Gene detail

Detailed information of scaffold13.g167.t1 in Aurelia aurita

Genomic Location: scaffold13:2389303...2395293
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12241 all species →	TUBULIN POLYGLUTAMYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0018095 all species →	Biological Process	protein polyglutamylation	Interproscan
GO:0070740 all species →	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase	EC:4.2.3.12 EC:4.1.2.50	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of scaffold13.g167.t1 across 22 RNA-seq samples of Aurelia aurita. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

21TPM > 0

19Conditions

19.1Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
complete polyp	3	2	2.46	3.88
polyp not induced	2	2	7.04	7.04
polyp endoderm from body column	1	1	0.49	0.49
jellyfish bell edge	1	1	14.49	14.49
strobila non-segmented part	1	1	11.06	11.06
polyp 12h induction with 5M2MI +20C	1	1	16.73	16.73
polyp 24h induction with 5M2MI	1	1	10.93	10.93
strobila segments	1	1	16.23	16.23
strobila heads	1	1	11.96	11.96
polyp 24h induction with 5M2MI +20C	1	1	7.87	7.87
jellyfish ropalia	1	1	17.75	17.75
polyp head region	1	1	2.79	2.79
polyp 20h induction with 5M2MI +20C	1	1	11.68	11.68
complete strobila	1	1	5.93	5.93
13 jellyfish ropalia	1	1	9.47	9.47
complete juvenile jellyfish	1	1	13.16	13.16
polyp ectoderm from body column	1	1	6.45	6.45
jellyfish bell edge without ropalia	1	1	8.77	8.77
3 juvenile jellyfish (~7mm in diameter)	1	1	19.13	19.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR7992487	complete polyp	complete polyp	polyp	not recorded	SRP164891	3.88
SRR7992484	complete polyp	complete polyp	polyp	not recorded	SRP164891	3.49
SRR7992486	complete polyp	complete polyp	polyp	not recorded	SRP164891	0.00
SRR8090261	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	7.04
SRR8090262	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	7.03
SRR7992468	polyp endoderm from body column	polyp endoderm from body column	polyp	not recorded	SRP164891	0.49
SRR8090258	jellyfish bell edge	jellyfish bell edge	jellyfish	not recorded	SRP164891	14.49
SRR8090265	strobila non-segmented part	strobila non-segmented part	strobila	not recorded	SRP164891	11.06
SRR8090264	polyp 12h induction with 5M2MI +20C	polyp 12h induction with 5M2MI +20C	polyp	not recorded	SRP164891	16.73
SRR8090263	polyp 24h induction with 5M2MI	polyp 24h induction with 5M2MI	polyp	not recorded	SRP164891	10.93
SRR8090260	strobila segments	strobila segments	strobila	not recorded	SRP164891	16.23
SRR8090259	strobila heads	strobila heads	strobila	not recorded	SRP164891	11.96
SRR8090256	polyp 24h induction with 5M2MI +20C	polyp 24h induction with 5M2MI +20C	polyp	not recorded	SRP164891	7.87
SRR8090257	jellyfish ropalia	jellyfish ropalia	jellyfish	not recorded	SRP164891	17.75
SRR7992469	polyp head region	polyp head region	polyp	not recorded	SRP164891	2.79
SRR8090255	polyp 20h induction with 5M2MI +20C	polyp 20h induction with 5M2MI +20C	polyp	not recorded	SRP164891	11.68
SRR7992485	complete strobila	complete strobila	strobila	not recorded	SRP164891	5.93
SRR7992483	13 jellyfish ropalia	13 jellyfish ropalia	juvenile jellyfish	not recorded	SRP164891	9.47
SRR7992482	complete juvenile jellyfish	complete juvenile jellyfish	juvenile jellyfish	not recorded	SRP164891	13.16
SRR7992481	polyp ectoderm from body column	polyp ectoderm from body column	polyp	not recorded	SRP164891	6.45
SRR7992480	jellyfish bell edge without ropalia	jellyfish bell edge without ropalia	juvenile jellyfish	not recorded	SRP164891	8.77
SRR8090266	3 juvenile jellyfish (~7mm in diameter)	3 juvenile jellyfish (~7mm in diameter)	jellyfish	not recorded	SRP164891	19.13

Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.