtcctgcaatgcttcaccaaattcatcggacactgacgactcttcctccggtcggactcgaaacttcggtccacacgggagagtttcccataatgatctcgaaagaaaacgacgtgatgaactcaagcggaaatttgattgcctccgagcagcggttcctgagttagaatcgaacgaaagagcgcctaaagtcgttatattaaaaaaggcagcgttatgcgtgcctcgacttgaaaacgaggagcaagcattggtaatggaaaaagagaacttgaaaagggtgaattcactgctaatgcaaaaactgttactacttgtgaaaacaaggtagacaaccttaacttatatttgttttcaatttgagtgtatattttgtaagtaaaatgattgataattatatttatagctttgtttagataaagctttgcatttttgacgttctaagtatcttattaattcaaaagtaaattgtaatatttagtttcatctgcgtattggggcatacgcttcaaatagttcaaactggttacgacctctttctttcgttaacttttgtgatatcttgattgtcttcaaaggtacagcgttttcttaggacctgttcatatggagacgagccagcccgcttaccgggctggcccgctaagtgagctgatttcgcattctgttcatatggcaaatacatcccgcctaccgggatggaattggtcacgtgccatcgttggtggtattgttttgcatgcccacgcgtgcgtagtagaggcgttttcgtttcggcaggcgagctggagtgttcatatgggaaaattttgacctcgccaagcgggatctcggcattacttgagtgagatctcgcctaccgggccagcccgcctgctcatatgaacagacaacaaactttgaatgggaaacagggataaggtgagatctcggcaaaaacctccagcccggtaggcgggctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcccgcctaccgggatggaattggtcacgtgccatcgttggtggtattgttttgcatgcccacgcgtgcgtagtagaggcgttttcgtttcggcaggcgagctggagtgttcatatgggaaaattttgacctcgccaagcgggatctcggcattacttgagtgagatctcgcctaccgggccagcccgcctgctcatatgaacagacaacaaactttgaatgggaaacagggataaggtgagatctcggcaaaaacctccagcccggtaggcgggctggctcgcctccatatgaacaggtccttatattccaacttgtttgagcttgcaaaatcatcagatctttaaatttgtaaaccagaagaacgtcaagagtctgctcacaaccatgttatatgtcttcataatctttggttttatcaacaattcaagcatgtttgctcaaatgattataacattacgcttgttttctgtttttcaaaacttatataaaaccctgtaattttgaaaatatcaataatgtcaataaaattcatggtagaatacagcaaagcacctaatgtctctttcgatcaattcaatcccaagaaagatattataaatgc

Transcript

scaffold1174.g1.t2

GTCCTTTTGTTGTTTCTTTTTGATATTTACTTTTTTATATTTATTTACTTTATATAGCCAGAAAATTGATGTTGCCTTCAGCAAAAAAAGTCGATCAAATCATTGAAAAAATCAATCTTGAATTAGAGCCTAACTCGTTTGAAACCACTTGCCATAACGATAGCAAAATATGTACCATCTGCCAAAAACGTGTTCATAAAAATCAAAAAGCCACTACTTGCAGTCAATGCAAACACGAAATCCATATTAAATGCAATGACATCTCACCATCTTCATATGCATCTCTTGAGGAAAAAACTCTTGACTGCCTAGCCTGTACAGTTCTTACTAACTCACAAATGTTTCCATTCACCTTAGTAACTGATGAGATTCTGTTTGGAACAAATGTTACTGATCTACCTTCCATAGTTGATTCTCTTCCAACTCTAGAAATGCTCTCAAAGCTACAAAACCTTCCTAACCTTTCTGATTATGATATTGATGAGAATATTGAGCCTGACATAAACTGTAATTACTACAATGTTTCAGAACTGCAATCTCTGGAAACCTCAGCAAATGATTTCTCAGTCCTGCATATGAATATAAGGAGCCTTTCACTCCATTTTGATGAACTTTTTGCTCTCTTGGGAAACATTGGTATTGACTTCCAACTCATTGGTCTTTCTGAAATCAAGGAGTCTGTTGAACTGCCCATCTCAACAAATATTGACCTTCCTGGGTACAAATTCCACTATACCTCCTCCCAGAGTGCTGCTGGAGGTGTTGGTATTTATGTTAAGTCAGTCCTTAAAGCTAACAAGAGACTAGACCTTAGTATTAGTTCATGTGAATATGAGACAGTCTGGATTGAAATTGAGAATGCTAAATCCAAGAACATTCTATGTTGCTGTGCTTACCGTCATCCAAGCTCTGACATCAATGCCTTTATTGACCACATGCAAGAAGTCTTGTCCAAGGTTGCCAATGAAAATAAAATTGCTGTCATTATGGGGGACTTCAACATAAATCTACTAAATTCTGAGAATCACACACTCACTAGTGAATTTATCAATGCTATGTTTTCCAACCACTTCCAGCCACTTATACTTCAACCAACCAGGGTAACTGATTCAACAGCAACGCTCATTGATAACATCTTTTCTAATGATTTATCTTGTAAGGTAACAAGTGGAAATGTCCTAGTACAAATTTCCGATCACTTCCCTCAGTTTTCTATTTTCAATAACTCTGCTCCTGACTATAATAACTCTTCTTACTGTGTTTATAATTACAAAAATTTTGATGAATCAAAATTCCTTGATGACTATCAAAAAATGGATTTTGCATTTCTAAATACTGATGATCATACTGTTGACCATAAATTTGATCAATTCCTAACTAACCTCAACCAGCTTGTTGAAAAACATTGTCCAAAAAAGAAATTAAACAAAAAATCGTTGAAACTAAGAAACAAACCATGGATTAACAACCAAATCCAACATATGATGAGGGTCAGAGACAGAATTTTCCAGCagttcaaacatacagaatcctctgaagtttatgcccattataaactatttcgtaatcgtgttgttaatgagataaaagaaagcaaaaaaagttactttcaacattattttgctgaaaacaaatcaaatatgaagttactctggaaggggatcagaagtgtgataaaaatgaaaagtaatggcggtgaaacaaattcgatcccattcataactaatgagaatggtaataagataaccgatcctaacttaattgccaacaactttaatgactattttatcaatgttgctaacaaaattacaagtaaaatccctaggaactcaaattctcctctaagatatctagcttcttctaataacagctgcttctttatatctcccactgttcctgttgaggtttctttgataatccagtcacttaagaagggtaaatctactgggcctaatagtattccagtcaaactattgaaagttcttgacccacacatttccatacagctctctcaaatcatcaatgaatcatttctaaatggtatctttcctgataaactaaagattgctaaagttattcctattttcaaaaaaggtgatgcctccaagaattcaaattacagacccatctctttgctgtcagtatttagtaagatctttgaaaagctcatgcatcaacgcttgtacaattttctagaacttcgtgggatcctgtttcaaatgcaatttggattccgcaatggtcattccactgatcatgcattgatcagtttaagtgagagaattaaatctactttggactcaaaaagaattggctgtgggatctttattgacctgcaaaaagcctttgatactgtcaaccataacattctactacaaaaacttagtcactatggaataagaggctcagcactgcactggtttgagtcctaccttacggaaagacttcaatatgtttcaatcaacaatcattcttctagtcttagcaaagttacttgtggtgttcctcagggctctgtacttggtccattactgtttctaatctatatcaatgaccagcctaatgtatccaaagtgctttctttcttcttgtttgcagatgatgcaggtgtttattttcaaactggaagtgttgcagggcttcggtgtggaatcaataaagagctgataggggtgaggtcgtggcttgaagttaatagattagctctgaacattgaaaaaacaggctttgttgtgtttcactcccctGGAGGGGGATTGCCTGGGCGTATTCTTGTTGAATTTGAGGACGAAATCGACGTCGTTGGCGTTCCTGAACGACCGAAACCAAAACAAGCGGACTCTTCAACCGAGAAGCGAGTACTTCTAACGACAGACAAATCAAATCTGACGAATAGCATACCAAACTCATCGTCCTGCAATGCTTCACCAAATTCATCGGACACTGACGACTCTTCCTCCGGTCGGACTCGAAACTTCGGTCCACACGGGAGAGTTTCCCATAATGATCTCGAAAGAAAACGACGTGATGAACTCAAGCGGAAATTTGATTGCCTCCGAGCAGCGGTTCCTGAGTTAGAATCGAACGAAAGAGCGCCTAAAGTCGTTATATTAAAAAAGGCAGCGTTATGCGTGCCTCGACTTGAAAACGAGGAGCAAGCATTGGTAATGGAAAAAGAGAACTTGAAAAGGGTGAATTCACTGCTAATGCAAAAACTGTTACTACTTGTGAAAACAAGGTAGACAACCTTAACTTATATTTGTTTTCAATTTGAGTGTATATTTTGTAAGTAAAATGATTGATAATTATATTTATAGCTTTGTTTAGATAAAGCTTTGCATTTTTGACGTTCTAAGTATCTTATTAATTCAAAAGTAAATTGTAATATTTAGTTTCATCTGCGTATTGGGGCATACGCTTCAAATAGTTCAAACTGGTTACGACCTCTTTCTTTCGTTAACTTTTGTGATATCTTGATTGTCTTCAAAGGTACAGCGTTTTCttaggacctgttcatatggagacgagccagcccgcttaccgggctggcccgctaagtgagctgatttcgcattctgttcatatggcaaatacatcccgcctaccgggatggaattggtcacgtgccatcgttggtggtattgttttgcatgcccacgcgtgcgtagtagaggcgttttcgtttcggcaggcgagctggagtgttcatatgggaaaattttgacctcgccaagcgggatctcggcattacttgagtgagatctcgcctaccgggccagcccgcctgctcatatgaacagacaacaaactttgaatgggaaacagggataaggtgagatctcggcaaaaacctccagcccggtaggcgggctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcccgcctaccgggatggaattggtcacgtgccatcgttggtggtattgttttgcatgcccacgcgtgcgtagtagaggcgttttcgtttcggcaggcgagctggagtgttcatatgggaaaattttgacctcgccaagcgggatctcggcattacttgagtgagatctcgcctaccgggccagcccgcctgctcatatgaacagacaacaaactttgaatgggaaacagggataaggtgagatctcggcaaaaacctccagcccggtaggcgggctggctcgcctccatatgaacaggtcCttatattccaacttgtttgagcttgcaaaatcatcagatctttaaatttgtaaaccagaagaacgtcaagagtctgctcacaaccatgttatatgtcttcataatctttggttttatcaacaattcaagcatgtttgctcaaatgattataacattacgcttgttttctgtttttcaaaacttatataaaaccctgtaattttgaaaatatcaataatgtcaataaaattcatggtagaatacagcaaagcacctaatgtctctttcgatcaattcaatcccaagaaagatattataaatgc

Protein

Gene family

Family type	Membership / link
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1174.g1.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.