Gene detail

Detailed information of scaffold1360.g4.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1360:22198...34194
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1360.g4.t2

tcctagataccaaaaatgattgacaggaccttgaaaagctgcaaatgttgcaatgcaaagtgttctacggaaattgtgacttccaccttttccttgtgcctttctttccacgacctgtgtaactgcatctccaaccgcatacagtgccacataactcacagtatttgtgacaaataaatatttcccaaaaatacgcccataaattctttttgtatgtgctaatggtattgaaagctttcgtagtaggacttcagccatcttcactcaaattacctatccacgtgagaggcaggcttctgcttaaaactaattatttcttgtgctattatctgattagattattatgtgagtgagaagaagatggaactgctgtgctagaaaaattggcctaagtctaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtcatcaagaagaagccatgcacatcaaggcaaaaatttaccaattttgcagttaaaagtcaagaaaagacgaatgtacttttgttagagagacatagaataagagagacatacagaaataaagttttagagtttcttaactgttcttgagcgtagtactagagtttcttaaatttttggtcatcgtagtactagtttcttatgaaccagtttcttataaaaaacgtgtatcgtatcgtatcaaatatcctaagtcagcattagtcagcataacttccaaattacataacaatatccatccaagcaatcaataaaattttgatgacaatatccatccaagcaatcaataaaattttgatggccgagtccagagtacaatgcaatcaggctccagtggctggtgttgctattatttcgagatttcctttccattcttttggtttgtagtgggcatagaaataggttgtgggtattccctcggtgtgggtgcggtctttcgtgcttttgcaatcatttgttgacactccaaacagccggatggacaacccatcgcaacagtaaaatcgtgcaggatagcaaaatctcgcagaaactatggtttggctgtttatagcagctattgtacctattctcattgcctatgcatacagtttgggactggagctattccttgcaaaatatcgatggatatttgtttgcactattctcatgcctgtctcagttgtattcgaagtcttcctggttgtcaggaacaagatcactttcaagttgaagagtgcccccctcctgcatgataaaagggttcaaggcatacaaaaagctgtgaaagaaaggcatttggatgcaggggggacaaagatgtgcaccggaagacctggctggatgacaatgtcattgcgtgttggaaaatacaaaaaaacaagtacgaggatcaatctggatctttacgacattttggatattaatacagagaagaagacagtgcgtttagagcctcaggtgacaatgggtcagttatcagctgcattgattccaaatggatggaccattccagttgtaccagaattggatgatcttacagtgggtggcttgataatgggttgtggcatagagacatcatctcataaatatggcctatttcaacatatttgtgtttcatatgatttgattcttgcagacggacagcttgttcattgttcagagactcagaaccaagatttattctatggtattccttggtcacatggttctctgggtttcctcgttgcagccgaactgagaatcattcctgcgaaaaaatatgttcgtattgaacataaaccaatgcacagtctggcagaaatggcaaagaggttccaggcattgacggaagcaaaagtgcatgattttgtcgaatgtttggtgtattcgaaagagcagtctgtgataatgcttggcaccttagtggatgaggctgaagaatccaagataaatcgaatcggacatttttggaagccttggttctatgaacacgttcgcacatttctttctacggacgggccaatgactgaatatatcccaattagggactattaccacagacattcaagaagcttattctgggaaatgaaggatatcctgccatttggaaataacccagtctttcgctttctttttggctggacaatgcctccaaagatctctctcctgaagctcaccagtccgcagatcatacttgatctgtatgaaaagaaacatgttgtccaagatatggtagtgcctgtctcacgattacaatcttcacttgaatttttccacgacaaaattaagctttacccattatggctctgtcctgcgaacctcaagcacgtgcctggtctggtacatcctaatgggaaacaagacgaaatgtatgtggacataggagcttacggaaatccagtatgcagcaatttcaaaggaccaagcactatttcagaaatggagcaatttgttatcgagaaccatggcttccagctactctatgcagacagctatctctcgagaaaagatttcagaagaatgtttgatcacaaacttcacgatgagctgcgtcagaaatatggatgcaaagatgcttttcaggacatttatgataaagtttcaagagcagctagaaaataagtggactagttatctctatttgctgcagcgacggaacactacacttggggatgaacattcttataaaaacagagtaactgttcaatcatccatttgaacaggattgtcctgaaacaataaacaatgttcaatgaacaatgtttcaaaaaaatccctttgtggctccgaaaacatcgccttttgatgacagttttcattccttatgtgtggaagaagagaccaacggtgaacaaacgtgacttggtacgcaaaacaacgtgcacacatgtggaggtggcctgataatttcaaccaatgtcccaatgtcgctaaagaaatcagtttctcatttagtcgaagacaattttagatcactgtccatattgttatggacagtttttgaacagtatggacagcgatctagaattgtccttgagcaaatgagaaactgatttctttagcaacattcgttgacagtatcaggccacctccacatatgcacgttgttttgtgtaccaagtcacatgaacatatatgactcatatatgttcgccgttggtctctccttccacacatggaaaattaaaactttcatcaaaaggcgatatatgttcgaaagatttttttgaaacattgctttcaagctcactgtgtggatagccaaaacgaaacaaagctagcgatctgtaccatagaatcataacaaaatcgcatagaatcgtaatcagaaatcaaatgttcctttgacaatgggcttgtcaccaggattttttcatacagaatagatctcttttatgaaaaatcgttggaaagactggagcatgggttgggccttccacttggggtaaattaccactattttatagcctgtgtgatgtattttagctaattttaaccaactaccacttttttcaactgggacacaattatgattatggtctgtctcaatttagatatcacgtgaaaattcctaaaaataacaacatgtgtgtgacagtgttttgcatgagacattttgtgttatcgcagcaaatctcaaatgacattgcctgtacaaaaatacaaggctaaacatggccttgtacaggccaagttttagccttgtagaggggattatgaccttgttatgaccttgtactaaccttggaaaaaaattacaaggctatcagtaaaattccaagctgcaaccagtctaacacaaggtttccacaaggcttctacaaggctaattagcatttttcaagccatttataaggttacagcaaggctattccacgctataacaaggttacaaggccataactacaaggcttgtacatggctattacatggcnnnnnnnnnnnnntatcatcaaattgctaagcaaaccagaaaagctacaaacttctgcttaccatcctgtacaaaaatacaagactaaacttggc

Transcript

scaffold1360.g4.t2

TCCTAGATACCAAAAATGATTGACAGGACCTTGAAAAGCTGCAAATGTTGCAATGCAAAGTGTTCTACGGAAATTGTGACTTCCACCTTTTCCTTGTGCCTTTCTTTCCACGACCTGTGTAACTGCATCTCCAACCGCATACAGTGCCACATAACTCACAGTATTTGTGACAAATAAATATTTCCCAAAAATACGCCCATAAATTCTTTTTGTATGTGCTAATGGTATTGAAAGCTTTCGTAGTAGGACTTCAGCCATCTTCACTCAAATTACCTATCCACGTGAGAGGCAGGCTTCTGCTTAAAACTAATTATTTCTTGTGCTATTATCTGATTAGATTATTATGTGAGTGAGAAGAAGATGGAACTGCTGTGCTAGAAAAATTGGCCTAAGTCTAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgtcatcaagaagaagccatgcacatcaaggcaaaaatttaccaattttgcagttaaaagtcaagaaaagacgaatgtacttttgttagagagacatagaataagagagacatacagaaataaagttttagagtttcttaactgttcttgagcgtagtactagagtttcttaaatttttggtcatcgtagtactagtttcttatgaaccagtttcttataaaaaaCGTGTATCGTATCGTATCAAATATCCTAAGTCAGCATTAGTCAGCATAACTTCCAAATTACATAACAATATCCATCCAAGCAATCAATAAAATTTTGATGACAATATCCATCCAAGCAATCAATAAAATTTTGATGGCCGAGTCCAGAGTACAATGCAATCAGGCTCCAGTGGCTGGTGTTGCTATTATTTCGAGATTTCCTTTCCATTCTTTTGGTTTGTAGTGGGCATAGAAATAGGTTGTGGGTATTCCCTCGGTGTGGGTGCGGTCTTTCGTGCTTTTGCAATCATTTGTTGACACTCCAAACAGCCGGATGGACAACCCATCGCAACAGTAAAATCGTGCAGGATAGCAAAATCTCGCAGAAACTATGGTTTGGCTGTTTATAGCAGCTATTGTACCTATTCTCATTGCCTATGCATACAGTTTGGGACTGGAGCTATTCCTTGCAAAATATCGATGGATATTTGTTTGCACTATTCTCATGCCTGTCTCAGTTGTATTCGAAGTCTTCCTGGTTGTCAGGAACAAGATCACTTTCAAGTTGAAGAGTGCCCCCCTCCTGCATGATAAAAGGGTTCAAGGCATACAAAAAGCTGTGAAAGAAAGGCATTTGGATGCAGGGGGGACAAAGATGTGCACCGGAAGACCTGGCTGGATGACAATGTCATTGCGTGTTGGAAAATACAAAAAAACAAGTACGAGGATCAATCTGGATCTTTACGACATTTTGGATATTAATACAGAGAAGAAGACAGTGCGTTTAGAGCCTCAGGTGACAATGGGTCAGTTATCAGCTGCATTGATTCCAAATGGATGGACCATTCCAGTTGTACCAGAATTGGATGATCTTACAGTGGGTGGCTTGATAATGGGTTGTGGCATAGAGACATCATCTCATAAATATGGCCTATTTCAACATATTTGTGTTTCATATGATTTGATTCTTGCAGACGGACAGCTTGTTCATTGTTCAGAGACTCAGAACCAAGATTTATTCTATGGTATTCCTTGGTCACATGGTTCTCTGGGTTTCCTCGTTGCAGCCGAACTGAGAATCATTCCTGCGAAAAAATATGTTCGTATTGAACATAAACCAATGCACAGTCTGGCAGAAATGGCAAAGAGGTTCCAGGCATTGACGGAAGCAAAAGTGCATGATTTTGTCGAATGTTTGGTGTATTCGAAAGAGCAGTCTGTGATAATGCTTGGCACCTTAGTGGATGAGGCTGAAGAATCCAAGATAAATCGAATCGGACATTTTTGGAAGCCTTGGTTCTATGAACACGTTCGCACATTTCTTTCTACGGACGGGCCAATGACTGAATATATCCCAATTAGGGACTATTACCACAGACATTCAAGAAGCTTATTCTGGGAAATGAAGGATATCCTGCCATTTGGAAATAACCCAGTCTTTCGCTTTCTTTTTGGCTGGACAATGCCTCCAAAGATCTCTCTCCTGAAGCTCACCAGTCCGCAGATCATACTTGATCTGTATGAAAAGAAACATGTTGTCCAAGATATGGTAGTGCCTGTCTCACGATTACAATCTTCACTTGAATTTTTCCACGACAAAATTAAGCTTTACCCATTATGGCTCTGTCCTGCGAACCTCAAGCACGTGCCTGGTCTGGTACATCCTAATGGGAAACAAGACGAAATGTATGTGGACATAGGAGCTTACGGAAATCCAGTATGCAGCAATTTCAAAGGACCAAGCACTATTTCAGAAATGGAGCAATTTGTTATCGAGAACCATGGCTTCCAGCTACTCTATGCAGACAGCTATCTCTCGAGAAAAGATTTCAGAAGAATGTTTGATCACAAACTTCACGATGAGCTGCGTCAGAAATATGGATGCAAAGATGCTTTTCAGGACATTTATGATAAAGTTTCAAGAGCAGCTAGAAAATAAGTGGACTAGTTATCTCTATTTGCTGCAGCGACGGAACACTACACTTGGGGATGAACATTCTTATAAAAACAGAGTAACTGTTCAATCATCCATTTGAACAGGATTGTCCTGAAACAATAAACAATGTTCAATGAACAATGTTTCAAAAAAATCCCTTTGTGGCTCCGAAAACATCGCCTTTTGATGACAGTTTTCATTCCTTATGTGTGGAAGAAGAGACCAACGGTGAACAAACGTGACTTGGTACGCAAAACAACGTGCACACATGTGGAGGTGGCCTGATAATTTCAACCAATGTCCCAATGTCGCTAAAGAAATCAGTTTCTCATTTAGTCGAAGACAATTTTAGATCACTGTCCATATTGTTATGGACAGTTTTTGAACAGTATGGACAGCGATCTAGAATTGTCCTTGAGCAAATGAGAAACTGATTTCTTTAGCAACATTCGTTGACAGTATCAGGCCACCTCCACATATGCACGTTGTTTTGTGTACCAAGTCACATGAACATATATGACTCATATATGTTCGCCGTTGGTCTCTCCTTCCACACATGGAAAATTAAAACTTTCATCAAAAGGCGATATATGTTCGAAAGATTTTTTTGAAACATTGCTTTCAAGCTCACTGTGTGGATAGCCAAAACGAAACAAAGCTAGCGATCTGTACCATAGAATCATAACAAAATCGCATAGAATCGTAATCAGAAATCAAATGTTCCTTTGACAATGGGCTTGTCACCAGGATTTTTTCATACAGAATAGATCTCTTTTATGAAAAATCGTTGGAAAGACTGGAGCATGGGTTGGGCCTTCCACTTGGGGTAAATTACCACTATTTTATAGCCTGTGTGATGTATTTTAGCTAATTTTAACCAACTACCACTTTTTTCAACTGGGACACAATTATGATTATGGTCTGTCTCAATTTAGATATCACGTGAAAATTCCTAAAAATAACAACATGTGTGTGACAGTGTTTTGCATGAGACATTTTGTGTTATCGCAGCAAATCTCAAATGACATTGcctgtacaaaaatacaaggctaaacatggccttgtacaggccaagttttagccttgtagaggggattatgaccttgttatgaccttgtactaaccttggaaaaaaattacaaggctatcagtaaaattccaagctgcaaccagtctaacacaaggtttccacaaggcttctacaaggctaattagcatttttcaagccatttataaggttacagcaaggctattccacgctataacaaggttacaaggccataactacaaggcttgtacatggctattacatggcNNNNNNNNNNNNNTAtcatcaaattgctaagcaaaccagaaaagctacaaacttctgcttaccatcctgtacaaaaatacaagactaaacttggc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR040165 all species →	Family	Delta(24)-sterol reductase	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10801 all species →	24-DEHYDROCHOLESTEROL REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0000246 all species →	Molecular Function	delta24(24-1) sterol reductase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008202 all species →	Biological Process	steroid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09828	DHCR24, DWF1; Delta24-sterol reductase	EC:1.3.1.72 EC:1.3.1.-	Steroid biosynthesis	ko00100	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.