Gene detail

Detailed information of scaffold131.g36.t1 in Morbakka virulenta

Genomic Location: scaffold131:1683145...1684411
NR annotation: MCS5650070.1, DDE-type integrase/transposase/recombinase [Dehalococcoidia bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P34457	Putative uncharacterized transposon-derived protein F54H12.3 OS=Caenorhabditis elegans OX=6239 GN=F54H12.3 PE=5 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780	Domain	Chromo domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00986	ltrA; RNA-directed DNA polymerase	EC:2.7.7.49	Enzymes with EC numbers	-	deepkoala