Gene detail

Detailed information of scaffold12.g60.t2 in Aurelia aurita

Genomic Location: scaffold12:755693...777019
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold12.g60.t2

atttgtccaggaaaaatctttttggtcacgaagactccaaggtgcacgctaatttcaaggtggcctaactggtattgaatgagatttgaaggagctgcatttgagatgaaactgtagcagcaatctactgatttggatatttcttgacgagaacatcctaaacataaagtgatatgcagaactggcctactagtatcgactatggaagtgcggttaacagaagttgtactgagacaaaaggaaacaagcgaacaaaagataagaaaacagaagcaaggaaaaaagacaaaaggaagcctctgtggtgctcagacaagacaaaattaaccaaaccagacaaattttctaactttggattggtttcacagcttggtttattattttgcacgattgggcctagtatttggttattattcaagaaaatacattcgatcgaaattgtaacgcatatggaatgttaaaattaaggacatcagcagaagatggattgcagttttgatagcaagccggattaatcgcttcgtgagttgaagtgtgaggttaacgtgtgtcaaaggacatcttcggttggcttcaccttccgtgcccttccaacttcatttccatacatatttgtgcgtggctggtttaatgtcagccattttccagacggcagtctagacatcgagatttcggtggagtgaatcacggaattgttaatctcaagcatggctgagcctgctgaaggatttggtgagcaacctggtcctgggaatcctgggaaaggaggaagattgaggaaacgagcaaagaatatcaaagaggaagacggagaagaagacagtgaaatgatgtcaattgattctcacagcgtaaaaatctccaaatatgagtcaaaagagcaaaccaaggaaaggtttgccagggaaaaccatagtgaaattgagaggaggagaagaaacaaaatgaatgcatatatcagtgagctttcagacatggttccttcatgtaatggtttgccaaagaagccagacaaacttacgatacttaaaatggctgttacatatatcaagtctttgaggggtggttcccctcctccaactgacggcaattcaaagccgtcctttttatcagatcaggaattgaaacatttggtgcttgaggcagcagatggattcttatttgtgttatcgtgcaccactggaagagtggtttatgtctctgattctgtagaaccagttttaaatatgtcacaggaagaatggatcaaccagtcaatatatgatttaattcatcctgaagacagagacaagttaagagatcaacttggcacagatgtcacacatgaaaccagagttttagattcaaaaactggaagtgtgcggaaagatggaccacaagcacttgcaggacgacttggtattggatcacgtcgaaattttataattcgcatgaaatgcgggaagattgaagaaagttcggaagcttcagattcacgaatgaatgaaattaaaaatcgatgtaaagaaaaaagaaaatcatacaatggagaagattatgcatttgttcactgtactggatatgtaccggtaagtgttagaaaaactttcttcattgagaagaggggtcaatgcgaatctggaagtgtgcggaaagatggaccacaagcacttgcaggacgacttggtattggatcacgtcgaaattttataattcgcatgaaatgcgggaagattgaagaaagttcggaagcttcagattcacgaatgaatgaaattaaaaatcgatgtaaagaaaaaagaaaatcatacaatggagaagattatgcatttgttcactgtactggatatgtaccgaatttcacaccgttcatcaccccagaaatagatcaagatgacggagaatgctgtttggtatgcatcggcaaaatgcaatcaacgaacatggtgacgtcaaaggacaacgagaatacacctgctactgaattcataacgaggcaaacaacagatggcagatttagctttgttgatcaagcggtaacagaaatacttggatacaaaccagtcgaacttcttggtaaaaattgttatgatttctatcatcctgagaatcaagatgaaatgtttgcaaacttcaagcaagttttgtcacaaaaaggacaacctttaacggcaaagtttaagttcaaacataaaaatggagagtacatcatccttcgagcgagctgttacagttttcagaacccatacacagacgaccctgaatatatcatatgcacgaatagtcctgtccgaaacagaatggataaaggaataccaataatgctaaaacatgacgttgaaaataacatggaagaagagatgccaggttccccacaatatcctgatgcttcatcaaaactgcaggaaatgccaggggtctttccgtatccacctcaagcactcgatcctacacgaggttatgctcaagcttcttcatctgcagcagagggtgattccgatcgtggcaaaggatcgaaaaggaaatcttcagggcagaaaataaagagaagtcaatttaaatcagggaaaattgattatggcggtggtcaagaaagagttgcatcaggggataaatattcacaacaaggaccatttggagatttttcgagttcacaagctggagagatgctaagagctttagcaaggcggcaacaagagcagacactaagccctatcggaaaagtttcaacatcgcagttcgagcaaggcatgtttggagccggtcaagcgaactggcctagtggggtaagccaatacagtctacccggcgctgaagcagcttatgattatatggacacgaacactgggggtgcaagtgcgcggcctcaatcttcaccctacaacctccctgtcagtgaaataacacttgcaaggcaaatgatgcaatcgagtgcaaatcgaggctacgagcaaccaatacgaggcggaatgccatatggacaacaaccagttactccaagtttgccatcaccaaattcgcaacaaatgcagggaacgaatagcgcgaaaattcttaattatcaacagcagatgaaccaacaaagatcgtccgatatacagtttccattttattgagacattgtggaggagatctttgccggaaaaagacaacaacgtttcggtacaagccatcttttgggtttgactgaatgcgggattttcgttgggtttcatacacacaggagagatctgtctcctttgagaagtctcctagagcattacaaacttgcatttaatgaaatattgctaatgggaacgggtaatggtatgacatcttgtatttacattttgttgtttcggtttattaacagattgggtttgcccgtcctcactccggtttcatataccccagttccctactgcccatataaggatatgcctatgtaataattacggggaaaacagtgtcgtttcacccaaatgctggacatttttagagagaattgtcaaatggacaggaagagggataaagtaagagcgaagtaagaaatcaaaacctttcgactgaattaataaaaatttgcaatattcctgaactagcaagtacttaaacaatctgcaaggacatgaaatttgcaaaactaaaggcccagacactttaaatgaaacaatcccacgtccagagcatcttatagacaactttaatgttttgttgcttacaatttgatactttttcacgtagaatagtcgatttatctgcaggttaagggtagaagtttaaagggcagctcaaattttaatcagcgataaactgtcaccttagctttgtaagttgcctacaaaaattggcgttttcatatacttttgtaaagaggaaaaggggagacaagtcactttcgcgaccaacagttttagttaattaatgttacataaagtatttcatattactaacaaattaggttgtaaacaatagacatttatgcaacgcatcttcccttatttagaattgtacggtagtttttttgtaagacaacgttagttttagttttagcaaatgcagaagaaaatctcctcaaagactgaagtatcttagtttttgttttacacaatacactcattttttataagaaacctcttataagaaactgtagtagcttcttccagaaaattaagaaactgtactagaaacaatctgaggtcaattagaagttaggaaacttttcaacattttgttgtgagttgcttttaaccaggaagtgtatcacccacccaaataaaaccaaaaagtataa

Transcript

scaffold12.g60.t2

ATTTGTCCAGGAAAAATCTTTTTGGTCACGAAGACTCCAAGGTGCACGCTAATTTCAAGGTGGCCTAACTGGTATTGAATGAGATTTGAAGGAGCTGCATTTGAGATGAAACTGTAGCAGCAATCTACTGATTTGGATATTTCTTGACGAGAACATCCTAAACATAAAGTGATATGCAGAACTGGCCTACTAGTATCGACTATGGAAGTGCGGTTAACAGAAGTTGTACTGAGACAAAAGGAAACAAGCGaacaaaagataagaaaacagaagcaaggaaaaaagacaaaaggaaGCCTCTGTGGTGCTCAGACAAGACAAAATTAACCAAACCAGACAAATTTTCTAACTTTGGATTGGTTTCACAGCTTGGTTTATTATTTTGCACGATTGGGCCTAGTATTTGGTTATTATTCAAGAAAATACATTCGATCGAAATTGTAACGCATATGGAATGTTAAAATTAAGGACATCAGCAGAAGATGGATTGCAGTTTTGATAGCAAGCCGGATTAATCGCTTCGTGAGTTGAAGTGTGAGGTTAACGTGTGTCAAAGGACATCTTCGGTTGGCTTCACCTTCCGTGCCCTTCCAACTTCATTTCCATACATATTTGTGCGTGGCTGGTTTAATGTCAGCCATTTTCCAGACGGCAGTCTAGACATCGAGATTTCGGTGGAGTGAATCACGGAATTGTTAATCTCAAGCATGGCTGAGCCTGCTGAAGGATTTGGTGAGCAACCTGGTCCTGGGAATCCTGGGAAAGGAGGAAGATTGAGGAAACGAGCAAAGAATATCAAAGAGGAAGACGGAGAAGAAGACAGTGAAATGATGTCAATTGATTCTCACAGCGTAAAAATCTCCAAATATGAGTCAAAAGAGCAAACCAAGGAAAGGTTTGCCAGGGAAAACCATAGTGAAATTGAGAGGAGGAGAAGAAACAAAATGAATGCATATATCAGTGAGCTTTCAGACATGGTTCCTTCATGTAATGGTTTGCCAAAGAAGCCAGACAAACTTACGATACTTAAAATGGCTGTTACATATATCAAGTCTTTGAGGGGTGGTTCCCCTCCTCCAACTGACGGCAATTCAAAGCCGTCCTTTTTATCAGATCAGGAATTGAAACATTTGGTGCTTGAGGCAGCAGATGGATTCTTATTTGTGTTATCGTGCACCACTGGAAGAGTGGTTTATGTCTCTGATTCTGTAGAACCAGTTTTAAATATGTCACAGGAAGAATGGATCAACCAGTCAATATATGATTTAATTCATCCTGAAGACAGAGACAAGTTAAGAGATCAACTTGGCACAGATGTCACACATGAAACCAGAGTTTTAGATTCAAAAACTGGAAGTGTGCGGAAAGATGGACCACAAGCACTTGCAGGACGACTTGGTATTGGATCACGTCGAAATTTTATAATTCGCATGAAATGCGGGAAGATTGAAGAAAGTTCGGAAGCTTCAGATTCACGAATGAATGAAATTAAAAATCGATGTAAAGAAAAAAGAAAATCATACAATGGAGAAGATTATGCATTTGTTCACTGTACTGGATATGTACCGGTAAGTGTTAGAAAAACTTTCTTCATTGAGAAGAGGGGTCAATGCGAATCTGGAAGTGTGCGGAAAGATGGACCACAAGCACTTGCAGGACGACTTGGTATTGGATCACGTCGAAATTTTATAATTCGCATGAAATGCGGGAAGATTGAAGAAAGTTCGGAAGCTTCAGATTCACGAATGAATGAAATTAAAAATCGATGTAAAGAAAAAAGAAAATCATACAATGGAGAAGATTATGCATTTGTTCACTGTACTGGATATGTACCGAATTTCACACCGTTCATCACCCCAGAAATAGATCAAGATGACGGAGAATGCTGTTTGGTATGCATCGGCAAAATGCAATCAACGAACATGGTGACGTCAAAGGACAACGAGAATACACCTGCTACTGAATTCATAACGAGGCAAACAACAGATGGCAGATTTAGCTTTGTTGATCAAGCGGTAACAGAAATACTTGGATACAAACCAGTCGAACTTCTTGGTAAAAATTGTTATGATTTCTATCATCCTGAGAATCAAGATGAAATGTTTGCAAACTTCAAGCAAGTTTTGTCACAAAAAGGACAACCTTTAACGGCAAAGTTTAAGTTCAAACATAAAAATGGAGAGTACATCATCCTTCGAGCGAGCTGTTACAGTTTTCAGAACCCATACACAGACGACCCTGAATATATCATATGCACGAATAGTCCTGTCCGAAACAGAATGGATAAAGGAATACCAATAATGCTAAAACATGACGTTGAAAATAACATGGAAGAAGAGATGCCAGGTTCCCCACAATATCCTGATGCTTCATCAAAACTGCAGGAAATGCCAGGGGTCTTTCCGTATCCACCTCAAGCACTCGATCCTACACGAGGTTATGCTCAAGCTTCTTCATCTGCAGCAGAGGGTGATTCCGATCGTGGCAAAGGATCGAAAAGGAAATCTTCAGGGCAGAAAATAAAGAGAAGTCAATTTAAATCAGGGAAAATTGATTATGGCGGTGGTCAAGAAAGAGTTGCATCAGGGGATAAATATTCACAACAAGGACCATTTGGAGATTTTTCGAGTTCACAAGCTGGAGAGATGCTAAGAGCTTTAGCAAGGCGGCAACAAGAGCAGACACTAAGCCCTATCGGAAAAGTTTCAACATCGCAGTTCGAGCAAGGCATGTTTGGAGCCGGTCAAGCGAACTGGCCTAGTGGGGTAAGCCAATACAGTCTACCCGGCGCTGAAGCAGCTTATGATTATATGGACACGAACACTGGGGGTGCAAGTGCGCGGCCTCAATCTTCACCCTACAACCTCCCTGTCAGTGAAATAACACTTGCAAGGCAAATGATGCAATCGAGTGCAAATCGAGGCTACGAGCAACCAATACGAGGCGGAATGCCATATGGACAACAACCAGTTACTCCAAGTTTGCCATCACCAAATTCGCAACAAATGCAGGGAACGAATAGCGCGAAAATTCTTAATTATCAACAGCAGATGAACCAACAAAGATCGTCCGATATACAGTTTCCATTTTATTGAGACATTGTGGAGGAGATCTTTGCCGGAAAAAGACAACAACGTTTCGGTACAAGCCATCTTTTGGGTTTGACTGAATGCGGGATTTTCGTTGGGTTTCATACACACAGGAGAGATCTGTCTCCTTTGAGAAGTCTCCTAGAGCATTACAAACTTGCATTTAATGAAATATTGCTAATGGGAACGGGTAATGGTATGACATCTTGTATTTACATTTTGTTGTTTCGGTTTATTAACAGATTGGGTTTGCCCGTCCTCACTCCGGTTTCATATACCCCAGTTCCCTACTGCCCATATAAGGATATGCCTATGTAATAATTACGGGGAAAACAGTGTCGTTTCACCCAAATGCTGGACATTTTTAGAGAGAATTGTCAAATGGACAGGAAGAGGGATAAAGTAAGAGCGAAGTAAGAAATCAAAACCTTTCGACTGAATTAATAAAAATTTGCAATATTCCTGAACTAGCAAGTACTTAAACAATCTGCAAGGACATGAAATTTGCAAAACTAAAGGCCCAGACACTTTAAATGAAACAATCCCACGTCCAGAGCATCTTATAGACAACTTTAATGTTTTGTTGCTTACAATTTGATACTTTTTCACGTAGAATAGTCGATTTATCTGCAGGTTAAGGGTAGAAGTTTAAAGGGCAGCTCAAATTTTAATCAGCGATAAACTGTCACCTTAGCTTTGTAAGTTGCCTACAAAAATTGGCGTTTTCATATACTTTTGTAAAGAGGAAAAGGGGAGACAAGTCACTTTCGCGACCAACAGTTTTAGTTAATTAATGTTACATAAAGTATTTCATATTACTAACAAATTAGGTTGTAAACAATAGACATTTATGCAACGCATCTTCCCTTATTTAGAATTGTACGGTAGTTTTTTTGTAAGACAACGTTAGTTTTAGTTTTAGCAAATGCAGAAGAAAATCTCCTCAAAGACTGAAGTATCTTAGTTTTTGTTTTACACAATACACTCAttttttataagaaacctcttataagaaactgtagtagcttcttccagaaaattaagaaactgtactagaaacaatctgaggtcaattagaagttaggaaacttttcaacattttgttgtgagttgcttttaaccaggaagtgtatcacccacccaaataaaaccaaaaagtataa

Protein

Gene family

Family type	Membership / link
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF08447 all species →	PAS_3	PAS fold	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR050933 all species →	Family	Circadian Clock Transcription Factors	Interproscan
IPR013655 all species →	Domain	PAS fold-3	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR001067 all species →	Family	Nuclear translocator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042 all species →	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09097	ARNT; aryl hydrocarbon receptor nuclear translocator	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.