Gene detail

Detailed information of scaffold121.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold121:20628...38514
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold121.g4.t1

gtgcagattcaaagattcaaagaggctctttgaaaaggttgtggggagatgggagattggctgatggcatggcggacggcctagccacaaaacagctgcttggtttgttccaatatcacctttgtgaattgtgaataagaagagatcgaagatggagcgagtggaatatgatatggatacctcagggggtatcatggagcaaatccaagcaattattgcacccccacattcagctgaagaaaggagaagatacatcaaagagaaagaacagaaagaacaaacatatgcaagaaaacatggaaacagaaatggcggaaggacaataaacagagactgttgtgatagctgcaaggaaggaggagaccttctttgttgtgatcgatgccctgcttcatttcatttccagtgctgcaacccacctttagaggaagatgatatcccaactggtgaatggatttgtaatgaatgcaaagctgcattgaagcaggaaaggattgacaagcagcagaaacaagatgcccctaaagaagagccaaaaacatcacaagaagccccgttggttcagccactattgactaaaccagagcttgtttttcctcatttgacaaagttcttcaaagacaaaaatccaaaagaatttgagcttccaattgaacttcaagattttaccgtattcccaggtgatagaaagattcgcaatggtaaatccaatgacagtggaaagagtagcagaagggaagatcaggatgaaaacattgagaggctttgctttgcatgctccagggttgccagtcctagcacaatggctgcttgtgatttctgcccactcatatttcatgttgactgtcttcatccgccaatggtttctccacctacagctttgtggatgtgtccaaaccatccagaacaatatgaggccaatctcaaagatcccagatacagtgtgcgaatggatgtgactgaagatcttcgtaaaaatatcaaccagaataccattgttttgaattttctcagacgtgctaagagggcaaggatactatctaatcgcaaaaagaaaattcaaaagaggatgattgttccaaatgcaataaaagaagaatacaaaaccccgacgattctacaactaccacaacatattcaacaaatgatgaaaccgctgcctccttatgcaaagccattgagtttgccttcccgaactgaccaagaggagtggctaaagtcgatagttaccttgcaatgtgacatcgcacaagatatggcgaaagcatccgtgcagccgagagagatcacaaaaaatgtcaaaacagaaccaaaaacgtcgccatctcttgggaaagagaaaataaaagaagagaaagatagttctgaaataactttagagacaaacgagaaaatgtcaatagatgatgatattggtgatgaagtcaccaagaattttggcacaaaaccgagcgaccaaattgcaacaacttcatctgaaaccacggacataaacaaatcaactgaaaaggccaaggaatctcctccatcgaaatcaccaacaacgacaatgcctaagtctgattcgcaaacagaatcaaccccaatctcactaacatcggtcagcaagccaagtcaaagctctgcttcagcacataaaatcattatattagcaacacaatccccttcgagtggaacaaagacttcgaatcaatcattaggagaacaatcaaacctgtcaacatcatctgacacgttaacaaaagcaatgacaatggcttcgaatacatcaaccacgaagtctgttgttatcaaaagttcattgcaaaaccacccgttgccaacgcaaggagcgtcgtttgtgagcagtattacatccgaatcactccaagatcctttgttatctcaacttgacacaagattggttaaagttttggcttttcagcgactgcagcaactacttggtcagtcaaaggtcccacagtcgacaaacaagaagattactgcttcggatatccaagaaattttagcaagtaataaaccaaaaggtcgtgccattgcagcactgtgtccattgaatgcgggcaaaacaatacctatgattcgaagatcgattaacattggtcaaggtaacatttacaatttatagtttctttctgtgttgtctatacagagtacttagatgctttccaacagcaaaaggggctgttcaaagttcttcaccccacgagttccaagatgtttggtgtattttaagtccgaatttgtctgtaagagccacaccaagattcgttttttgnaaatttgcttaagctatgtatttgtactctgctatcacaggtcgtgccattgcagcactgtgtccattgaatgcgggcaaaacaatacctatgattcgaagatcgattaacattggtcaaggtttcgacaacaacgttaccttgacaaattatggccattgtaattacatatcaggcaaacatgcatgtatcttctttgacgaggaagcacgtcagtttgaattgttgaattatagtgaacatgggacgatagttgacaatgtcttgtactcatgtgacttctctgataagccaaacaaacacgtcacttcaagcaatgcgaaacctgacacgaataacaaaggattcgaaaaaggaaagaaaccacccattcatcgaacaaccaaaggacatggcatcgaggctatcacaaatccatgttcatgcagagcctcgggttcaagtcttattggagggagtggtgcaggatgggaaggaactgccgtattgcatcatgggagtttcatcaagtttggttgccttcattttgtctttagtattgctgaagctgcaaccaaaaaacctgacattaaaattcagacagaaac

Transcript

scaffold121.g4.t1

GTGCAGATTCAAAGATTCAAAGAGGCTCTTTGAAAAGGTTGTGGGGAGATGGGAGATTGGCTGATGGCATGGCGGACGGCCTAGCCACAAAACAGCTGCTTGGTTTGTTCCAATATCACCTTTGTGAATTGTGAATAAGAAGAGATCGAAGATGGAGCGAGTGGAATATGATATGGATACCTCAGGGGGTATCATGGAGCAAATCCAAGCAATTATTGCACCCCCACATTCAGCTGAAGAAAGGAGAAGATACATCAAAGAGAAAGAACAGAAAGAACAAACATATGCAAGAAAACATGGAAACAGAAATGGCGGAAGGACAATAAACAGAGACTGTTGTGATAGCTGCAAGGAAGGAGGAGACCTTCTTTGTTGTGATCGATGCCCTGCTTCATTTCATTTCCAGTGCTGCAACCCACCTTTAGAGGAAGATGATATCCCAACTGGTGAATGGATTTGTAATGAATGCAAAGCTGCATTGAAGCAGGAAAGGATTGACAAGCAGCAGAAACAAGATGCCCCTAAAGAAGAGCCAAAAACATCACAAGAAGCCCCGTTGGTTCAGCCACTATTGACTAAACCAGAGCTTGTTTTTCCTCATTTGACAAAGTTCTTCAAAGACAAAAATCCAAAAGAATTTGAGCTTCCAATTGAACTTCAAGATTTTACCGTATTCCCAGGTGATAGAAAGATTCGCAATGGTAAATCCAATGACAGTGGAAAGAGTAGCAGAAGGGAAGATCAGGATGAAAACATTGAGAGGCTTTGCTTTGCATGCTCCAGGGTTGCCAGTCCTAGCACAATGGCTGCTTGTGATTTCTGCCCACTCATATTTCATGTTGACTGTCTTCATCCGCCAATGGTTTCTCCACCTACAGCTTTGTGGATGTGTCCAAACCATCCAGAACAATATGAGGCCAATCTCAAAGATCCCAGATACAGTGTGCGAATGGATGTGACTGAAGATCTTCGTAAAAATATCAACCAGAATACCATTGTTTTGAATTTTCTCAGACGTGCTAAGAGGGCAAGGATACTATCTAATCGCAAAAAGAAAATTCAAAAGAGGATGATTGTTCCAAATGCAATAAAAGAAGAATACAAAACCCCGACGATTCTACAACTACCACAACATATTCAACAAATGATGAAACCGCTGCCTCCTTATGCAAAGCCATTGAGTTTGCCTTCCCGAACTGACCAAGAGGAGTGGCTAAAGTCGATAGTTACCTTGCAATGTGACATCGCACAAGATATGGCGAAAGCATCCGTGCAGCCGAGAGAGATCACAAAAAATGTCAAAACAGAACCAAAAACGTCGCCATCTCTTGGGAAAGAGAAAATAAAAGAAGAGAAAGATAGTTCTGAAATAACTTTAGAGACAAACGAGAAAATGTCAATAGATGATGATATTGGTGATGAAGTCACCAAGAATTTTGGCACAAAACCGAGCGACCAAATTGCAACAACTTCATCTGAAACCACGGACATAAACAAATCAACTGAAAAGGCCAAGGAATCTCCTCCATCGAAATCACCAACAACGACAATGCCTAAGTCTGATTCGCAAACAGAATCAACCCCAATCTCACTAACATCGGTCAGCAAGCCAAGTCAAAGCTCTGCTTCAGCACATAAAATCATTATATTAGCAACACAATCCCCTTCGAGTGGAACAAAGACTTCGAATCAATCATTAGGAGAACAATCAAACCTGTCAACATCATCTGACACGTTAACAAAAGCAATGACAATGGCTTCGAATACATCAACCACGAAGTCTGTTGTTATCAAAAGTTCATTGCAAAACCACCCGTTGCCAACGCAAGGAGCGTCGTTTGTGAGCAGTATTACATCCGAATCACTCCAAGATCCTTTGTTATCTCAACTTGACACAAGATTGGTTAAAGTTTTGGCTTTTCAGCGACTGCAGCAACTACTTGGTCAGTCAAAGGTCCCACAGTCGACAAACAAGAAGATTACTGCTTCGGATATCCAAGAAATTTTAGCAAGTAATAAACCAAAAGGTCGTGCCATTGCAGCACTGTGTCCATTGAATGCGGGCAAAACAATACCTATGATTCGAAGATCGATTAACATTGGTCAAGGTAACATTTACAATTTATAGTTTCTTTCTGTGTTGTCTATACAGAGTACTTAGATGCTTTCCAACAGCAAAAGGGGCTGTTCAAAGTTCTTCACCCCACGAGTTCCAAGATGTTTGGTGTATTTTAAGTCCGAATTTGTCTGTAAGAGCCACACCAAGATTCGTTTTTTGNAAATTTGCTTAAGCTATGTATTTGTACTCTGCTATCACAGGTCGTGCCATTGCAGCACTGTGTCCATTGAATGCGGGCAAAACAATACCTATGATTCGAAGATCGATTAACATTGGTCAAGGTTTCGACAACAACGTTACCTTGACAAATTATGGCCATTGTAATTACATATCAGGCAAACATGCATGTATCTTCTTTGACGAGGAAGCACGTCAGTTTGAATTGTTGAATTATAGTGAACATGGGACGATAGTTGACAATGTCTTGTACTCATGTGACTTCTCTGATAAGCCAAACAAACACGTCACTTCAAGCAATGCGAAACCTGACACGAATAACAAAGGATTCGAAAAAGGAAAGAAACCACCCATTCATCGAACAACCAAAGGACATGGCATCGAGGCTATCACAAATCCATGTTCATGCAGAGCCTCGGGTTCAAGTCTTATTGGAGGGAGTGGTGCAGGATGGGAAGGAACTGCCGTATTGCATCATGGGAGTTTCATCAAGTTTGGTTGCCTTCATTTTGTCTTTAGTATTGCTGAAGCTGCAACCAAAAAACCTGACATTAAAATTCAGACAGAAAC

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46309 all species →	PHD FINGER PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan
GO:0140110 all species →	Molecular Function	transcription regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26244	PHF12, RCO1; transcriptional regulatory protein PHF12/RCO1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.