Gene detail

Detailed information of scaffold1201.g5.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1201:30221...56504
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1201.g5.t2

acgttcttgacttcattagcagcttaattatgtcaaaacaatcgttttctagaacgaacgaatcattagccacttattgatagtactcattatgcaaataagtcaactttagaggatgatgtaactggtggcctgcacagaggctagcattcgcagcatcaccgaagatagaaggatccccctcctacacagctacagaaaggtgcagaatcccagcaaacaatagaccttttagctattctaaaaggagcctggatcgaacgttatttttatacatttttatacgttacgttcgatcgagtggcgttagagcttctatcactattgtgcacattcgaaaattctacaaagtgtagcaaaagtttgttcgattctgattctttcctgaatagctaaaaggtctatggcgccattgactgggggaaggcacgagatcacactgaaccaaaacatcttcatgcatatcattctgcacagaggttatcttcgtgactgcttgtctcaaattagatgcccgcgaatagcaacaattgaaacgttctgtagggttctgcataagtatttttgcgttatcgtaaatctcacatgacatctcatttgacacagatgcaccaatagtttcgtgcacgaactaagcaaactaggggtaatgacttttgatttttgcgtatcattctcgtttgacataaagaccaaaatattgcctttgaggcgattcttgtccttatacaaggcgctcgattttccattgaaggcgactttagcagcaacactcatctctctgactttagctaaaaacagcatctacggtcatttggggttatgaagaaatccatattcagatatccttatgcttgtttagctcagctcaggacagactttgtaatcatccaaaaggatcttatgttcttcagaaaggaggatgccctcagtcagacttcatcagttacaagctctgtaaataatgctggtgtttatgagattcctgcaagactcaagactcttcataaccttgtcatacagtatgcttctcagggtcgatatgaagttgctgtgccattatgtaaacaagctttggaagatcttgagaaaagttctggccatgatcatcctgacgtggctactatgctcaatatcctagcattggtatacaggtctttccatttacatctgattctatggcaggaaagacatagcagtcattgcaatgtctcacatgcgggacaactggctagttctgttgctgctacattgaacaacttagctgtgttatatggaaagcgtggcaaatacaaagaagctgaaccactatgcaagcgggcacttgaaatcagagaaaaggtgctcggaaggaatcacccagatgtcgccaagcagttgaacaaccttgcattactctgtcagaatcaaggcaaatatgacgaggttgagatgtattatcagcgtgctctagagatatacgagagccagttaggcccagatgacccaaacgttgcaaagactaaaaataacttggcatctgcatatctgaaacaaggaaagtacaaggctgctgaacagttatacaaagaggtactaactcgtgcacatgagagagaatttggcaaagatgacgagaataagcgtggaaaagacaatgctccttatggggaatatggtggttggcataaagctgcaaaagtagacagtccaactgttacaactactctaagaaacctgagtgctttgtaccgaagacaaggcaagtttgaagctgcagaaacgctagaagaatgtgcgaacagatcaagaaagaacgcagggcccctcgacacagttcaccagtcacaattagcagctatcctggggtcagattttccaagcaatagtgcagcatcgatctccggtgtttcagtcggcagttcgagttcaagcggcatcggcacttcaagagcatcttcggcatcaagtaaatgcgacgaagagacatcacaacgagaggatgaggataagaagggcaagaaagacaagactacattatccaggttgaaaagaactttcagcaaccgtggtcagaaactgatggagaaaattggaggcggaaaacttcaacgttcaacatcgcgtgaaaatctcgtcgctcagtccaaattgcagcaatcagaaaggatttctaggagcacccccatgcttgcacaaatcgtaccaccagaaaagggatcttcccgatccaggcattcacgttcgtcaaaagaaagtaaagagagcttataatgcacgaaagatcacccatttcacatgagggttacacagagttacatatgattacagaacttggttgatagttactttcattcagttaccaaggcttacgttggtacgttatgagtaattattgttcttttacttaactatgattatgaggtagaggtaaatgacaaaaaagatcgtttgcttattattgtaatatatttgttcttgttgataatttatttgattgatggtagggtttgtgttgttgacaaatcctctgggatgttgaccattctcaatagaattggctgtccttagatgttagcgaaccgaacgatatttccaagctctccgctggagtctacattcacatgataccggggaaggaatttgaccgtaaagaaatcatcgcggtctccccaagaatgcgatgccaaagaaatgtaggtgcaccttataagaatcgatgagccttattttaaaagcgtcgaataatgttccgttcgttcattgttttcgagtgtttatacgatgccgttgtcaaaatgtgtcggttagagttccgtttacaaaatctaccgttttcaaaatctgccggcaaaaagtgtgctgttttttgtgaacgcataccaaaccatgatcatttgtggctccaaagtcgaatttttcctgatttaaaagtcatttccggcctactcatttattttgcttttcatttggcacgcaagggatcatggttaacgatgggtctttaagttgtttgcaattattctcggggctcctgtcgtgataaaaatttcccttcattccttatctgaaataaatagtgctcccttggcctgttgtaggcaggcttcacaggtctgttcacaggctcctatagtgcttccatggaaagctgttaatcattgtccaaacaaccaaacaatccaaacttgtttataaacattcgaggcttcacttgtgaaaatcggacttatataaatcttcgtgtgaatgtttgaaaaccaccaaaggtttgatcagattattttcttgatattgaaacttctttctcgtgcgattttttcacggatgaagttaaccccagaggcgattgttgttttgtctcgcaggatcaaggtggtgattgtttcagccctgttttaaaggatttcgaaatgaccttcagaaaatctcctatatcttagagcaggaattgtcgactcgagaaacgttaatctttcaaaatctaattgaacacgtctactaccaaacaagtcattttccaatattatccaaaatgtaaaatattaggcttgaagtgaaaggtttgtgcctcaagcttaacaacagcctccccttggtgtttcattccacagcgttgtgagcgtattcccctacccctttcctagcgagcaaagggagaaccctgttagagagccattgtcccccagcatcctatgtgggcaccctgcaatttcagactgtctgtagatcaaagtttgcccaaatggaaaatatagatcaacattgcagcggctggtgtaatctgcataatgcaggttgcacaaagcaggttgcaggttatcagttatgggcaagggctgtatggccgtagtaagtagtaagacaaatgttatggaattttggggctattttggacaactcttacttactacttactatggtcatacagcccttggccataaatgataacctgcagc

Transcript

scaffold1201.g5.t2

acgttcttgacttcattagcagcttaattatgtcaaaacaatcgttttctagaacgaacgaatcattagccacttattgatagtactcattatgcaaataagtcaactttagaggatgatgtaactggtggcctgcacagaggctagcattcgcagcatcaccgaagatagaaggatccccctcctacacagctacagaaaggtgcagaatcccagcaaacaatagaccttttagctattctaaaaggagcctggatcgaacgttatttttatacatttttatacgttacgttcgatcgagtggcgttagagcttctatcactattgtgcacattcgaaaattctacaaagtgtagcaaaagtttgttcgattctgattctttcctgaatagctaaaaggtctatggcgccattgactgggggaaggcacgagatcacactgaaccaaaacatcttcatgcatatcattctgcacagaggttatcttcgtgactgcttgtctcaaattagatgcccgcgaatagcaacaattgaaacgttctgtagggttctgcataagtatttttgcgttatcgtaaatctcacatgacatctcatttgacacagatgcaccaatagtttcgtgcacgaactaagcaaactaggggtaatgacttttgatttttgcgtatcattctcgtttgacataaagaccaaaatattgcctttgaggcgattcttgtccttatacaaggcgctcgattttccattgaaggcgactttagcagcaacactcatctctctgactttagctaaaaacagcatctacggtcatttggggttatgaagaaatccatattcagatatccttatgcttgtttagctcagctcaggacagactttgtaatcatccaaaaggatcttatgttCTTCAGAAAGGAGGATGCCCTCAGTCAGACTTCATCAGTTACAAGCTCTGTAAATAATGCTGGTGTTTATGAGATTCCTGCAAGACTCAAGACTCTTCATAACCTTGTCATACAGTATGCTTCTCAGGGTCGATATGAAGTTGCTGTGCCATTATGTAAACAAGCTTTGGAAGATCTTGAGAAAAGTTCTGGCCATGATCATCCTGACGTGGCTACTATGCTCAATATCCTAGCATTGGTATACAGGTCTTTCCATTTACATCTGATTCTATGGCAGGAAAGACATAGCAGTCATTGCAATGTCTCACATGCGGGACAACTGGCTAGTTCTGTTGCTGCTACATTGAACAACTTAGCTGTGTTATATGGAAAGCGTGGCAAATACAAAGAAGCTGAACCACTATGCAAGCGGGCACTTGAAATCAGAGAAAAGGTGCTCGGAAGGAATCACCCAGATGTCGCCAAGCAGTTGAACAACCTTGCATTACTCTGTCAGAATCAAGGCAAATATGACGAGGTTGAGATGTATTATCAGCGTGCTCTAGAGATATACGAGAGCCAGTTAGGCCCAGATGACCCAAACGTTGCAAAGACTAAAAATAACTTGGCATCTGCATATCTGAAACAAGGAAAGTACAAGGCTGCTGAACAGTTATACAAAGAGGTACTAACTCGTGCACATGAGAGAGAATTTGGCAAAGATGACGAGAATAAGCGTGGAAAAGACAATGCTCCTTATGGGGAATATGGTGGTTGGCATAAAGCTGCAAAAGTAGACAGTCCAACTGTTACAACTACTCTAAGAAACCTGAGTGCTTTGTACCGAAGACAAGGCAAGTTTGAAGCTGCAGAAACGCTAGAAGAATGTGCGAACAGATCAAGAAAGAACGCAGGGCCCCTCGACACAGTTCACCAGTCACAATTAGCAGCTATCCTGGGGTCAGATTTTCCAAGCAATAGTGCAGCATCGATCTCCGGTGTTTCAGTCGGCAGTTCGAGTTCAAGCGGCATCGGCACTTCAAGAGCATCTTCGGCATCAAGTAAATGCGACGAAGAGACATCACAACGAGAGGATGAGGATAAGAAGGGCAAGAAAGACAAGACTACATTATCCAGGTTGAAAAGAACTTTCAGCAACCGTGGTCAGAAACTGATGGAGAAAATTGGAGGCGGAAAACTTCAACGTTCAACATCGCGTGAAAATCTCGTCGCTCAGTCCAAATTGCAGCAATCAGAAAGGATTTCTAGGAGCACCCCCATGCTTGCACAAATCGTACCACCAGAAAAGGGATCTTCCCGATCCAGGCATTCACGTTCGTCAAAAGAAAGTAAAGAGAGCTTATAATGCACGAAAGATCACCCATTTCACATGAGGGTTACACAGAGTTACATATGATTACAGAACTTGGTTGATAGTTACTTTCATTCAGTTACCAAGGCTTACGTTGGTACGTTATGAGTAATTATTGTTCTTTTACTTAACTATGATTATGAGGTAGAGGTAAATGACAAAAAAGATCGTTTGCTTATTATTGTAATATATTTGTTCTTGTTGATAATTTATTTGATTGATGGTAGGGTTTGTGTTGTTGACAAATCCTCTGGGATGTTGACCATTCTCAATAGAATTGGCTGTCCTTAGATGTTAGCGAACCGAACGATATTTCCAAGCTCTCCGCTGGAGTCTAcattcacatgataccggggaaggaatttgaccgtaaagaaatcatcgcggtctccccaagaatgcgatgccaaagaaatgtaggtgcaccttataagaatcgatgagccttattttaaaagcgtcgaataatgttccgttcgttcattgttttcgagtgtttatacgatgccgttgtcaaaatgtgtcggttagagttccgtttacaaaatctaccgttttcaaaATCTGCCGGCAAAAAGTGTGCTGTTTTTTGTGAACGCATACCAAACCATGATCATTTGTGGCTCCAAAGTCGAATTTTTCCTGATTTAAAAGTCATTTCCGGCCTACTCATTTATTTTGCTTTTCATTTGGCACGCAAGGGATCATGGTTAACGATGGGTCTTTAAGTTGTTTGCAATTATTCTCGGGGCTCCTGTCGTGATAAAAATTTCCCTTCATTCCTTATCTGAAATAAATAGTGCTCCCTTGGCCTGTTGTAGGCAGGCTTCACAGGTCTGTTCACAGGCTCCTATAGTGCTTCCATGGAAAGCTGTTAATCATTGTCCAAACAACCAAACAATCCAAACTTGTTTATAAACATTCGAGGCTTCACTTGTGAAAATCGGACTTATATAAATCTTCGTGTGAATGTTTGAAAACCACCAAAGGTTTGATCAGATTATTTTCTTGATATTGAAACTTCTTTCTCGTGCGATTTTTTCACGGATGAAGTTAACCCCAGAGGCGATTGTTGTTTTGTCTCGCAGGATCAAGGTGGTGATTGTTTCAGCCCTGTTTTAAAGGATTTCGAAATGACCTTCAGAAAATCTCCTATATCTTAGAGCAGGAATTGTCGACTCGAGAAACGTTAATCTTTCAAAATCTAATTGAACACGTCTACTACCAAACAAGTCATTTTCCAATATTATCCAAAATGTAAAATATTAGGCTTGAAGTGAAAGGTTTGTGCCTCAAGCTTAACAACAGCCTCCCCTTGGTGTTTCATTCCACAGCGTTGTGAGCGTATTCCCCTACCCCTTTCCTAGCGAGCAAAGGGAGAACCCTGTTAGAGAGCCATTGTCCCCCAGCATCCTATGTGGGCACCCTGCAATTTCAGACTGTCTGTAGATCAAAGTTTGCCCAAATGGAAAATATAGATCAACATTGCAGCGGCTGGTGTAATCTGCATAATGCAGGTTGCACAAAGCAGGTTGCAGGTTATCAGTTATGGGCAAGGGCTGTATGGCCGTAGTAAGTAGTAAGACAAATGTTATGGAATTTTGGGGCTATTTTGGACAACTCTTACTTACTACTTACTATGGTCATACAGCCCTTGGCCATAAATGATAACCTGCAGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR002151 all species →	Family	Kinesin light chain	Interproscan
IPR015792 all species →	Repeat	Kinesin light chain repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45783 all species →	KINESIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10407	KLC; kinesin light chain	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.