Gene detail

Detailed information of scaffold135.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold135:71001...86144
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold135.g4.t1

ttctccagggctcaatttaccagttacaagaggctacgttgaattgcggaggagctaaatatagagaaacgagggcaacgaatttgcaagatggcggctgcgaaaatgcgaagtggtgaagaggaagaaatagaaatggaagagacatggggatctcttgtctccttaatcagatccaaagatggtaggttggaagaaggaaatacaattaaaatggttaagaaagaagttacgatcggaagatgtaaagaatgtgatattgcacacacagacaataaactactgtcaagctaccattgtaaatttattcatgataaatcacaaaaaaagatattcctctgtgataccagcaaaaatggaacattggtggacaatgcaaaagtgaaaaacaaaacagttgaggtgtcagactcttcagtaatacaatgtgttcacaagaaatctgaaccacacttggatgttacttaccgactgaaaatcaacaaagtctcatcttcaaaaaatgctgattgcaaacttgatgcaactttagatgctgatgctacgcaagaccacgatgctgatactgaggaagaaaatgatacagaagaagttgaagaaacaagaagaaaaaggcctgcaacatcgccatctcctgaagaaacagcaagtaagattccaaaaaatgaaagaagggacagtgagtgcaaaccaaagccatctcaggaaccagcaaagaaaattgatgacagtgaccgtgaaatggaagaaaatttgacatgtggtatttgtcaggatatcttccacgactgcatcagtgctcagccatgcatgcattcattttgtgcttcatgctattctatatggatggttcaatcccgaaaatgcccatcgtgtcgcaaaacagttaaacaagttggtaaaaatcacatcgtcaataacctggttgcagcatttatcaaaaagcatccagatcggcagagatcggaagatgaactgaaggaaatggacagaaataataaaatcaagggtgatacggtaaaagttgaatcgaatggagacgaggttgatcaaagcggctacgagactgatgatccttccacagaatatgaaactgatggaagtgattcggactcggattatattcatgatgatattgatgctctgggtcgtgactgcccatttccaatcatcttaccgcccgtacccctctatagagcaccaagtgtatttttacgcccagctggatcccaatgtctacaatgcacaggatttgcagtgcaaaatgcctcttgtcaaggaatcatagataattcgatcgcctcattcagatgcgctcctggtcaggaccacatactctgcagttgctgcaatcagttttttccagatcgtcgaggcgaggctgcatcaagccgtaattgggatattcaatgttcttcgtgtagaaagctctcctgccatctttactggggatgtcggaaaccaggatgcttgggatgtctcaataaattcgaagatttcaattttggaaatgcatcactaacaagaatcatcaataataatcagtttgaatctattgttttaaaggattatcttgcacagaaaaatattgatgtgaaagaattgctgcggatttgtgtggagaaattgaaagccagcgaatacacagttgtacagtgccaaccaggcctatcatcaacagatatactttgcttcagttgtggtttgcgatgtttcaaagaactcgtgtatcaatatcgaaaagatataccaaacgaggatctaccgactgacgtagcaaatcgaagtgattgttattgggggaaaaattgtcggacgcagcatcataatcctatgcacgcaagtcgctacaatcatgtttgtgaacagaccagatatgtatgaagtgaaccattcctagcatagatatggacgccaaacagttatgttttgatagggtactgtaattatattttcctcgagaaatttgtcgcgcattaaaatcttaagatttctagaatgagttattctcaggttttgtagacttgctccaagtctatttcgccaactgttgtaagtctatctgaaagtagaatacaattttttgacgaatagacttggggcaaatctacaggtcttgggacgttgaataattgaccaaattgtttaagtgaagatttgattctctgcaatcacttttttgagcattttttcaagatttgctgaaaagttcaatgtttttagaggaactgcaatatcttcaaaatatcacgaaagtgaaatatttcttagtaaactatttgacaaacttacgttccgaaaggtgtatctagcatacaaaattgaaacattattacctttattctggtgtccccaaaaaaacgtatacagatttggtcggccctgtcaatgaacatttaaacctttaatcaatggctgatcacttttatagggcttttatataatttctcgaaagttagtttaaacatagataccttgtgtaatgatgttggtgcggtgccttgagagctgaaacaataatcttgaaagttcaaatttgcctccacgtccaaaccagagctttggccttggcaagatttctgaagcacatagaagttcaaaactaagatcaatgcaaactgaaaaacggcacaatgggtgacttctatcaaacagaattcgatatcatttgaaactgattagccattgattaaagctaaattcactttgctggacgaaaccctatctgtatactttgttcagggacacgctgtacgcaatcaatacttccaattttaatgtttattcattttcttacgactttgtatatagatatatatttcaagtgaagttgctgttcagttgttcttttgttagctaacaaataattgtataaatattttactatgtaattgtcgtcagcaaaatttagtttgcttttgaaattctcaaaagctattcaaaacagtgaaagcaagaaattaattgcagaaatgctcatttctgggaggaatagatcatttcagcaatctggattaaaaggatcgtttgaagattgacgtaccagtgtggacagagagcttgccttagacccgttcacacggtaccgttttcatttcatattggattggtgcgttctcgtgtaaatagaaggccaatccaatgtgaaaacaaaacggtctggtgtaaacagaaggccattccgatataaaaccaatccggtataaagcgaaaacggtatcttgtaaacgggccttggtattgtaaagttagcttgcttatctattttgagcataactattaaaatgataaaactgtatagaataa

Transcript

scaffold135.g4.t1

TTCTCCAGGGCTCAATTTACCAGTTACAAGAGGCTACGTTGAATTGCGGAGGAGCTAAATATAGAGAAACGAGGGCAACGAATTTGCAAGATGGCGGCTGCGAAAATGCGAAGTGGTGAAGAGGAAGAAATAGAAATGGAAGAGACATGGGGATCTCTTGTCTCCTTAATCAGATCCAAAGATGGTAGGTTGGAAGAAGGAAATACAATTAAAATGGTTAAGAAAGAAGTTACGATCGGAAGATGTAAAGAATGTGATATTGCACACACAGACAATAAACTACTGTCAAGCTACCATTGTAAATTTATTCATGATAAATCACAAAAAAAGATATTCCTCTGTGATACCAGCAAAAATGGAACATTGGTGGACAATGCAAAAGTGAAAAACAAAACAGTTGAGGTGTCAGACTCTTCAGTAATACAATGTGTTCACAAGAAATCTGAACCACACTTGGATGTTACTTACCGACTGAAAATCAACAAAGTCTCATCTTCAAAAAATGCTGATTGCAAACTTGATGCAACTTTAGATGCTGATGCTACGCAAGACCACGATGCTGATACTgaggaagaaaatgatacagaagaagttgaagaaacaagaagaaaaagGCCTGCAACATCGCCATCTCCTGAAGAAACAGCAAGTAAGATTCCAAAAAATGAAAGAAGGGACAGTGAGTGCAAACCAAAGCCATCTCAGGAACCAGCAAAGAAAATTGATGACAGTGACCGTGAAATGGAAGAAAATTTGACATGTGGTATTTGTCAGGATATCTTCCACGACTGCATCAGTGCTCAGCCATGCATGCATTCATTTTGTGCTTCATGCTATTCTATATGGATGGTTCAATCCCGAAAATGCCCATCGTGTCGCAAAACAGTTAAACAAGTTGGTAAAAATCACATCGTCAATAACCTGGTTGCAGCATTTATCAAAAAGCATCCAGATCGGCAGAGATCGGAAGATGAACTGAAGGAAATGGACAGAAATAATAAAATCAAGGGTGATACGGTAAAAGTTGAATCGAATGGAGACGAGGTTGATCAAAGCGGCTACGAGACTGATGATCCTTCCACAGAATATGAAACTGATGGAAGTGATTCGGACTCGGATTATATTCATGATGATATTGATGCTCTGGGTCGTGACTGCCCATTTCCAATCATCTTACCGCCCGTACCCCTCTATAGAGCACCAAGTGTATTTTTACGCCCAGCTGGATCCCAATGTCTACAATGCACAGGATTTGCAGTGCAAAATGCCTCTTGTCAAGGAATCATAGATAATTCGATCGCCTCATTCAGATGCGCTCCTGGTCAGGACCACATACTCTGCAGTTGCTGCAATCAGTTTTTTCCAGATCGTCGAGGCGAGGCTGCATCAAGCCGTAATTGGGATATTCAATGTTCTTCGTGTAGAAAGCTCTCCTGCCATCTTTACTGGGGATGTCGGAAACCAGGATGCTTGGGATGTCTCAATAAATTCGAAGATTTCAATTTTGGAAATGCATCACTAACAAGAATCATCAATAATAATCAGTTTGAATCTATTGTTTTAAAGGATTATCTTGCACAGAAAAATATTGATGTGAAAGAATTGCTGCGGATTTGTGTGGAGAAATTGAAAGCCAGCGAATACACAGTTGTACAGTGCCAACCAGGCCTATCATCAACAGATATACTTTGCTTCAGTTGTGGTTTGCGATGTTTCAAAGAACTCGTGTATCAATATCGAAAAGATATACCAAACGAGGATCTACCGACTGACGTAGCAAATCGAAGTGATTGTTATTGGGGGAAAAATTGTCGGACGCAGCATCATAATCCTATGCACGCAAGTCGCTACAATCATGTTTGTGAACAGACCAGATATGTATGAAGTGAACCATTCCTAGCATAGATATGGACGCCAAACAGTTATGTTTTGATAGGGTACTGTAATTATATTTTCCTCGAGAAATTTGTCGCGCATTAAAATCTTAAGATTTCTAGAATGAGTTATTCTCAGGTTTTGTAGACTTGCTCCAAGTCTATTTCGCCAACTGTTGTAAGTCTATCTGAAAGTAGAATACAATTTTTTGACGAATAGACTTGGGGCAAATCTACAGGTCTTGGGACGTTGAATAATTGACCAAATTGTTTAAGTGAAGATTTGATTCTCTGCAATCACTTTTTTGAGCATTTTTTCAAGATTTGCTGAAAAGTTCAATGTTTTTAGAGGAACTGCAATATCTTCAAAATATCACGAAAGTGAAATATTTCTTAGTAAACTATTTGACAAACTTACGTTCCGAAAGGTGTATCTAGCATACAAAATTGAAACATTATTACCTTTATTCTggtgtccccaaaaaaacgtatacagatttggtcggccctgtcaatgaacatttaaacctttaatcaatggctgatcacttttatagggcttttatataatttctcgaaagttagtttaaacatagataccttgtgtaatgatgttggtgcggtgccttgagagctgaaacaataatcttgaaagttcaaatttgcctccacgtccaaaccagagctttggccttggcaagatttctgaagcacatagaagttcaaaactaagatcaatgcaaactgaaaaacggcacaatgggtgacttctatcaaacagaatTCGatatcatttgaaactgattagccattgattaaagctaaattcactttgctggacgaaaccctatctgtatactttgttcagggacacgctgtacgcaatcaatacTTCCAATTTTAATGTTTATTCATTTTCTTACGACTTTGTATATAGATATATATTTCAAGTGAAGTTGCTGTTCAGTTGTTCTTTTGTTAGCTAACAAATAATTGTATAAATATTTTACTATGTAATTGTCGTCAGCAAAATTTAGTTTGCTTTTGAAATTCTCAAAAGCTATTCAAAACAGTGAAAGCAAGAAATTAATTGCAGAAATGCTCATTTCTGGGAGGAATAGATCATTTCAGCAATCTGGATTAAAAGGATCGTTTGAAGATTGACGTACCAGTGTGGACAGAGAGCTTGCCTTAGACCCGTTCACACGGTACCGTTTTCATTTCATATTGGATTGGTGCGTTCTCGTGTAAATAGAAGGCCAATCCAATGTGAAAACAAAACGGTCTGGTGTAAACAGAAGGCCATTCCGATATAAAACCAATCCGGTATAAAGCGAAAACGGTATCTTGTAAACGGGCCTTGGTATTGTAAAGTTAGCTTGCTTATCTATTTTGAGCATAACTATTAAAATGATAAAACTGTATAGAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF17979 all species →	zf-CRD	Cysteine rich domain with multizinc binding regions	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR040909 all species →	Domain	E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR052256 all species →	Family	E3 ubiquitin-protein ligase CHFR	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16079 all species →	UBIQUITIN LIGASE PROTEIN CHFR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007093 all species →	Biological Process	mitotic cell cycle checkpoint signaling	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10644	CHFR; E3 ubiquitin-protein ligase CHFR	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.