Gene detail

Detailed information of scaffold122.g34.t1 in Morbakka virulenta

Genomic Location: scaffold122:971353...974142
NR annotation: KAI0243414.1, hypothetical protein LSAT2_011515 [Lamellibrachia satsuma]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold122.g34.t1

atgttgagccctgagactaggaaatgcctaatcaagtggaatccagtgaatgagaggatcattagtgctagattcaattcaaaatatgtaaaagccaccattattcagatctacagccctacaaatgatgcagatgaagaggagaaggatgatttctacgaacaattacagaaagagattgaatcaacaccgaagcatgacatgttgattgttatgggagacgcaaatgccaaagtgggttgtaacaacaaaaaccatgagaaagttttagggaaggaaggcttaggcgtcatgaatgagaatggcgaaagacttattgagttatgcgaagaaaatgatcttgtgattggaggcacatgcttcaaacacaaaaatattcacaaatacacatggacctcaccaaacaacagagacaaaaaccaaattgatcacttcatcatcaatggtagatacaggaggtctctcgctgatgtacgagccatgagaggtgcagatgctggaactgaccataaccttgtggtcggcaaagtgaagctcaggctttcgagacacaaactcaagaacaccagcagaagggcaacattcaacactgcacttctgaaacaaaaggaaatccaaaagcaattcacagtagagttgaaaaacaggtttgaaacactggaagagagcatggaaacaaccatggaagaggcaaacatacaaaaacaatgggaagattttaccacaatctacacggagacagctgaaaagatcctgggtaggaaaaggaaggggcataaagagtggataagcagtgaaacttggaaagctatagacgaaaggaagaaagtgaaaaatgagataaactgcgcaagatcagagagaattcgtgctatcaaaaaacagaagtatagtgagatggacaagagtgtaaagaaaaaggtcagagaagataaacgtaagatgataaatgggctcgctgaagaagcggagcatgcagcaaaaaacaatgacatgggaactctgtacaggattacgaagctattgtgcaacaagagaaagaaatcagcaactggcgtgagagacaaaactggtaagctactcattgaagatggtcagatacttcaaagatggaaagaacacttcaaagaaatattaaatgttgagaatgaatgtgacaaaaatgtagaggaagatgagtttgagagcggtaatgtcgaaaccatcgaagaaatcaacacagggcccttcacagaagaggaagtgaagatagcagtaaaaaagttgaagagcaataaagcaccaggagtagataacatcagcggagaaatgttaaaagctggaagcaagattacatacaagagattactacacatgttcgaaaaagtgagagagaacatcaatatgccaagtgactggaagaaatcaatgatagctaaagtaccaaagaaaggtgaccttaccaaatgcgacaatagtagaggaatatccctgctctccatacctgggaaagtcttcggcagagttgttttagaaagaatcaggaaaggagcagaagaaaagctgagaaatgagcaggcagcatatagaaaaggacatgggacagctgagcagattttcatacttcgaaatattgttgaacagtgcattgagtggcaagcatcactgtacattaactttattgacttccgtaaagctttcgatagcatcgacagagagaagctctggaagattctgaagttttatggagttccagatctcttcatagagatcataaaggaaatgtacagagaaagtagtagttgcgtcattaacaacggggagacatcagagtggttctctgtaaagactggagttcgacaaggctgtgtgatgtcaggcttcctcttcattattactatggattggatcttgaggaaagcaacaacggcaaagaaaacaggaataagaaggaagtttagcacccagcttgaagacttagactatgcagacgatatcgctctcacatccagcaagcaccaacatatgcaggaaaaaactgaaaagctatgtaaatatgctgaaagcgtcggtctcaaaaaccataaaatgatagctatagagtag

Transcript

scaffold122.g34.t1

AACAGAATAGAAGGTTTTTTTATTTTGTTTCCATTAAAGCAATGGGTGTCAGCAGTGCAATTTTTTAATTGCACTAAGAATAGCAAACtcaccccttctcgtaaaacaaccaccgattacggaaacttggacagcaaacaaaactacctatggtcacagaaccatgtcgtgtgaaatccctgaagataatgacctcagatgggaagacacgcatatgacggctgggggcgaaagcctacggaaagtctctaacctgagaacgacatgcatgagatcacttctaacaccaaaaagatacatccatgtaggatgttggaatgtaagaaccatgtaagaaccatgaaaactgcaataatagcaagggaaatgagaaaataccatctacagataccaggcataagcgaagcaagattaactggtttcggagaagtgaagggcaacactggagagtctgtactgtaatctgggtcagatgaacatcatagaggtgtaggaatcatgttgagccctgagactaggaaatgcctaatcaagtggaatccagtgaatgagaggatcattagtgctagattcaattcaaaatatgtaaaagccaccattattcagatctacagccctacaaatgatgcagatgaagaggagaaggatgatttctacgaacaattacagaaagagattgaatcaacaccgaagcatgacatgttgattgttatgggagacgcaaatgccaaagtgggttgtaacaacaaaaaccatgagaaagttttagggaaggaaggcttaggcgtcatgaatgagaatggcgaaagacttattgagttatgcgaagaaaatgatcttgtgattggaggcacatgcttcaaacacaaaaatattcacaaatacacatggacctcaccaaacaacagagacaaaaaccaaattgatcacttcatcatcaatggtagatacaggaggtctctcgctgatgtacgagccatgagaggtgcagatgctggaactgaccataaccttgtggtcggcaaagtgaagctcaggctttcgagacacaaactcaagaacaccagcagaagggcaacattcaacactgcacttctgaaacaaaaggaaatccaaaagcaattcacagtagagttgaaaaacaggtttgaaacactggaagagagcatggaaacaaccatggaagaggcaaacatacaaaaacaatgggaagattttaccacaatctacacggagacagctgaaaagatcctgggtaggaaaaggaaggggcataaagagtggataagcagtgaaacttggaaagctatagacgaaaggaagaaagtgaaaaatgagataaactgcgcaagatcagagagaattcgtgctatcaaaaaacagaagtatagtgagatggacaagagtgtaaagaaaaaggtcagagaagataaacgtaagatgataaatgggctcgctgaagaagcggagcatgcagcaaaaaacaatgacatgggaactctgtacaggattacgaagctattgtgcaacaagagaaagaaatcagcaactggcgtgagagacaaaactggtaagctactcattgaagatggtcagatacttcaaagatggaaagaacacttcaaagaaatattaaatgttgagaatgaatgtgacaaaaatgtagaggaagatgagtttgagagcggtaatgtcgaaaccatcgaagaaatcaacacagggcccttcacagaagaggaagtgaagatagcagtaaaaaagttgaagagcaataaagcaccaggagtagataacatcagcggagaaatgttaaaagctggaagcaagattacatacaagagattactacacatgttcgaaaaagtgagagagaacatcaatatgccaagtgactggaagaaatcaatgatagctaaagtaccaaagaaaggtgaccttaccaaatgcgacaatagtagaggaatatccctgctctccatacctgggaaagtcttcggcagagttgttttagaaagaatcaggaaaggagcagaagaaaagctgagaaatgagcaggcagcatatagaaaaggacatgggacagctgagcagattttcatacttcgaaatattgttgaacagtgcattgagtggcaagcatcactgtacattaactttattgacttccgtaaagctttcgatagcatcgacagagagaagctctggaagattctgaagttttatggagttccagatctcttcatagagatcataaaggaaatgtacagagaaagtagtagttgcgtcattaacaacggggagacatcagagtggttctctgtaaagactggagttcgacaaggctgtgtgatgtcaggcttcctcttcattattactatggattggatcttgaggaaagcaacaacggcaaagaaaacaggaataagaaggaagtttagcacccagcttgaagacttagactatgcagacgatatcgctctcacatccagcaagcaccaacatatgcaggaaaaaactgaaaagctatgtaaatatgctgaaagcgtcggtctcaaaaaccataaaatgatagctatagagtagccctaacatgtacgccagagggaaaagaaagagaggacgcccacgaaaaacatggcggaggagtgcggaagcagaaagaaatgacctgggatggcaaacatggaacgaagttaggaacatagccaaagacagagagagatggcggaggatgctgtcaagccttatgagccgcccatggctcgaagagaataaacaagaggatatagt

Protein

Uniprot

Uniprot term	Description
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan