Detailed information of scaffold121.g221.t1 in Morbakka virulenta

Genomic Location: scaffold121:1392509...1399858
NR annotation: MCB1072047.1, DNA-directed RNA polymerase subunit alpha [Chlamydiia bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9Z7T0Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae OX=83558 GN=gap PE=3 SV=1
Q6ME42DNA-directed RNA polymerase subunit alpha OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=rpoA PE=3 SV=1
Q9PJN6Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=gap PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00344SecYSecYFamilyInterproscan
PF00333Ribosomal_S5Ribosomal protein S5, N-terminal domainDomainInterproscan
PF00044Gp_dh_NGlyceraldehyde 3-phosphate dehydrogenase, NAD binding domainDomainInterproscan
PF00411Ribosomal_S11Ribosomal protein S11FamilyInterproscan
PF01193RNA_pol_LRNA polymerase Rpb3/Rpb11 dimerisation domainDomainInterproscan
PF03719Ribosomal_S5_CRibosomal protein S5, C-terminal domainDomainInterproscan
PF03118RNA_pol_A_CTDBacterial RNA polymerase, alpha chain C terminal domainDomainInterproscan
PF02800Gp_dh_CGlyceraldehyde 3-phosphate dehydrogenase, C-terminal domainDomainInterproscan
PF01000RNA_pol_A_bacRNA polymerase Rpb3/RpoA insert domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011773FamilyDNA-directed RNA polymerase, alpha subunitInterproscan
IPR002208FamilySecY/SEC61-alpha familyInterproscan
IPR005712FamilySmall ribosomal subunit protein uS5, bacterial-typeInterproscan
IPR020830Active_siteGlyceraldehyde 3-phosphate dehydrogenase, active siteInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR001971FamilySmall ribosomal subunit protein uS11Interproscan
IPR013810DomainSmall ribosomal subunit protein uS5, N-terminalInterproscan
IPR006424FamilyGlyceraldehyde-3-phosphate dehydrogenase, type IInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR023201Homologous_superfamilySecY domain superfamilyInterproscan
IPR036643Homologous_superfamilyDNA-directed RNA polymerase, insert domain superfamilyInterproscan
IPR036967Homologous_superfamilySmall ribosomal subunit protein uS11 superfamilyInterproscan
IPR020828DomainGlyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainInterproscan
IPR011263DomainDNA-directed RNA polymerase, RpoA/D/Rpb3-typeInterproscan
IPR005324DomainSmall ribosomal subunit protein uS5, C-terminalInterproscan
IPR036603Homologous_superfamilyRNA polymerase, RBP11-like subunitInterproscan
IPR011260DomainRNA polymerase, alpha subunit, C-terminalInterproscan
IPR020829DomainGlyceraldehyde 3-phosphate dehydrogenase, catalytic domainInterproscan
IPR011262DomainDNA-directed RNA polymerase, insert domainInterproscan
IPR020831FamilyGlyceraldehyde/Erythrose phosphate dehydrogenase familyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR018192Conserved_siteSmall ribosomal subunit protein uS5, N-terminal, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10836GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0015031Biological Processprotein transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006006Biological Processglucose metabolic processInterproscan
GO:0050661Molecular FunctionNADP bindingInterproscan
GO:0051287Molecular FunctionNAD bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

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