Detailed information of scaffold121.g197.t1 in Morbakka virulenta

Genomic Location: scaffold121:1273771...1282031
NR annotation: MCB1067865.1, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Simkania sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6MAY1Uncharacterized RNA methyltransferase pc1544 OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=pc1544 PE=3 SV=1
P55137Uncharacterized RNA methyltransferase CT_742 OS=Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx) OX=272561 GN=CT_742 PE=3 SV=2
P58106Uncharacterized RNA methyltransferase TC_0118 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=TC_0118 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05958tRNA_U5-meth_trtRNA (Uracil-5-)-methyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR030390Active_siteRNA methyltransferase TrmA, active siteInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR010280Family(Uracil-5)-methyltransferase familyInterproscan
IPR030391Conserved_siteRNA methyltransferase TrmA, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11061RNA M5U METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0070041Molecular FunctionrRNA (uridine-C5-)-methyltransferase activityInterproscan
GO:0070475Biological ProcessrRNA base methylationInterproscan

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