Gene detail

Detailed information of scaffold12.g64.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold12:881578...900238
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold12.g64.t3

aaaataagcaaacttcaaaattgcccccaggtcaaaaccagagctgctgcattaacagtgatgaatcataatgtcaaattgtaaaacatggcaatccctgcaattgcaaagaattgctgacaaacacgcaaacacatgatttatttgaacattgaacagacactgtcacaaagatttccgtcaaaatactgccatgcttcttaagtatatttcatcaaacaagtacaaagcactgcatgctgaaatcagagtgaaaagaagtttggaatcttttggaaagagccaatccaagaaaattgaactgatagggcaggagaggacaagtcgtaaaaagagagcaataaatgatccagcaatttgcggaagtcaaacagtttttggtggacttctggaaatatgacatcccctggctaccctggcaactacacaactcacataaactgcgtttggcacataaaagttccagtaaaatacgcaatagccataacatttgatttattcaattttgaacacgacaaaagatgcttatttgacagcgtggaattctttgatgggcctagcgttaattcgaagtccgttggacggttctgtggtacttcaaaaccaattggtgttcgctcgtctctgaatgtgctcacgattcgaatgaaaacagatgatacgattgaaaggttgggtttctcattaaaatggaattacacagaaccaatgcttccacatcctggttttctggtaacatcaaatatcgttgttgatcaaattggtccaactccaaatgatttgaaaaaattcacttttgtgttcaacaaaccaacgacctgtcctttgcaaagcaaaaatgtgtattgttactttcaatacgatgcagtgataatcagtcgaattatttcaacaacaacattgccaccaataaacatgaatggacgtcacatagatgttgtctttgaacacgtgattgatttgaaagcattccctacactgtacaaatcaaagaaattttgtatgagatggaatgatactattcccgcaactgaaaatggtgcatggactcgatatggtggcaatatttatcacacagatatgttttcgacgacgtgcagatttgagaaacctggaatatatgctgttattgctgagtacaatttccaaggagaaaaagaatattttagattcactggatcgttctatgctggattgttcttctctgttgtctggctggtgatcttgatgggccaatggggcttttccaggagaatcaatgtcccagaatggttaaatttcaatcaagcagtagctcttctcttgttcatcggtgttattcttagtggacttcatttgcactttgaacagatgaagtgtgcactattggccttcctcctttatttctttgggttgagtgtctttttctggcagttcctcaaagctgctcagctcagtggcaaattcgatgaattttttgcaaaaggacgaaacatctttctgttttatttcctgcttggatggaccatcccgatgtttatttccggtatggcagctggtgctacgttcttcccacgggaatcatcgcaaagaatagctaaaaggtttattcggacgaaagcttccccactttcaatgtatgtcacaggaagctgccacatagcgttgttgaaaccaaagaaaagaacaggccagtccagatgttattttaggacaatcatagaagctactaccggttaggcatagtaattttgcagaataaacccactgtcaaattatggaattaaagcaaacaggacaaaatgttgatcttttttctttttacttaaacgcctcaacttgttgggcccgtgctgtcaaagttgatgctacgcagtcttgggttatggcatataacaaagtagcctgtgttccagaccacttgagaaggaaagtggtctgtgtaaccaagcactaatccgtgttcacaaattttcttcggaatctgaagaaaaattaatatatgcaactaataatt

Transcript

scaffold12.g64.t3

aaaataagcaaacttcaaaattgcccccaggtcaaaaccagagctgctgcattaacagtgatgaatcataatgtcaaattgtaaaacatggcaatccctgcaattgcaaagaattgctgacaaacacgcaaacacatgatttatttgaacattgaacagacactgtcacaaagatttccgtcaaaatactgccatgcttcttaagtATATTTCATCAAACAAGTACAAAGCACTGCATGCTGAAATCAGAGTGAAAAGAAGTTTGGAATCTTTTGGAAAGAGCCAATCCAAGAAAATTGAACTGATAGGGCAGGAGAGGACAAGTCGTAAAAAGAGAGCAATAAATGATCCAGCAATTTGCGGAAGTCAAACAGTTTTTGGTGGACTTCTGGAAATATGACATCCCCTGGCTACCCTGGCAACTACACAACTCACATAAACTGCGTTTGGCACATAAAAGTTCCAGTAAAATACGCAATAGCCATAACATTTGATTTATTCAATTTTGAACACGACAAAAGATGCTTATTTGACAGCGTGGAATTCTTTGATGGGCCTAGCGTTAATTCGAAGTCCGTTGGACGGTTCTGTGGTACTTCAAAACCAATTGGTGTTCGCTCGTCTCTGAATGTGCTCACGATTCGAATGAAAACAGATGATACGATTGAAAGGTTGGGTTTCTCATTAAAATGGAATTACACAGAACCAATGCTTCCACATCCTGGTTTTCTGGTAACATCAAATATCGTTGTTGATCAAATTGGTCCAACTCCAAATGATTTGAAAAAATTCACTTTTGTGTTCAACAAACCAACGACCTGTCCTTTGCAAAGCAAAAATGTGTATTGTTACTTTCAATACGATGCAGTGATAATCAGTCGAATTATTTCAACAACAACATTGCCACCAATAAACATGAATGGACGTCACATAGATGTTGTCTTTGAACACGTGATTGATTTGAAAGCATTCCCTACACTGTACAAATCAAAGAAATTTTGTATGAGATGGAATGATACTATTCCCGCAACTGAAAATGGTGCATGGACTCGATATGGTGGCAATATTTATCACACAGATATGTTTTCGACGACGTGCAGATTTGAGAAACCTGGAATATATGCTGTTATTGCTGAGTACAATTTCCAAGGAGAAAAAGAATATTTTAGATTCACTGGATCGTTCTATGCTGGATTGTTCTTCTCTGTTGTCTGGCTGGTGATCTTGATGGGCCAATGGGGCTTTTCCAGGAGAATCAATGTCCCAGAATGGTTAAATTTCAATCAAGCAGTAGCTCTTCTCTTGTTCATCGGTGTTATTCTTAGTGGACTTCATTTGCACTTTGAACAGATGAAGTGTGCACTATTGGCCTTCCTCCTTTATTTCTTTGGGTTGAGTGTCTTTTTCTGGCAGTTCCTCAAAGCTGCTCAGCTCAGTGGCAAATTCGATGAATTTTTTGCAAAAGGACGAAACATCTTTCTGTTTTATTTCCTGCTTGGATGGACCATCCCGATGTTTATTTCCGGTATGGCAGCTGGTGCTACGTTCTTCCCACGGGAATCATCGCAAAGaatagctaaaaggtttattcggacgaaagcttccccactttCAATGTATGTCACAGGAAGCTGCCACATAGCGTTGTTGAAACCAAAGAAAAGAACAGGCCAGTCCAGATGTTATTTTAGGACAATCATAGAAGCTACTACCGGTTAGGCATAGTAATTTTGCAGAATAAACCCACTGTCAAATTATGGAATTAAAGCAAACAGGACAAAATGTTGATCTTTTTTCTTTTTACTTAAACGCCTCAACTTGTTGGGCCCGTGCTGTCAAAGTTGATGCTACGCAGTCTTGGGTTATGGCATATAACAAAGtagcctgtgttccagaccacttgagaaggaaagtggtctgtgtaaccaagcactaatccgtgttcacaaattttcttcggaatctgaagaaaaattaatatatgcaactaataatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050841 all species →	Family	Developmental metalloproteases and endocytic receptors	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24251 all species →	OVOCHYMASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold12.g64.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.