Gene detail

Detailed information of scaffold124.g23.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold124:373016...382444
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold124.g23.t2

agtctattcaaatcgtttcttctttcagccgctttggtacccctgatgaattcaaagaactgatagatgaatgtcataaacatgggatcgtcgtcttgctcgatattgttcatagtcatgcatgtaagaatgttctggatggcctgaatctgtttgatggcactgatgcttgcttctttcatagtggacacagaggatatcatccattgtgggatagcagactgtttgactatagcaattgggaagttcttcgtttcctactgtcaaatctgcgttattacatggatgaatttatgttggatggcttcagatttgatggtgtgacttcaatgctgtatcatgaccatggatgtagcactggtttcagtggcgattacagagaatactttggtgttcatgttgatactgaggcactaagttatctgcaattggctaattatatgctgcatgaattgtatccgaattgtgtcactattgcagaggatgtaagtggaatgcctgcactgtgtcgcccagtacacgaaggtggagtcggatttgactatcgacttggcatggccattcccgacaactggatcaagctgttgaaagaaaaaagtgatgatgactggaacatgggacatgtcgtacatactcttgtcaacagaagacatggagaaaaaacaatcgcatacgccgaaagtcatgaccaagcattagtcggagataagacactggcgttttggttgatggataaagaaatgtatacgaatatgtcgactcagacagatttgacgccgattgttgatagggggattgcattgcataaaatgatcagatttataacaatgggcctaggtggtgaaggctacttgaatttcatgggcaacgaatttggtcatcctgaatggcttgacttcccacgacaaggaaatggtgatagctaccatcatgctcgacggcaatggcatttagtgcatgatggcacgttgagatatcggtttttgaatgaatttgataaagacatgcaccatctggatgataaatatcattatttgtcatcaccacaggcctacgtgagtcgtaaagatgaaggagacaaagtgattgttttcgagagagctggtcttctctttattttcaactttcatccaactagaagctacacagattatcgagtaggggtagagaaacctggaaaatataacatagtgttaaattctgatgacccaagatattgtggccatggcagacttgatccaaactgtgatcactttacagagaattttaaacatgataacagatcaaactcaataaaggtcaggaagaaagaaagaaagaaagaaagaaagtccgtcacgctcgttaaagcaattgattaacgttttatctctgctaattggcactgaaataaagaaagcgcacagaaagcgcatacaagacagaagtttcccgcgatcctatagcaacatttgacgtcggcttatttcatgttagacagatttgacaccataagatggataaatcaccacgatgtttaccctggcacaacaacaaatttacccagaattggcacgttcttgacttcattagcagcttaattatgttgaaacnagaaacattctgcagggttccacataagcaattttgcgttatcgtaaatctcacatgacatctaatttgagacagatgcaccaatagtttcatgcacgaactaagcaaactgggggtaatgacttttgattttttgcgtatcatcctcgtttgacataaagatcaaaatattgctttcaaacgattcttgtccttatacaaggcgcttgattttctattgaaggcaactttagcagcaacactcatctctctgactgtagcagcatcaatgatcatttgggcttatggagaaatcaatattcagttttcttatgcttgcttagctcaggtcgtactttgtaatcatccaaaaggatcttatgtttttcttcctttcaggtatacataccttgcagagtggctttggttttagcagtgattgactgaataccatgctagatgcctatgtggtatgcttgctgttgagttgcgcttgtccatagcttatgtcgtccccttcgggaccccgcttccagtttcctctcgtgcttttgaggtactacgtcaaagtaaattaggtcacctattggatcttgtccacagcttggcaggtatcatttggtgtccactgctaggcaatttatcttttggtaataagttgggttgatctcgccattgctagattgatctacagggctgccagaaaactttgtaagtttcgaatttcactagaatgcaattatcggagccatgtgacattttttcctgttgtcacacgcacacaggagaaaccatatcatttgagacgcatgtttccatatcaaatctctacttagatatcattgtttggaaccagggatttcacgatgctttcaagtagtatgttaatctatttgtcagcttaacacaacttgatccttgtaataaatgagcagcaaaaaattgtgatatcaatgaaaaaatcatgttttgatacccttttgaagctcttaataatttcatcggatttcctgtaatcatcaagcattgacggctgaaaccagtagaaaatatgcaaaataaaagcccacttttaactaagaaacgcgttcctgtgtttaaagaatatctcaacaacagtatagacaattttttcaaaatccaccaatacatatgcaaaacacaccctctgtcaagctcaatgcaatgttctaaacattagaatttcttctcctcaaattttttattgataaacttacaaagtagaggtgtggttctgatatcctgcattttttcgaggtattcgtgatttgggcttcttgctaggtgtctacatgatagattcgctacgaatagcatctctgcggttccagttaagaatgctgtcatgttttatgggttttagtgaaattaagaaccgtttagagacgttatctgtctaaagatgtcacatcgatcattaaaatgtcggctgttgaagcattacgattgccggtgatctacatttcaaagagcaaggggcttacgaaaattcatccatttactttggcgcctttttgatattcaggaatatgtcttcttctgtgaaaattcgacaaagttctcagtcaattacatcattaaagggagttgtcaaaaccttagagctgttgttttgtctgcagcattgtgtactgctactttaattctttggaaaggaaaaatcgtcgctttcagtttctgttgaatctttcttaggccctgtttaaacatcgctttttttgccgtttcaaatttaatagatgctgccaaaaact

Transcript

scaffold124.g23.t2

agtctaTTCAAATCGTTTCTTCTTTCAGCCGCTTTGGTACCCCTGATGAATTCAAAGAACTGATAGATGAATGTCATAAACATGGGATCGTCGTCTTGCTCGATATTGTTCATAGTCATGCATGTAAGAATGTTCTGGATGGCCTGAATCTGTTTGATGGCACTGATGCTTGCTTCTTTCATAGTGGACACAGAGGATATCATCCATTGTGGGATAGCAGACTGTTTGACTATAGCAATTGGGAAGTTCTTCGTTTCCTACTGTCAAATCTGCGTTATTACATGGATGAATTTATGTTGGATGGCTTCAGATTTGATGGTGTGACTTCAATGCTGTATCATGACCATGGATGTAGCACTGGTTTCAGTGGCGATTACAGAGAATACTTTGGTGTTCATGTTGATACTGAGGCACTAAGTTATCTGCAATTGGCTAATTATATGCTGCATGAATTGTATCCGAATTGTGTCACTATTGCAGAGGATGTAAGTGGAATGCCTGCACTGTGTCGCCCAGTACACGAAGGTGGAGTCGGATTTGACTATCGACTTGGCATGGCCATTCCCGACAACTGGATCAAGCTGTTGAAAGAAAAAAGTGATGATGACTGGAACATGGGACATGTCGTACATACTCTTGTCAACAGAAGACATGGAGAAAAAACAATCGCATACGCCGAAAGTCATGACCAAGCATTAGTCGGAGATAAGACACTGGCGTTTTGGTTGATGGATAAAGAAATGTATACGAATATGTCGACTCAGACAGATTTGACGCCGATTGTTGATAGGGGGATTGCATTGCATAAAATGATCAGATTTATAACAATGGGCCTAGGTGGTGAAGGCTACTTGAATTTCATGGGCAACGAATTTGGTCATCCTGAATGGCTTGACTTCCCACGACAAGGAAATGGTGATAGCTACCATCATGCTCGACGGCAATGGCATTTAGTGCATGATGGCACGTTGAGATATCGGTTTTTGAATGAATTTGATAAAGACATGCACCATCTGGATGATAAATATCATTATTTGTCATCACCACAGGCCTACGTGAGTCGTAAAGATGAAGGAGACAAAGTGATTGTTTTCGAGAGAGCTGGTCTTCTCTTTATTTTCAACTTTCATCCAACTAGAAGCTACACAGATTATCGAGTAGGGGTAGAGAAACCTGGAAAATATAACATAGTGTTAAATTCTGATGACCCAAGATATTGTGGCCATGGCAGACTTGATCCAAACTGTGATCACTTTACAGAGAATTTTAAACATGATAACAGATCAAACTCAATAAAGgtcaggaagaaagaaagaaagaaagaaagaaagtccgtcacgctcgttaaagcaattgattaacgttttatctctgctaattggcactgaaataaagaaagcgcacagaaagcgcatacaagacagaagtttcccgcgatcctatagcaacatttgacgtcggcttatttcatgttagacagatttgacaccataagatggataaatcaccacgatgtttaccctggcacaacaacaaatttacccagaattggcacgttcttgacttcattagcagcttaattatgttgaaacnagaaacattctgcagggttccacataagcaattttgcgttatcgtaaatctcacatgacatctaatttgagacagatgcaccaatagtttcatgcacgaactaagcaaactgggggtaatgacttttgattttttgcgtatcatcctcgtttgacataaagatcaaaatattgctttcaaacgattcttgtccttatacaaggcgcttgattttctattgaaggcaactttagcagcaacactcatctctctgactgtagcagcatcaatgatcatttgggcttatggagaaatcaatattcagttttcttatgcttgcttagctcaggtcgtactttgtaatcatccaaaaggatcttatgtttTTCTTCCTTTCAGGTATACATACCTTGCAGAGTGGCTTTGGTTTTAGCAGTGATTGACTGAATACCATGCTAGATGCCTATGTGGTATGCTTGCTGTTGAGTTGCGCTTGTCCATAGCTTATGTCGTCCCCTTCGGGACCCCGCTTCCAGTTTCCTCTCGTGCTTTTGAGGTACTACGTCAAAGTAAATTAGGTCACCTATTGGATCTTGTCCACAGCTTGGCAGGTATCATTTGGTGTCCACTGCTAGGCAATTTATCTTTTGGTAATAAGTTGGGTTGATCTCGCCATTGCTAGATTGATCTACAGGGCTGCCAGAAAACTTTGTAAGTTTCGAATTTCACTAGAATGCAATTATCGGAGCCATGTGACATTTTTTCCTGTTGTCACACGCACACAGGAGAAACCATATCATTTGAGACGCATGTTTCCATATCAAATCTCTACTTAGATATCATTGTTTGGAACCAGGGATTTCACGATGCTTTCAAGTAGTATGTTAATCTATTTGTCAGCTTAACACAACTTGATCCTTGTAATAAATGAGCAGCAAAAAATTGTGATATCAATGAAAAAATCATGTTTTGATACCCTTTTGAAGCTCTTAATAATTTCATCGGATTTCCTGTAATCATCAAGCATTGACGGCTGAAACCAGTAGAAAATATGCAAAATAAAAGCCCACTTTTAACTAAGAAACGCGTTCCTGTGTTTAAAGAATATCTCAACAACAGTATAGACAATTTTTTCAAAATCCACCAATACATATGCAAAACACACCCTCTGTCAAGCTCAATGCAATGTTCTAAACATTAGAATTTCTTCTCCTCAAATTTTTTATTGATAAACTTACAAAGTAGAGGTGTGGTTCTGATATCCTGCATTTTTTCGAGGTATTCGTGATTTGGGCTTCTTGCTAGGTGTCTACATGATAGATTCGCTACGAATAGCATCTCTGCGGTTCCAGTTAAGAATGCTGTCATGTTTTATGGGTTTTAGTGAAATTAAGAACCGTTTAGAGACGTTATCTGTCTAAAGATGTCACATCGATCATTAAAATGTCGGCTGTTGAAGCATTACGATTGCCGGTGATCTACATTTCAAAGAGCAAGGGGCTTACGAAAATTCATCCATTTACTTTGGCGCCTTTTTGATATTCAGGAATATGTCTTCTTCTGTGAAAATTCGACAAAGTTCTCAGTCAATTACATCATTAAAGGGAGTTGTCAAAACCTTAGAGCTGTTGTTTTGTCTGCAGCATTGTGTACTGCTACTTTAATTCTTTGGAAAGGAAAAATCGTCGCTTTCAGTTTCTGTTGAATCTTTCttaggccctgtttaaacatcgctttttttgccgtttcaaatttaatagatgctgccaaaaact

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02806 all species →	Alpha-amylase_C	Alpha amylase, C-terminal all-beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006048 all species →	Domain	Alpha-amylase/branching enzyme, C-terminal all beta	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43651 all species →	1,4-ALPHA-GLUCAN-BRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0043169 all species →	Molecular Function	cation binding	Interproscan
GO:0003844 all species →	Molecular Function	1,4-alpha-glucan branching enzyme activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold124.g23.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.