Gene detail

Detailed information of scaffold135.g32.t2 in Morbakka virulenta

Genomic Location: scaffold135:1488119...1539767
NR annotation: XP_019862187.1, PREDICTED: AP-5 complex subunit mu-1-like [Amphimedon queenslandica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold135.g32.t2

ACGTACTGACCCCCGTTTACCACATGGCATATCTGAGCGCCCACACATTCACCTATCTCAAAATCATAGCCACAATTTCTTCAGCCTCTGTTGGTACTGACCTCCACCACAGCCTGGTCTACAAATATTGTTGGCAGATGTAGAAAGGTAGTTTTTAATACACTTTTCTAGATGCCCGCATGGAGACCCTTCGCACCCAAAGGTAAACAGACGATACAATTTAGTTTACAAGAGAATATTCGAGCCGTCCAACATGGAAAAGGACATATAGATGATGTTTGCGAGATATATGGAACCATAAATTGTAGGGTAGACCTAGAAGGAGCTCCAGAAATATCATTAAATCTTATAGCACCACTTCAGTCAGCTGCCATTGATCAAGTGGTATATCACCCATGTGTTCTTTTGTCCGATGACCCAACATCAACAGTTACCGGAATCGACAAGGATGTTGACACACCATTTGCTATAAAGCCAGTGCGCTTTTGCCCACCCCTTGAAGCGTTTTCACTCTGTCACTACAAAGCAAAACTCGGAGGCAACCCATTGCCACTTCATGCATACTACCAAATGAAGATGGAAGAAACGGTAGCAAAGATCTTAGTACAGGTGAAATTAGCTGACACGATGCAGAACAGCTTTGAATTTTGCAACGTTCATATTCCTTTCTTCAACAAAGGAACGGTAAAGAACTTTAACTGCATTCCACTTTCGTCGAATGTTAGCGTGAGTCAGGATCGAACTTCTGTCGTCTGGACGATAGGACAGAAGTTTCCCAAATCACTGGAAGTTTCATTGGAAGGCACTATTGAATTTAACAAGTGCCCACCAAGTGGTGGTATTTTGAAGGATCCCTTTTGCTTTGGGATGAACTCCTTTTTACAGATAAGCTTCAAGGTTGCTGATTTCACCGTCAGTGGACTTAGGATTGATTCGCGATCTTTGATGCTTCTTCCTAGAGCAAAAGTAAAAACAAGTACAATTTCCGAGCTTGTATCAACCGATTACAGAGTTTGGAATTCCCATGGGGATACCATATATGCCCCGAAACCCAACTTGCTTTGACGAATACGAAACTATCGATGGAGGACTGGAAACATATTTTAAAGATAACGATATACTACGTCTAAGTGATTCTATGTGGTATCTAGAAAAAACTACCACCAAGAACTTATGATTTGGAGGTTTTTCTTCAAATGTCTTCTTTTGGGAAGAAAATTTCCTGAAATAGTACCTCATCGTCTCCTTGTCGTGTAGTATTACTTACGACAGAAATCTTGAATGTTGTTCTTTTGACATTTGAAACTGTTACATATTTCTGTGTATCTGTTGCAAATGCGCAGTTATATACTGACCTCGTTTCAACCAGATAAGATAAAACAGTTACATATGAAATAGTTTTTTATTCAAAATTAAATGAATATGAATAAGTAAATAGAAATAAGTAAGGATACAGGGACATTGCTAGGGTTGTTTTCTTACGAGAGCCGAAGGATTTTTGCATTGCCGGGATTTTGCGGGTTAAATTATCTCCATAACGTACACCACTCCAATTGCTAGTAACAGACGGACATGATGTTCACATAAGAGTAGTAGGCAGATGATTGATACCTTAACTGTTATGCTAAATTAGTAATATAATAGTAATATTGTGATGAAGAAGTCAACATTGATGTTTTTATCCAAAGGAGCGCTGCAGCTCAAGTATTACTACGAAAAGTCTCATAATATGACTACGTTGGAACTGTCATATTATTCGCGTCATGTTGTGTGAGGTTAAAAAGCGTCGACAAGCGTTGCCCCTTTTATTAAACACTGGATCTTTTCACAGCCGCTTCATAAGTAAATTGGTTCACCTCTCGGTTATTTACCATATGATGTGAGCTAATCCGCGTGAAGAACTTTCCTTACCCGTAAATCAAGCTTTGCCTTTGGTTTACGCGTGTGGTTCAAAAAATAAATGTGAACATGATACAATACTGGAGCAAATAAATCACGTGAAAACGAAATTTGCGCTGGCGACAAAAAGCGACACCAGGAGAATGATTTGCACATTCAATTCGTTAGCACGTCATCGCAAGTTTGAAAAGAAAATGCCTGTTAAATAATGACTTTCAAATGAGAACCAAGGTTTGAAACTGCAAGTAGTTAGATAGACTTGATAGCTTTATTTTATACACTTTAATTCACAATTTTCACGTACTCGCGACGTTGTAAGGGAGCTCTAACCAACTGTTTGATAAAGGAGATAAAGTATCAACAGTTAAACGACATTACTTATTTACTAGTAAAGTTCCTTTAACTGTACCTGATTATCGACATCGAGACAACACCCTTCTCTGTGTAAGTTAACAAGAAGACCCAAAAAAATCGAAGATATTAAGGTTTCACTTATCTCGCAATTATGGTACTCATAGCCATCAGCTACTTAATTGTTGTGTATAAAGCTCATTAATTGCTATGAGCATTACAATATTAAAAAACCTACCCAAATCGTATTTTATCAAAATCCTCCTTCATTAGCTTCTACTAATTAAACTATTATTTTGGTGTTGTAAACATTTTTTAGGATAAGCTGCAAAATTTTTTGGGACGTGTTAGAGGGTTGATTCTATCGACTTTACCAGTTTTTTAAAATACATTGGACCCAGTAAAGTTTTTTTGAAGACTAGGAGAATCGCTTGTCGCTGGAGTAGGGAAACCTTATAGGGAGCAATTCACTGCGAGATAATTTTCTGTGGGATAGTATTCCAGATAAATTACTATCGGAGCAGCTCACTTGAGCATTATTTACTGCAGGAAATTTTCCTGCCACCAACTGCACTATAGCATGCTTCTTGTAATTTTGTATTTGGTATCCATACAAACGCATTACCAAAATCCACAATATGCATGGGCGTTCAAACTTTTTTGTGGTATCTGTAAAAATTTGCAATCGAGTTGGCTGGTCATTTCTCATATAGAGGTTTTTAAGCTCTTTGTTAAATATTCCGGAAGttcttgtagctcctccattgtgcttcctatcaaaactacatcatcagcatatctgaggttggagatagtcctgccccctactttcacactgccttcatatccttctagtgcttctctcataatgcactctgaatatatgttgaataggtgtggggagattacgcatccttgtcgtacccccttttcgattgggaaccattcagaatctccataggtcgtgcgcacctttgctttctggttttcgtacaatcccatcagcagttggatgatatgtacagggataccgatttgtttcatgtctgtccatagcctgtcatgcgaaaccatatcaaaagctttagagtaatcaatgaagcataggaagatgtccctatttctttctctattcttttctataaccatcttcaggttaaggatttgatttctcgttcctctgcctggtcggtaagccgcttgttcctctgccacttcatgatccagtgtcaactttagtctttttgcaactactttcaagatggttttgctactgtgactgatcaatgcaattgttctgttattgcaacattgtaatgtatctcctttctttggtatgggtataaaaaccgaattcaacc

Protein

Uniprot

Uniprot term	Description
Q5E9X5	AP-5 complex subunit mu-1 OS=Bos taurus OX=9913 GN=AP5M1 PE=2 SV=1
Q499N2	AP-5 complex subunit mu-1 OS=Rattus norvegicus OX=10116 GN=Ap5m1 PE=2 SV=1
Q4R6Q7	AP-5 complex subunit mu-1 OS=Macaca fascicularis OX=9541 GN=AP5M1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028565	Domain	Mu homology domain	Interproscan
IPR039591	Family	AP-5 complex subunit mu-1	Interproscan
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16082	AP-5 COMPLEX SUBUNIT MU-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0030119	Cellular Component	AP-type membrane coat adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19023	AP5M1, MUDENG; AP-5 complex subunit mu-1	-	DNA repair and recombination proteins	ko03400	deepkoala