Gene detail

Detailed information of scaffold121.g233.t1 in Morbakka virulenta

Genomic Location: scaffold121:1475539...1478775
NR annotation: MCB1080855.1, hypothetical protein [Chlamydiia bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold121.g233.t1

ATGAGCAATTCAATCTTTCACAAAGCTTTGCTTTCGAGCATCTTGGTTCTTTCCTTTACGTCAATTCCATCTGCCTTTGCAAATGCAAAAACGGAAGTTATGCATGCACAAACTGAATCCGATGAAGAAGCTTTTCTCATCCGTCGCATCGCAGAATTCTGGAAAGATGGTGACTATGGAATTGTAAAAACCCAAATTCTCGACTTTTTAGATCAGTATCCAGAAAGCCATTTAAAAGATTATTTTCTTGGAATTTTAGGAGATATATATCTTCAAGAAAATCACTATAAAGATGCTCTTGTGACCTATCAGCACATTTATGATCCGGTTGTCGTTGAAAAAATCATCCTGAATAAACTTCAGTGTTACTATGAACTCGATCAATTTGAAGAATTGTCAAAAGAAGGAACATGCTTCGTTGGTGAAAGTTCCCCTCATATTGAAAGCAGAAAACAAGAACTCTACTTTCTTTTAGGGGAAGCTTATTTTAGACAAGCTCTTCTTAACACAAACTCGAATCAAAGACAAGATCTTGCGCATGAAGCCAAAGGTTATTACAATAAGCTTGAAAAAGGTCAGTATGAGAAAATTTCTCAATTTGCTCTGGCTGAGATCCACGCTATTCTTGGAAATCATAAGCTAGCTGCGGAATCTTACTACGAACTGGCTGAAAAGTATCCCGACATGAGAGAAGACCTTCTCTTTCAGGTTGCCAGTTTACAAGCTAATTACAACCGTATCGACGCCACACGCACTTTCAATGAAGTTAAAGAAATGGAAGGAAAAAGATCCCAAGAAGCGGCCTTTAACCTCATGGTCCTTCTTTTTCAAACTGAAGAATACAATCAAGTTATTGCAAGTGCTGATAAAGTAGCCCCCTATGTCCCTGAAAACTACATGCCTACCTTTTACTTCATCTTAGGGAAAAGTTATTTTTCTCTTGGCAACTATAAAAATGCGATTGACTCACTTTCGCATTATGTTGAATCAGAATTTGTTCCTTCCGATCAACTTAAAAATGCTTTACTCATTCAAATGACTTGCGCACATCAGGTCAATGATCAAGAGCTTTTCAATCAAGCTTTTGAAAAACTCGATACTCTTTTTCCAAATGACCCNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCAATGACCCCGAACTTCCAAAAGCTCTTTTCATGCACGCCATGATTCTTAAAGAACAAGGAGCTATTAGCCATGCGGATGAAAAACTTCAGCAAATTAAAAAGCAGTATAGTGACTTTCAAGAGGAAGAAAGCTTTGCTTTTGAATATGGTCTTCTTGCTCACCAAAATGAGCGCTGGGATGAAAGCTACCATGCTTTTAAAGCTTATGTCACTCAATTTCCAGAAAGCTCACGCCTAGATACTGCCTGGAAGCTCTTTCTTTCGTCATCGCTTAATCTTTATAAGCATGCAAGTGAAACAGAAGAATCGGCTTACTCGAAATCCGACTTCTTCACAGACCTCCAAGCTGTTCTAAAGTATAGTCATTGCTTCAGTGATGAAGAAATGAAAGATTACAGCCTACTTTATGCCAAAACAGCTTATGAGCTTGATTTTTACTCAGAAGCCATCCGCTGCCTTCAAGACTATATCTTCACTTCTAGCACTATTAATGAAGAGTCAGCCTCCCTAGCTCTAGCCGAAGCCCATTTCATTGCAGGTCTCTGCTATGCAGAACTCAATGCTGATATCTCCGCTTTCTGTATGCACTTCGAACAGGCCATGCTCCTCAGTCCCGAACTTTATGATTCGGCTACCACACACCTGCAGCTTTACAACGCCTATATTTCTCTTGCGGGATTTTCAGAGACTGGTAAAATACCATTAGAAAGCCAAGACCAAAAAACGTATGTCGACCAAGCTGCCGAACACTTGCATGAAGCCTTAGGAAAAGGAGACACCCAGGTTAAAAAAGAAAATAAGCTCTGGCTCGCTAACCACTACTACCAGAAAGCAAAAGACTATTTTGAGATACATTGGGCTCATCGAACTACAAGTCACCCTGAAATCTCAAATGAGATTGACCGAGCAATCGGGCTTTATCAACCTCTTTTATTCAAAGGAGGAACTCTAATTATCCTCACTGCCGACAACCTCTTCCTTGAACATGAAGTGCTGAAGTTCGCAAAACTCATGGACTTCCAAAGCCAATATAAAAAGAAACTCGTTGTTATAAAGAGTCTCCTAGAGCAACAAAGCCAAAAACCCGAACTCAATTGGAACAGTCAAAAAGAAGCGCTTTTTGAGCTCGCAACAGCTTATGACTCTCTTGGCGATTATCAGAAAGCCTTCGAAACCTTTAACTTTATCAACGTATCTTCAAAGCACTTTCCTACAAAGATAGCCAATACATCCACTCTTAAGTCTGCACGTATTCACTTCCAACTTCTCGACAAAGATCTAAAACACGAAACAAATGAAGAAGTTCTTGCGATTCTTAACGACTTGAAAGAGCTTCAAATCCGAAAAAATGCAGCTTGTGAACCGATTCATCTGGAAGCAGCCTTGGATTATGCGCAAATCCGCTCTGAAATTTCAAATAGTGAGCAACGCGATTCGCGCTACCTATTTTTCCTTAACCGAATCAAAGATGATTTTACTTCTCAAGAAGACCTTGTCACGCAAGATTACTTAGTGAGCCTAAATCGAGACCCGGCAAAGAAACAAATTTTCGATTCCTATATGAAATATATTGAAGCCGAAAAGTTACGTATTGAGGCTAAAAAGCTCTACCAAGAAGAACATTTAAATGAAATGGAAGAATTTCACGAAAATGCTTTAACCCTATACAATGAGATTAAGAATGATCCTACGACACCGCAGCATCTCTTTGCTCGAATCACCCAAAGCATACAGGATATCAATGCCTTAAATGCTTACTAA

Transcript

scaffold121.g233.t1

CGCTAAAGAGAAAAATGGATTGTACTCAGGGGTATTATTTGATAAATATCTTATAGTGAGTATAATCAAAAAAAACTTCAAAGGGCAACCAAAACGATAGGGACAAACTCTATGAGCAATTCAATCTTTCACAAAGCTTTGCTTTCGAGCATCTTGGTTCTTTCCTTTACGTCAATTCCATCTGCCTTTGCAAATGCAAAAACGGAAGTTATGCATGCACAAACTGAATCCGATGAAGAAGCTTTTCTCATCCGTCGCATCGCAGAATTCTGGAAAGATGGTGACTATGGAATTGTAAAAACCCAAATTCTCGACTTTTTAGATCAGTATCCAGAAAGCCATTTAAAAGATTATTTTCTTGGAATTTTAGGAGATATATATCTTCAAGAAAATCACTATAAAGATGCTCTTGTGACCTATCAGCACATTTATGATCCGGTTGTCGTTGAAAAAATCATCCTGAATAAACTTCAGTGTTACTATGAACTCGATCAATTTGAAGAATTGTCAAAAGAAGGAACATGCTTCGTTGGTGAAAGTTCCCCTCATATTGAAAGCAGAAAACAAGAACTCTACTTTCTTTTAGGGGAAGCTTATTTTAGACAAGCTCTTCTTAACACAAACTCGAATCAAAGACAAGATCTTGCGCATGAAGCCAAAGGTTATTACAATAAGCTTGAAAAAGGTCAGTATGAGAAAATTTCTCAATTTGCTCTGGCTGAGATCCACGCTATTCTTGGAAATCATAAGCTAGCTGCGGAATCTTACTACGAACTGGCTGAAAAGTATCCCGACATGAGAGAAGACCTTCTCTTTCAGGTTGCCAGTTTACAAGCTAATTACAACCGTATCGACGCCACACGCACTTTCAATGAAGTTAAAGAAATGGAAGGAAAAAGATCCCAAGAAGCGGCCTTTAACCTCATGGTCCTTCTTTTTCAAACTGAAGAATACAATCAAGTTATTGCAAGTGCTGATAAAGTAGCCCCCTATGTCCCTGAAAACTACATGCCTACCTTTTACTTCATCTTAGGGAAAAGTTATTTTTCTCTTGGCAACTATAAAAATGCGATTGACTCACTTTCGCATTATGTTGAATCAGAATTTGTTCCTTCCGATCAACTTAAAAATGCTTTACTCATTCAAATGACTTGCGCACATCAGGTCAATGATCAAGAGCTTTTCAATCAAGCTTTTGAAAAACTCGATACTCTTTTTCCAAATGACCCNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCAATGACCCCGAACTTCCAAAAGCTCTTTTCATGCACGCCATGATTCTTAAAGAACAAGGAGCTATTAGCCATGCGGATGAAAAACTTCAGCAAATTAAAAAGCAGTATAGTGACTTTCAAGAGGAAGAAAGCTTTGCTTTTGAATATGGTCTTCTTGCTCACCAAAATGAGCGCTGGGATGAAAGCTACCATGCTTTTAAAGCTTATGTCACTCAATTTCCAGAAAGCTCACGCCTAGATACTGCCTGGAAGCTCTTTCTTTCGTCATCGCTTAATCTTTATAAGCATGCAAGTGAAACAGAAGAATCGGCTTACTCGAAATCCGACTTCTTCACAGACCTCCAAGCTGTTCTAAAGTATAGTCATTGCTTCAGTGATGAAGAAATGAAAGATTACAGCCTACTTTATGCCAAAACAGCTTATGAGCTTGATTTTTACTCAGAAGCCATCCGCTGCCTTCAAGACTATATCTTCACTTCTAGCACTATTAATGAAGAGTCAGCCTCCCTAGCTCTAGCCGAAGCCCATTTCATTGCAGGTCTCTGCTATGCAGAACTCAATGCTGATATCTCCGCTTTCTGTATGCACTTCGAACAGGCCATGCTCCTCAGTCCCGAACTTTATGATTCGGCTACCACACACCTGCAGCTTTACAACGCCTATATTTCTCTTGCGGGATTTTCAGAGACTGGTAAAATACCATTAGAAAGCCAAGACCAAAAAACGTATGTCGACCAAGCTGCCGAACACTTGCATGAAGCCTTAGGAAAAGGAGACACCCAGGTTAAAAAAGAAAATAAGCTCTGGCTCGCTAACCACTACTACCAGAAAGCAAAAGACTATTTTGAGATACATTGGGCTCATCGAACTACAAGTCACCCTGAAATCTCAAATGAGATTGACCGAGCAATCGGGCTTTATCAACCTCTTTTATTCAAAGGAGGAACTCTAATTATCCTCACTGCCGACAACCTCTTCCTTGAACATGAAGTGCTGAAGTTCGCAAAACTCATGGACTTCCAAAGCCAATATAAAAAGAAACTCGTTGTTATAAAGAGTCTCCTAGAGCAACAAAGCCAAAAACCCGAACTCAATTGGAACAGTCAAAAAGAAGCGCTTTTTGAGCTCGCAACAGCTTATGACTCTCTTGGCGATTATCAGAAAGCCTTCGAAACCTTTAACTTTATCAACGTATCTTCAAAGCACTTTCCTACAAAGATAGCCAATACATCCACTCTTAAGTCTGCACGTATTCACTTCCAACTTCTCGACAAAGATCTAAAACACGAAACAAATGAAGAAGTTCTTGCGATTCTTAACGACTTGAAAGAGCTTCAAATCCGAAAAAATGCAGCTTGTGAACCGATTCATCTGGAAGCAGCCTTGGATTATGCGCAAATCCGCTCTGAAATTTCAAATAGTGAGCAACGCGATTCGCGCTACCTATTTTTCCTTAACCGAATCAAAGATGATTTTACTTCTCAAGAAGACCTTGTCACGCAAGATTACTTAGTGAGCCTAAATCGAGACCCGGCAAAGAAACAAATTTTCGATTCCTATATGAAATATATTGAAGCCGAAAAGTTACGTATTGAGGCTAAAAAGCTCTACCAAGAAGAACATTTAAATGAAATGGAAGAATTTCACGAAAATGCTTTAACCCTATACAATGAGATTAAGAATGATCCTACGACACCGCAGCATCTCTTTGCTCGAATCACCCAAAGCATACAGGATATCAATGCCTTAAATGCTTACTAAGACTCAGATAAGAGTACCAATATGGGAAAGTTTTCCTCCTCTTTACAAAATAGCAAACCTCTTTTGCTTCTATCCCTAGCAGTTTCCTTAGCCCTACATGCAGGAGGCTTGTACTTGCTATTTAAGTATCCCTTTGCAGTTTTATCTGCCTCAACTCCCCCGCCTCTAGAACTTTCATCTCAGTCATCACAAATCGAAGAAAATATTAAAATCGAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14023	HRD3; ERAD-associated E3 ubiquitin-protein ligase component HRD3	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala