Gene detail

Detailed information of scaffold1341.g1.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1341:2798...31094
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1341.g1.t2

ggtacttccacaaaaagtgagtctggtagagtcactttgagtcacttttttgtttttcaagtgtaaaaatgaaatttccacattttgatgccaaaaatgccaaaatcgtgctgcccctgagcatgtccaattaagcgtgaaattagaatccgtatttcttctggctgataatccgttaaaagctgttatattcatgtactaaataaagctgatttcatacaaatcggacatttctgagccaagaaatgagaagttgaattttggcattaattaaccaataagaggaagatttgataaaattgccatgaaattgacacttgtacatttcaccaaactttgagcccgattttctctgggctcgcatgtccgatttcgatgaaattttttttattttgatggctaatatatcttattttgagtggtatgatcagtggtcggaaataagcaacttcattttttgatatttcttccacttgctggatcactgtgacccggcacatccttgtcggacaaatatagagcaacaacaacgcgaatattttcgaaagcaaattacatgaagtagtagcaagcagctgcatgcattgtttgttcgattgaaagaaacatggtggatcatttggcagaaacatttggcggttggcattttaaataatgtcaaaaacgaccagaaaagtcaccgttgattcaaatcgacgattgtctactgaagcaataacttcaactgatcttccttataaatccaagaaaaagagcgtcttcgaaaggcttggaacggccggtgcaagttatgagccagataagtgcaggacttttttgagagaaggtgattgtccatatggtaataaatgcaagttcagtcacgacattggcccggaaatgaagaaatctaagagatctgatagacacttggatagtgatgatgcaaattaccaagaactagagagcccagaaactaagaaagacaagagaaaaattcaagaaggggaaagactcaagatagaatttaagaaagatgccagtttgaagaaaaaacagacaattgcagaaatttacgaagaagaggttcctattcgtaaaagcaagaaagaaaaagaaaggaaggaaaaagctgaattatatatgcaaattgacagagatgaaaatgtcaggaatattcagctgaaaggagaagataaacgtgagcgaaagatcagggaagacgatgactcacaatcagaaacagcaacttctaaaaaacacaagaaaaagaaaagacaaggggaatctgaggaagaattagcatataaagaaaaaccagaaggcaagaaaaagaagaagaaaaaggcaaagtatgaaagttcaagtagtgacagtgaagatgatagagaaaagaagaagaaggctaaaaaagaaaaatataaaactgtcgagactgatgaatcttctaatgaagggaagaaacggaaagtgaagaattacgaggaaaatgaagatacaagaatagtaaccgagagaaaaattcaagaaggggaaagactcaagatagaatttaagaaagatgccagtttgaagaaaaaacaaacaattgctgaaatctatgaagaagaggttcctattcgtaaaagcaagaaagaaaaagaaaggaaggaaaaagctgaattatatatgcaaattgacagagatgaaaatgtcaggaatattcagctgaaaggagaagataaacgtgagcgaaagatcagagaagacgatgactcacaatcagaaacagcaacttctaaaaaacacaagaaaaagaaaagacaaggggaatctgaggaagaattagcttataaagaaaaaccagaaagcaagaaaaagaagaagaaaaaggcaaagtatgaaagttcgagcagtgacagtgaagatgatagagaaaaaaagaagaaggctaaaaaagaaaaatataaaactgtcgagactgatgaatcttctaatgaagggaagaaacggaaagtgaagaattatgaggaaaatgaagatacaagaattgtaaccgaggtgaagaaaaagaagaagaaacgaaaagataaatatgaaagtgaaagtgaagaagaagattcttatgccagaaaagaaaaaccagagagacccgaacgagctgaaaggggatatgatgcagagaaaactcgcaagccacgaaaatctgccgacgatgaagtttatgctcggaagaatgaggacctggaagctgctaggaaaaagagacccagtgaaactaagaaagagaaatattctccaagtcccagggtagaaacaaaggggaaggaacggatgaagagatcgcaaagttggtcatcactgtcatccgggtcgtcccttttggtcgagggagacgatgatgggtacagaaagaaggggaaacgagagaagcgggttgagaaggaatatcgcgatgaacctaaaaaggagaaagaaagaagaagagagaaatatgaagaaccgagaagtatgccgagaaggaatcaagaggaaccaagggaaacgtttctggatgacagaagaaaagaaattcaatcagaaccctaccctagagatccttacccgcaaccaccacaccaagagcctctttatgactcatgggaacgagatcgccaaggagggtacgatgacagacagccatccagccaatacacttctccttattcatcatatggacgaggaagggcccctgatccatatagccgaggaagatatgatccccctggaaaaggaagtgctgatagggatagaccaggttatagacaatatgctgatcaaccctacgggggtgagcaaggaagatatagagaaaggggaccccgagatgcgagagacccccgagagccgcgggagccacgagagccgcgagattctcgagagccatacccatacccgcattccgctggtcgccgaggaggctatcctggagaggatgaaggctatcaagctgggcggccaagagacccttatcaaggcccacaagaacctgtacagagttattcaagggatgataagccaatacatagacatcgtggtgaatatccccctgttaaagctgagtcagaaaatctcgatgatagaggaaggaagagaacgtcttatccatcatctcgagagcataaagcaggggccctagaaaaatgtgctggcgccctagacgaaaacgactgcaagtggagggatgacagaagaaaagaaattcaatcagaaccctaccctagagaaccctacccgcaaccaccacaccaagagcctctttatgactcatgggagcgagatcgccaaggagggtacgatgacagacagccatccagccaatacacttctccgtattcatcatatggacgaggaagggcccctgatccatatagccgaggaagatatgatccccctggaaaaggaagtgctgatagggatagaccaggttatagacaatatgctgatcaaccctacgggggtgagcaaggaagatatagagaaaggggaccccgagatgcgagagacccccgagagccacgagagccgcgagattctcgagagccatacccatacccgcattccgctggtcgccgaggaggctatcctggagaggatgaaggctatcaagctgggcggccaagagacccttatcaaggcccacaagaacctgtacagagttattcaagggatgataagccaatgcatagacatcgtggtgaatatccccctgttaaagctgattcagaagatctcgatgatagaggaaggaagagaacgtcttatccatcatctcgagagcataaagctcanaagaacctgtacagagttattcaagggatgataagccaatgcatagacatcgtggtgaatatccccctgttaaagctgattcagaagatctcgatgatagaggaaggaagagaacgtcttatccatcatctcgagagcataaagatcatcattcaaaaagcccccgaccaagaaaaagatctcacagcccaagagaaggtgaaagggatgaaagtaaagatcgatcgaagtccaggacgtagcacaccacaagatggcgaaaatgtcgacgatgtttatgaaaagatcagtgatgaagatcttgatttctttgatgaagaaaattcaaaatccaacaaaccagccttacttgaagatatcgactggagtgctttggccgctattgcccctgtatcgaagaaaggcaatgctgaaggtacacaatcacaccgaagcaaacattcagccgtcaacatccttaaaaccatcggtttctctgcgaatctattgagtaacaaaacacttgagaaaatcaaagaaaaatacattgaatcgaccaaacaagattcttccaaggacaatgaaatcgaattcagcgaattaacgactggaacaggcacacttattgcgagcagaatgcgaaacagacgttatcgtaaaaatttaattcgtaatttggcgattgatggaactgtgctgagtatgaggaaagatatcaacttgagaaaggaactgagaattccaccgaacaggggatatcaaaacgtttgtgcacatcaggttgtagcattttagatatgagatcctttacctccggtgatatgttctttcggcgtgagaaatgcactggacgcataacttgttccaggagggtcttcaaatgtgagtcgtcaaaaggcaggctagcactgaccatggtaaacaggacaactccaaggctccagacatctgctaacattgcgtcgtaagcaataccgcggaggatttcaggtggagcgtatgcatatgagccgcagaatgtttgactcaatacgcgcttttttgtctcaggaacgatcatcgaagcgcgggcgaatccaaaatcagataccacgatgttgaagttgtgatccaacagcaaattttcgcattttaagtcgcggtggactataccaagcgaatgaaagtattctgttgcagcgatgagctgtttaaagaatgcccgcgcgccatcgtcggacatcgcaccatttgtgcgtatgtattctaacaaatcgccattttctgccagattcatgattagatatatacgtgtatttgtctcaattgcttccaataatgtaatgcagttggcatgtcgtaatcgtttcagaacttgtatctcacgtggcaaaaactttgtcaggtagtcatcaggggccttcttttttgagataatctttattgcaatcttgcgcttgtgtttctttgattgtgcacatttaaccactgcgtatgaacctttccctaaactgtgtcctaaggtgtatccatattgtgccaataaggcggctgatgagtcaaatggtccagaaattgcgccgggcgggagtccttcttttgatgatgtaggccttgatgtcggtttctcggtcttgtcggccggttggtttatctgttcgacctgatcagtgtttccgcttcctcctttgcttgccattagcgttcggatgaatttacgtaaagagaacgtcgtcgcaaacaaactaaacatcgatgagagcaaaatttattatacaacccatcttattccgacatttgcaagcggccaaaccgtttttatatcaacactgtctcattagcctctcaaaatctccttgattcatctgacgtaattttggcaaggtccataaaacgtcactagattt

Transcript

scaffold1341.g1.t2

ggtacttccacaaaaagtgagtctggtagagtcactttgagtcacttttttgtttttcaagtgtaaaaatgaaatttccacattttgatgccaaaaatgccaaaatcgtgctgcccctgagcatgtccaattaagcgtgaaattagaatccgtatttcttctggctgataatccgttaaaagctgttatattcatgtactaaataaagctgatttcatacaaatcggacatttctgagccaagaaatgagaagttgaattttggcattaattaaccaataagaggaagatttgataaaattgccatgaaattgacacttgtacatttcaccaaactttgagcccgattttctctgggctcgcatgtccgatttcgatgaaattttttttattttgatggctaatatatcttattttgagtggtatgatcagtggtcggaaataagcaacttcattttttgatatttcttccacttgctggatCACTGTGACCCGGCACATCCTTGTCGGACAAATATAGAGCAACAACAACGCGAATATTTTCGAAAGCAAATTACATGAAGTAGTAGCAAGCAGCTGCATGCATTGTTTGTTCGATTGAAAGAAACATGGTGGATCATTTGGCAGAAACATTTGGCGGTTGGCATTTTAAATAATGTCAAAAACGACCAGAAAAGTCACCGTTGATTCAAATCGACGATTGTCTACTGAAGCAATAACTTCAACTGATCTTCCTTATAAATCCAAGAAAAAGAGCGTCTTCGAAAGGCTTGGAACGGCCGGTGCAAGTTATGAGCCAGATAAGTGCAGGACTTTTTTGAGAGAAGGTGATTGTCCATATGGTAATAAATGCAAGTTCAGTCACGACATTGGCCCGGAAATGAAGAAATCTAAGAGATCTGATAGACACTTGGATAGTGATGATGCAAATTACCAAGAACTAGAGAGCCCAGAAACTAAGAAAGACAAGAGAAAAATTCAAGAAGGGGAAAGACTCAAGATAGAATTTAAGAAAGATGCCAGTTTGAAGAAAAAACAGACAATTGCAGAAATTTACGAAGAAGAGGTTCCTATTCGTAaaagcaagaaagaaaaagaaaggaaggaaaaagCTGAATTATATATGCAAATTGACAGAGATGAAAATGTCAGGAATATTCAGCTGAAAGGAGAAGATAAACGTGAGCGAAAGATCAGGGAAGACGATGACTCACAATCAGAAACAGCAACTTCTAAAAAACACAAGAAAAAGAAAAGACAAGGGGAATCTGAGGAAGAATTAGCATATAAAGAAAAACCAGAAGGCAAGAAAAAGAAGAAGAAAAAGGCAAAGTATGAAAGTTCAAGTAGTGACAGTGAAGATGATAGAGAAAAGAAGAAGAAGGCTAAAAAAGAAAAATATAAAACTGTCGAGACTGATGAATCTTCTAATGAAGGGAAGAAACGGAAAGTGAAGAATTACGAGGAAAATGAAGATACAAGAATAGTAACCGAGAGAAAAATTCAAGAAGGGGAAAGACTCAAGATAGAATTTAAGAAAGATGCCAGTTTGAAGAAAAAACAAACAATTGCTGAAATCTATGAAGAAGAGGTTCCTATTCGTAaaagcaagaaagaaaaagaaaggaaggaaaaagCTGAATTATATATGCAAATTGACAGAGATGAAAATGTCAGGAATATTCAGCTGAAAGGAGAAGATAAACGTGAGCGAAAGATCAGAGAAGACGATGACTCACAATCAGAAACAGCAACTTCTAAAAAACACAAGAAAAAGAAAAGACAAGGGGAATCTGAGGAAGAATTAGCTTATAAAGAAAAACCAGAAAGCAAGAAAAAGAAGAAGAAAAAGGCAAAGTATGAAAGTTCGAGCAGTGACAGTGAAGATGATAGAGAAAAAAAGAAGAAGGCTAAAAAAGAAAAATATAAAACTGTCGAGACTGATGAATCTTCTAATGAAGGGAAGAAACGGAAAGTGAAGAATTATGAGGAAAATGAAGATACAAGAATTGTAACCGAGGTGaagaaaaagaagaagaaacgaaaagataaatatgaaagtgaaagtgaagaagaagatTCTTATGCCAGAAAAGAAAAACCAGAGAGACCCGAACGAGCTGAAAGGGGATATGATGCAGAGAAAACTCGCAAGCCACGAAAATCTGCCGACGATGAAGTTTATGCTCGGAAGAATGAGGACCTGGAAGCTGCTAGGAAAAAGAGACCCAGTGAAACTAAGAAAGAGAAATATTCTCCAAGTCCCAGGGTAGAAACAAAGGGGAAGGAACGGATGAAGAGATCGCAAAGTTGGTCATCACTGTCATCCGGGTCGTCCCTTTTGGTCGAGGGAGACGATGATGGGTACAGAAAGAAGGGGAAACGAGAGAAGCGGGTTGAGAAGGAATATCGCGATGAACCTAAaaaggagaaagaaagaagaagagagaaatatgaagaaCCGAGAAGTATGCCGAGAAGGAATCAAGAGGAACCAAGGGAAACGTTTCTGGATGACAGAAGAAAAGAAATTCAATCAGAACCCTACCCTAGAGATCCTTACCCGCAACCACCACACCAAGAGCCTCTTTATGACTCATGGGAACGAGATCGCCAAGGAGGGTACGATGACAGACAGCCATCCAGCCAATACACTTCTCCTTATTCATCATATGGACGAGGAAGGGCCCCTGATCCATATAGCCGAGGAAGATATGATCCCCCTGGAAAAGGAAGTGCTGATAGGGATAGACCAGGTTATAGACAATATGCTGATCAACCCTACGGGGGTGAGCAAGGAAGATATAGAGAAAGGGGACCCCGAGATGCGAGAGACCCCCGAGAGCCGCGGGAGCCACGAGAGCCGCGAGATTCTCGAGAGCCATACCCATACCCGCATTCCGCTGGTCGCCGAGGAGGCTATCCTGGAGAGGATGAAGGCTATCAAGCTGGGCGGCCAAGAGACCCTTATCAAGGCCCACAAGAACCTGTACAGAGTTATTCAAGGGATGATAAGCCAATACATAGACATCGTGGTGAATATCCCCCTGTTAAAGCTGAGTCAGAAAATCTCGATGATAGAGGAAGGAAGAGAACGTCTTATCCATCATCTCGAGAGCATAAAGCAGGGGCCCTAGAAAAATGTGCTGGCGCCCTAGACGAAAACGACTGCAAGTGGAGGGATGACAGAAGAAAAGAAATTCAATCAGAACCCTACCCTAGAGAACCCTACCCGCAACCACCACACCAAGAGCCTCTTTATGACTCATGGGAGCGAGATCGCCAAGGAGGGTACGATGACAGACAGCCATCCAGCCAATACACTTCTCCGTATTCATCATATGGACGAGGAAGGGCCCCTGATCCATATAGCCGAGGAAGATATGATCCCCCTGGAAAAGGAAGTGCTGATAGGGATAGACCAGGTTATAGACAATATGCTGATCAACCCTACGGGGGTGAGCAAGGAAGATATAGAGAAAGGGGACCCCGAGATGCGAGAGACCCCCGAGAGCCACGAGAGCCGCGAGATTCTCGAGAGCCATACCCATACCCGCATTCCGCTGGTCGCCGAGGAGGCTATCCTGGAGAGGATGAAGGCTATCAAGCTGGGCGGCCAAGAGACCCTTATCAAGGCCCACAAGAACCTGTACAGAGTTATTCAAGGGATGATAAGCCAATGCATAGACATCGTGGTGAATATCCCCCTGTTAAAGCTGATTCAGAAGATCTCGATGATAGAGGAAGGAAGAGAACGTCTTATCCATCATCTCGAGAGCATAAAGctcanaagAACCTGTACAGAGTTATTCAAGGGATGATAAGCCAATGCATAGACATCGTGGTGAATATCCCCCTGTTAAAGCTGATTCAGAAGATCTCGATGATAGAGGAAGGAAGAGAACGTCTTATCCATCATCTCGAGAGCATAAAGATCATCATTCAAAAAGCCCCCGACCAAGAAAAAGATCTCACAGCCCAAGAGAAGGTGAAAGGGATGAAAGTAAAGATCGATCGAAGTCCAGGACGTAGCACACCACAAGATGGCGAAAATGTCGACGATGTTTATGAAAAGATCAGTGATGAAGATCTTGATTTCTTTGATGAAGAAAATTCAAAATCCAACAAACCAGCCTTACTTGAAGATATCGACTGGAGTGCTTTGGCCGCTATTGCCCCTGTATCGAAGAAAGGCAATGCTGAAGGTACACAATCACACCGAAGCAAACATTCAGCCGTCAACATCCTTAAAACCATCGGTTTCTCTGCGAATCTATTGAGTAACAAAACACTTGAGAAAATCAAAGAAAAATACATTGAATCGACCAAACAAGATTCTTCCAAGGACAATGAAATCGAATTCAGCGAATTAACGACTGGAACAGGCACACTTATTGCGAGCAGAATGCGAAACAGACGTTATCGTAAAAATTTAATTCGTAATTTGGCGATTGATGGAACTGTGCTGAGTATGAGGAAAGATATCAACTTGAGAAAGGAACTGAGAATTCCACCGAACAGGGGATATCAAAACGTTTGTGCACATCAGGTTGTAGCATTTTAGATATGAGATCCTTTACCTCCGGTGATATGTTCTTTCGGCGTGAGAAATGCACTGGACGCATAACTTGTTCCAGGAGGGTCTTCAAATGTGAGTCGTCAAAAGGCAGGCTAGCACTGACCATGGTAAACAGGACAACTCCAAGGCTCCAGACATCTGCTAACATTGCGTCGTAAGCAATACCGCGGAGGATTTCAGGTGGAGCGTATGCATATGAGCCGCAGAATGTTTGACTCAATACGCGCTTTTTTGTCTCAGGAACGATCATCGAAGCGCGGGCGAATCCAAAATCAGATACCACGATGTTGAAGTTGTGATCCAACAGCAAATTTTCGCATTTTAAGTCGCGGTGGACTATACCAAGCGAATGAAAGTATTCTGTTGCAGCGATGAGCTGTTTAAAGAATGCCCGCGCGCCATCGTCGGACATCGCACCATTTGTGCGTATGTATTCTAACAAATCGCCATTTTCTGCCAGATTCATGATTAGATATATACGTGTATTTGTCTCAATTGCTTCCAATAATGTAATGCAGTTGGCATGTCGTAATCGTTTCAGAACTTGTATCTCACGTGGCAAAAACTTTGTCAGGTAGTCATCAGGGGCCTTCTTTTTTGAGATAATCTTTATTGCAATCTTGCGCTTGTGTTTCTTTGATTGTGCACATTTAACCACTGCGTATGAACCTTTCCCTAAACTGTGTCCTAAGGTGTATCCATATTGTGCCAATAAGGCGGCTGATGAGTCAAATGGTCCAGAAATTGCGCCGGGCGGGAGTCCTTCTTTTGATGATGTAGGCCTTGATGTCGGTTTCTCGGTCTTGTCGGCCGGTTGGTTTATCTGTTCGACCTGATCAGTGTTTCCGCTTCCTCCTTTGCTTGCCATTAGCGTTCGGATGAATTTACGTAAAGAGAACGTCGTCGCAAACAAACTAAACATCGATGAGAGCAAAATTTATTATACAACCCATCTTATTCCGACATTTGCAAGCGGCCAAACCGTTTTTATATCAACACTGTCTCATTAGCCTCTCAAAATCTCCTTGATTCATCTGACGTAATTTTGGCAAGGTCCATAAAACGTCACTAGATTT

Protein

Gene family

Family type	Membership / link
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR052131 all species →	Family	ATRX domain-containing protein	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46357 all species →	TRANSCRIPTIONAL REGULATOR ATRX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005721 all species →	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:1901582 all species →	Biological Process	obsolete positive regulation of telomeric RNA transcription from RNA pol II promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22909	ZC3H13; zinc finger CCCH domain-containing protein 13	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.