Gene detail

Detailed information of scaffold1252.g2.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1252:2243...43104
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1252.g2.t2

tctttatatgatttcacacaataatcaaattcatgttgcatttgttcttcaaaggaagagccgatgaaaaactcccttctatgcaggtttttactgtaactgtagacccctatcaaatttctatttccccacccgcatccttttcctttccgccagactaaagaagtctgggtttgaaaatgacaaatcgttcgatcccaggtccttttccggcggccattttggacaactcactgctcaatgtacagagcaactgaaggaatttcatgaatttctcctgatttcatccgcaaatagacaacaaaaaacaagataaagctaataaaagacgtggttggcaatttaaagacattttaaagcagcgaagatgtggaaatttagggaaattcaagacaaagtggccaatgttgttatgaactattcagaggtagagtcaaaagttagagaagcaacaaatgatgatcaatggggccctcatgggtctctcatgaatgacatagcaaagtatacatttatgtatgaaagttttcctgaagttatgggtatgctttggaagagaatgttacttgaaaagaaaaattggagaagaacttacaagtctctactgttgttacattacctattgaggaatggttcagaaaaagttgtttcaagtgctagagatcatttgtatgacatgagacagttggaaaattatcaatgcttggatgaagctggcaaagatcaaggcttaaacgttcgacacaaagtcaaagaattgatagatttcgtgcaagataatgatcgtctgaggcaagaaagaagaagagcgaaacaaaacagagnagtcaaagaattgatagatttcgtgcaagataatgatcgtctgaggcaagaaagaagaagagcgaaacaaaacagagaaaagtacattggattgtcttctgatgttgtctcagatggcttttacattcgacacaaagtcaaagaattgatagatttcgtgcaagataatgatcgtctgaggcaagaaagaagaagagcgaaacaaaacagagaaaaatacattggattgtcttctgatgttgtctccgatggcttttacagtgacaaatatgacaaagaaccaagtggaagaactggtaaagatgactttgattcaatggatcttcagagaaagagtaaattgggtgaattcaaggataggattggacagaaattaggtgaacttcgacctggaaagagagattataaagattatcatgaagaatcgaaaggtggcggcggtagaaatgcatacagggacgagccagaagacggtgaagaagtctcggaggagaaagacgcagccgatgaagacattttctcatacaaatcatcagcactaacttcttctgatgctagttcagaaaagggtgcctcagcatcgcccacacctcctcctacacgaaaaccaatgaagaaaatcgacttaggggctgcagctacgcttgtcagtgttgcacaaactgcgaagccgcaagcgacagaaaacggatctacttcggagcagcttaacagtaaaaagaacacatctgctatgaatgatctagtcgatttgatgaacacaggacctaaagatgctccattagtgccagggaatgtatcatcagaacctgatttatttggtaacttttcaagtgcacagcctacagctcaacaaagcaatgacgattttgcagattttagtgcatttaatgcaaccaaaccaacaacgccagatgaattcggagatttcaatgcctttggcaatacatcgacgtctactgcacaggcatctacatccttgcaggcccttattcattactacataattgatgtgttttgcattttcatcatcgaaatgttactttgtctttcagctcaacaaagcaatgatgattttgcagattttagtgcatttaatgcaaccaaaccaacaacgccagatgaattcggagacttcaatgcctttggcaatacatcgacgtctactgcacaggcatcaacatccttgcagagctttgatctactcggctcaagtgcatcaataatcagtcaaccacaagcacctacgatacaaacaatgaacacactagggaatttagcattcagtatgacgtcaccttaccagcctgttgcagctgcgccacaaggcatgacacagtcaatgactacgccacaaatgaaccaaagtaatctagctgtcaatcaacctaaatcatcgggatcttccccgaaagagaagtcatcgctgtggagtaacactggcctagatatcagcttagatacactcagtcctgttgcgtcaagagacaaaccgttgcaaccaagcatgaaccaattgaccaatcagcaagcgatgccaggtcagatgactaatatgatgccacaacaacaacagcaacaacaagtgaatatgcaaggtatccaagcaactaatatggcttctatgaactctggtatgagtaatatgaatctaggaactggtatgggccgccctgtacaaatgggcaatcaacctatgcagcaaatgggtgcacaaataggagcccaacagatggcgggccctcagcaaatgggcatgagtatgggtgtcggtatgaatatgggaatgatgggtaatcaaggtaacctaggtaaccagaacatgggtatggcacccggcatgcagtacaattaccaaaatatgggtatgcgaatgccgatgcaagcacagatgtatcagacaccgatgcaaggaactatgggacagtttaggtcttaagttgatttatattagttaatttaataagataaaataggccgcgttgcgtcaacgctccgtcatttcatgcattcaacgatgtgatttgtatctgtctaagaagggcactaagggcgactgtgcaatcatgttatattgtatacgattctcttctgtatgtaaatgcgtatttttttaacgtagacgttattgttattcgctttaagccggttctcaactggaggaattatttcctgcgaatcgaagtgtttcgagtgtaagtattctcagttgaaattagattcactccggcggttctcttctatgaaaaagtgagttcgatcagtttcgaccatatttctgcgtgctcaatatttttcttgctgaaaaattattcgcgcgaaaaaactcaccgatggggg

Transcript

scaffold1252.g2.t2

TCTTTATATGATTTCACACAATAATCAAATTCATGTTGCATTTGTTCTTCAAAGGAAGAGCCGATGAAAAACTCCCTTCTATGCAGGTTTTTACTGTAACTGTAGACCCCTATCAAATTTCTATTTCCCCACCCGCATCCTTTTCCTTTCCGCCAGACTAAAGAAGTCTGGGTTTGAAAATGACAAATCGTTCGATCCCAGGTCCTTTTCCGGCGGCCATTTTGGACAACTCACTGCTCAATGTACAGAGCAACTGAAGGAATTTCATGAATTTCTCCTGATTTCATCCGCAAATAGACAACAAAAAACAAGATAAAGCTAATAAAAGACGTGGTTGGCAATTTAAAGACATTTTAAAGCAGCGAAGATGTGGAAATTTAGGGAAATTCAAGACAAAGTGGCCAATGTTGTTATGAACTATTCAGAGGTAGAGTCAAAAGTTAGAGAAGCAACAAATGATGATCAATGGGGCCCTCATGGGTCTCTCATGAATGACATAGCAAAGTATACATTTATGTATGAAAGTTTTCCTGAAGTTATGGGTATGCTTTGGAAGAGAATGTTACTTGAAAAGAAAAATTGGAGAAGAACTTACAAGTCTCTACTGTTGTTACATTACCTATTGAGGAATGGTTCAGAAAAAGTTGTTTCAAGTGCTAGAGATCATTTGTATGACATGAGACAGTTGGAAAATTATCAATGCTTGGATGAAGCTGGCAAAGATCAAGGCTTAAACGTTCGACACAAAGTCAAAGAATTGATAGATTTCGTGCAAGATAATGATCGTCTGAGGCAAGAAAGAAGAAGAGCGAAACAAAACAGAGNAGTCAAAGAATTGATAGATTTCGTGCAAGATAATGATCGTCTGAGGCAAGAAAGAAGAAGAGCGAAACAAAACAGAGAAAAGTACATTGGATTGTCTTCTGATGTTGTCTCAGATGGCTTTTACATTCGACACAAAGTCAAAGAATTGATAGATTTCGTGCAAGATAATGATCGTCTGAGGCAAGAAAGAAGAAGAGCGAAACAAAACAGAGAAAAATACATTGGATTGTCTTCTGATGTTGTCTCCGATGGCTTTTACAGTGACAAATATGACAAAGAACCAAGTGGAAGAACTGGTAAAGATGACTTTGATTCAATGGATCTTCAGAGAAAGAGTAAATTGGGTGAATTCAAGGATAGGATTGGACAGAAATTAGGTGAACTTCGACCTGGAAAGAGAGATTATAAAGATTATCATGAAGAATCGAAAGGTGGCGGCGGTAGAAATGCATACAGGGACGAGCCAGAAGACGGTGAAGAAGTCTCGGAGGAGAAAGACGCAGCCGATGAAGACATTTTCTCATACAAATCATCAGCACTAACTTCTTCTGATGCTAGTTCAGAAAAGGGTGCCTCAGCATCGCCCACACCTCCTCCTACACGAAAACCAATGAAGAAAATCGACTTAGGGGCTGCAGCTACGCTTGTCAGTGTTGCACAAACTGCGAAGCCGCAAGCGACAGAAAACGGATCTACTTCGGAGCAGCTTAACAGTAAAAAGAACACATCTGCTATGAATGATCTAGTCGATTTGATGAACACAGGACCTAAAGATGCTCCATTAGTGCCAGGGAATGTATCATCAGAACCTGATTTATTTGGTAACTTTTCAAGTGCACAGCCTACAGCTCAACAAAGCAATGACGATTTTGCAGATTTTAGTGCATTTAATGCAACCAAACCAACAACGCCAGATGAATTCGGAGATTTCAATGCCTTTGGCAATACATCGACGTCTACTGCACAGGCATCTACATCCTTGCAGgccctTATTCATTACTACATAATTGATGTGTTTTGCATTTTCATCATCGAAATGTTACTTTGTCTTTCAGCTCAACAAAGCAATGATGATTTTGCAGATTTTAGTGCATTTAATGCAACCAAACCAACAACGCCAGATGAATTCGGAGACTTCAATGCCTTTGGCAATACATCGACGTCTACTGCACAGGCATCAACATCCTTGCAGAGCTTTGATCTACTCGGCTCAAGTGCATCAATAATCAGTCAACCACAAGCACCTACGATACAAACAATGAACACACTAGGGAATTTAGCATTCAGTATGACGTCACCTTACCAGCCTGTTGCAGCTGCGCCACAAGGCATGACACAGTCAATGACTACGCCACAAATGAACCAAAGTAATCTAGCTGTCAATCAACCTAAATCATCGGGATCTTCCCCGAAAGAGAAGTCATCGCTGTGGAGTAACACTGGCCTAGATATCAGCTTAGATACACTCAGTCCTGTTGCGTCAAGAGACAAACCGTTGCAACCAAGCATGAACCAATTGACCAATCAGCAAGCGATGCCAGGTCAGATGACTAATATGATGCCacaacaacaacagcaacaacaaGTGAATATGCAAGGTATCCAAGCAACTAATATGGCTTCTATGAACTCTGGTATGAGTAATATGAATCTAGGAACTGGTATGGGCCGCCCTGTACAAATGGGCAATCAACCTATGCAGCAAATGGGTGCACAAATAGGAGCCCAACAGATGGCGGGCCCTCAGCAAatgggcatgagtatgggtgtcggtatgaatatgggaatgATGGGTAATCAAGGTAACCTAGGTAACCAGAACATGGGTATGGCACCCGGCATGCAGTACAATTACCAAAATATGGGTATGCGAATGCCGATGCAAGCACAGATGTATCAGACACCGATGCAAGGAACTATGGGACAGTTTAGGTCTTAAGTTGATTTATATTAGTTAATTTAATAAGATAAAATAGGCCGCGTTGCGTCAACGCTCCGTCATTTCATGCATTCAACGATGTGATTTGTATCTGTCTAAGAAGGGCACTAAGGGCGACTGTGCAATCATGTTATATTGTATACGATTCTCTTCTGTATGTAAATGCGTATTTTTTTAACGTAGACGTTATTGTTATTCGCTTTAAGCCGGTTCTCAACTGGAGGAATTATTTCCTGCGAATCGAAGTGTTTCGAGTGTAAGTATTCTCAGTTGAAATTAGATTCACTCCGGCGGTTCTCTTCTATGAAAAAGTGAGTTCGATCAGTTTCGACCATATTTCTGCGTGCTCAATATTTTTCTTGCTGAAAAATTATTCGCGCGAAAAAACTCACCGATGGGGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01417 all species →	ENTH	ENTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR013809 all species →	Domain	ENTH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12276 all species →	EPSIN/ENT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0030125 all species →	Cellular Component	clathrin vesicle coat	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24721	CLINT1, EPN4; clathrin interactor 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.