Gene detail

Detailed information of scaffold12.g61.t3 in Morbakka virulenta

Genomic Location: scaffold12:1909440...1961310
NR annotation: KAJ7323127.1, DEAD H (Asp-Glu-Ala-Asp His) box helicase 11 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold12.g61.t3

GATTTAAGGGATTACGCATTGGCTGAAGTGTTGGACATCGAAGAGTTAGTTGCACTTGGCAAAAACCTAGAAGTTTGCCCTTACTACGGCAGTCGCTTTTCAATTCCCCAGGCACAGCTTGTGGTGTTGCCCTACAATTCCATTCTTCACAAGTCGACTCGTGAAGCCATTGGTGTAAAGTTAAAGGATAATATCCTAATTGTTGATGAAGCACACAATCTTATGGAAACTGTCAATAGTATACATAGTGTTGAAATATCCGGAAGTCAGAAAATAGAGCTAAATAATGGTGTTGAGTTATGTAAGTGTGGAATTATAATATTCATTTTTTCTTCATTTGATCAGCTCACTTCCTATTTCAATAAATACAGGACAAGACTGAAAGCTAAAAATCTTGTGTATATAAACCAATTATTGTACATACTAACTGCATTTAAGGATGTGATCGGAGCTTCCAAGAAAACAATTGTAGCAGAACATATTCGAAAGGATGTGAGAGGCGGGCAAGTTCTTCCGGGCTTAGATACAAGGCTGGAAACAATAAACGACTTCCTATTCAACGCACGAATAGACAATGTGAACCTTTTCAAGATAAGAAGGTATTGCGAACGAAGTTTGATAGCAAGGAAGCTAAATGGGTTTGTTGATCGACACTTGAAAAAAGAAAATATAGAGATTGCAAGTCAGTTTGTGTATGTCGAGGCATTCCTTGAAGCGCTGACAAATGCTGATAAAGATGGACGTGTTTTAGTATCGAAAAATGCGATCTCTTCAAAAAGTGCATTAAAATTCCTCCTCCTGAACCCAGCAGTGCATTTTGCAGAAATCGTACGAGAAGCGCGAGCAATCATCATTGCAGGTGGCACAATGCAACCGGTGGAAGAAATAAAAAATGTGTTACTTTACTCAGCTGGTGCCAGCAGCGATCGGATCGTGGAGTTTTCTTGTGGGCACGTTATTCCAGCTGAAAATCTAGTTACAATAGCTTTATCACGGGGCCCATCAAACTTGGAACTAGACTTCACATACCAAAATCGAGATGGACATACAATGATTGATGAACTTGGACGGCTTATTCTAAACCTTTGTACAATTGTTCCAGGCGGTATAGTTGTTTTCTTTCCTTCATACGATTACGAAGAGAAGATTTATTCCAGATGGATAAGTACAGGCACAATAGCCAAATTTGAAGTCAAAAAACGGGTTTTTCGCGAACCAAGGCTGTCAAGCCAAGTTGATTCGATGCTGGTCAGCTATGCCAGGACAATCAAGTGGGCATCAAACCCAGAAAATACAACTGGAACTTCCAAGCAGACTGGGGCGATGTTGTTTAGTGTTGTTGGTGGGAAAATGAGTGAAGGAATCAACTTTTCTGATGACCTTGGAAGGTGCATCGTTATGGTTGGCTTACCCTATCCCAATATCAACTCACCGGAACTTAAGGAAAAAATGGAGTATTTGAACAAAACCCTTGGGCCTACTGCTGGTAGAGAACACTATGACAATATATGTATGAAAGCTGTGAATCAGTCAATTGGCCGTGCCATTCGTCACAAACAGGACTTCGCTTGCATTGTATTAGCTGACCATCGGTTTGCAAGGTCATCAGTGCGATGCAAATTACCGAAGTGGATTCAAGAAAGAGTAACGACATTTGAACGCTTTGGGCCAGCTGTCGGCTCCATTTGTAAGTTTTTCGGTGAAAAGAGAAAGAGAACAACTTGAATTATTTTCAAAATGGGTTGATACGAACAGCCATCCCAGATAATGAGACCAAACCATGTTATCCTAACATGGAATTTTGGCTTTAAAAGGCCGCCGTACAACAGGATCTTAAACATCTGTTATAACATTGATAGTTAAGGTTGCTTAATCTTGATAGTTTTGTTTTTATATATTTATACAATAAAGCGGTTTCAATTGTTATTCTGATGTTGAATGGAGCGAGGGATTCATGGAATTAAGCTCCTTGGCTTCTCATTTTGTAAGGAATTTATTATAGTTTAATGCATTGAGGACATGATTGGTAAATATCACAACGTTTCAACTATATTCTGAACACGAAGGAAAATCAACAAGGTCGAGACCTTTTCACAGTATAATCACCTGACATGTGTAAATCACGGACTAAAGTTATTGCCTAACCTTTCCGCGACTTACCTTGTGGTAACAAAAAGAAACTACAAAGATAAAGATGCTAGACAACTTTATCAGAATAATGATTTCTCACGGTGAATAACGTCATTACAACGTTTCCCCGTGGAGTAGGAATGTACAATTAAGACATCTCTTTTCTTGGACAAATCTGAACATCAGTTCTTAGCTTACAAACACTAACAGGTCAGTTTTATTTTAGGAGAAAAACACCTTTTTTCGTTACGGTGATGTTATATTTGTGTTACTGATCCATCTCAATGTACATTTAGCTCATGAGCAGTGAGTCATTGTTATTTTATTTGTTGTTGTCATGAGACGTTGTTTACTTGCACATAATGAAAGGTAAGCTTCTGCCAAATGAATTTTCATTTTAGTAATCCGATATCGTAATAATCATTCTGAACTTGAAACGTGCTGTTGACTTAAGTTTCCTAGTTTTGGAAGATATGTTAAAGCCAAATTGTCATATTTATCGACATGCTATGCAGCCAACTGTTTGTAGATTTCCATAGAGCTATTTGGGAATAATATGTGCAGTTGTGGCGGCTTGTAACTTTATTTGCATTTTATTGTTTGTAACTTATCCCACATCAACATAGCAGTTTTTATTGCTCTTTTTACGAGCTATATTTATTACATGAAAACAAAAGTTTCAGAGTACACCTCTGTCGCAGGAAGAAGGCTTGTCTAAACATTTAGCAAAGTCCTTTTTCATTGAATTCGAAATCAGTTTACTCACCTGGAGTGTGTCATTGTGGAGACCTTACTTACGGAAGAAGAAGAAATGATCATTAAACAAATGTAAAAGCCATGCAGTAATAAAATGCAGTGCATTTCTTTTTCATCCAGGTGAAAAGTATCATCAAAACTTAAAAGCTAACCATCATCTGCATCGTGAAACCCGAATAGCTGTCCCATTAATTTCCAGTCTCTAGTCCATAAATCCGTTAAAGGATAAATGTTTAATAAAGCAATAATATTTACGTTTGACCAAGTATTTTTTTTATACGAAATATTTTAATCTGAGTAGGATTGCTTCAACTACCATTCATGTTTAATCAACAAGGTGAAAAGGCATAACCCAATAAAACGCTTAATATGTGCAAAAGGTATTAAGAATTGATAAGAAGCCCTATTAGATACCGGAGACCTCCTTTTCTACAAACTATTCATATCTTGATGCACACCTCTTTTCGTACAGACCTTCACTGAGAGTTAGAACAACCAGTGAGGCTAAATGGATATTTAAGATTTCCGTCAAAGTACACGGTCCACTTTGTCGGCTATAACGTTTCCACCCCCGTATTGTATGGCCCCCAGTATGTTTGTTATTATTTCTCTGTTGTCTTTGCGTTCTTACATTTGATTGTATTTCCATCTTGATAGTTGCTTCTCTGTGTCGATGTACCATTGTTGCAAAAAGCTCATTTGGTAACATCATTTTCGCTTTCATTGTATTAGGTGACCATCGCCACACCCCGCGACAGTGAATTGTATTGAGTTACCTTTATTACATAAAAATGATTTTAATGT

Protein

Uniprot

Uniprot term	Description
F1R345	ATP-dependent DNA helicase DDX11 OS=Danio rerio OX=7955 GN=ddx11 PE=2 SV=1
Q6AXC6	ATP-dependent DNA helicase DDX11 OS=Mus musculus OX=10090 GN=Ddx11 PE=1 SV=2
Q92771	Putative ATP-dependent DNA helicase DDX12 OS=Homo sapiens OX=9606 GN=DDX12P PE=5 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF06733	DEAD_2	DEAD_2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR010614	Domain	RAD3-like helicase, DEAD	Interproscan
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013020	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan
IPR014013	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0034085	Biological Process	establishment of sister chromatid cohesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11273	DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala