Gene detail

Detailed information of scaffold137.g4.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold137:62500...73624
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold137.g4.t3

gaacttgcagaccacgacagttattgcttttgaagatccacttaggatgtcgcccgctgttgacccttaagaaggtgatttacagagatggcaaacgtaatacaacctttttcaacggatttacagttcgtcgaagtttctgtgtgtcaaatcatgaccattctaccaaaaccagttacatatggaaaatgttgatgatgttaccaaatgttcatagcaaaggccccgttgcatctaatataatggcatttggttgcacgaaggaaatttgcctgtattcctttcctttacaaatggtcgggaacacaggctaggaggaacttagcttgcattcgttcagaagtatcaccgttggtataggccttccctgaggagacgtgtattccactttttatgtcaaacaaagatgttgctgcagaagctgtcacaggatctggcaaaacactggcatttgtcatcccaatagtagagattttgatgcaaagggaacaaaaacttaaaaagaaccaggttggtgcaataattttaacaccaacaagagagcttgctgttcagatcaatgaagttcttgagatgctcacaaaagattgttcactaagttggccattgcttcaatccaaacatcaagggagagattaacgacaaacaaaatgacaatgtataacaactaacggaaagactatgaaaaaactctttttaagagatgaataacaattgtttttcatataaaatgctaactagatgtactcttttgagagtgcccatctaaatttatgaatcttctaaagtggttgtatatacatggtctattaagagttaatttttatgacaaagtgtgtatctcgatgcacttagctacttctgaggaacatgatttaatataataacgaggaacatgatttagtataatgacacacaaataggaccaaaaatagttcttcgatttttaaatttcgaaacttctttcatggttcttacaagcattaagagtagaaaggtttttgtcactggtcgccttttgtaatgacttagatttgcataatgcatattaagccacctctgtgcaggagccaacaaagttgcttgcagttgaaaaggatcttttaacatcttgattcagaattctctccgagactcttgtaccccgggctattgtttctcagttcatattttcttcaagccttgttggaatggtgttcacttgtgaaccgcttgagttcaatttcgtcaaaagaaggcccatttccaggctacaacgcgtagcaaagggctttgagtgggctattttcttcctaacattatcggtgtgtttgagtattttagggagaaaacattgtttattctctttcattgtggtatcgatatcttgatagatgttcttgagttgattggaaataactgtaactgtgagagattcgtgaaactcatagtttttattcattttgtgttcgtgtttggattctttgtaatttcttggaggctttcgtagatattcttggttactttgatctttaacagtagaaacctgaccgagtttgttatgtgtaatttctgtttgtattacattggtcacaatttgctttcttgcattctacgccccaaactccagcttctctgcccaaacgacaaaacccttccgattttctttccattaatttcagtcactaatttcacagcagctgtgataagagaggcgataattcccagaccaaagacatgtagaagcttggttataaactgcatcagatcgtcatgctctgcatttggataaacatcgccgtatcctattgtcgtaagggtctggaaccaatagtatgtgctgtcgatcatagtcaagttgccatactttttcactgtgttgacatatgaaacactgaaaaagaacacaacaaaaaccagcgtcatggcaaagaacgtctttgctgttaggcctctgggatcttgtctttttaggcattttgtttcgatgaaacagatcagatttcgaatggcttttgtgatgagttcagatgatgtcgtatacatggctattgataacgggattccaaatgccgcgtagactatcgttgtcattttgccaatttctgtttttggtgttattcgtccatagcctgtgtgagaaatgaaacagttaatgtaga

Transcript

scaffold137.g4.t3

GAACTTGCAGACCACGACAGTTATTGCTTTTGAAGATCCACTTAGGATGTCGCCCGCTGTTGACCCTTAAGAAGGTGATTTACAGAGATGGCAAACGTAATACAACCTTTTTCAACGGATTTACAGTTCGTCGAAGTTTCTGTGTGTCAAATCATGACCATTCTACCAAAACCAGTTACATATGGAAAATGTTGATGATGTTACCAAATGTTCATAGCAAAGGCCCCGTTGCATCTAATATAATGGCATTTGGTTGCACGAAGGAAATTTGCCTGTATTCctttcctttacaaatggtcgggaacacaggctaGGAGGAACTTAGCTTGCATTCGTTCAGAAGTATCACCGTTGGTATAGGCCTTCCCTGAGGAGACGTGTATTCCACTTTTTATGTCAAACAAAGATGTTGCTGCAGAAGCTGTCACAGGATCTGGCAAAACACTGGCATTTGTCATCCCAATAGTAGAGATTTTGATGCAAAGGGAACAAAAACTTAAAAAGAACCAGGTTGGTGCAATAATTTTAACACCAACAAGAGAGCTTGCTGTTCAGATCAATGAAGTTCTTGAGATGCTCACAAAAGATTGTTCACTAAGTTGGCCATTGCTTCAATCCAAACATCAAGGGAGAGATTAACGACAAACAAAATGACAATGTATAACAACTAACGGAAAGACTATGAAAAAACTCTTTTTAAGAGATGAATAACAATTGTTTTTCATATAAAATGCTAACTAGATGTACTCTTTTGAGAGTGCCCATCTAAATTTATGAATCTTCTAAAGTGGTTGTATATACATGGTCTATTAAGAGTTAATTTTTATGACAAAGTGTGTATCTCGATGCACTTAGCTACTTCTGAGGAACATGATTTAATATAATAACGAGGAACATGATTTAGTATAATGACACACAAATAGGACCAAAAATAGTTCTTCGATTTTTAAATTTCGAAACTTCTTTCATGGTTCTTACAAGCATTAAGAGTAGAAAGGTTTTTGTCACTGGTCGCCTTTTGTAATGACTTAGATTTGCATAATGCATATTAAGCCACCTCTGTGCAGGAGCCAACAAAGTTGCTTGCAGTTGAAAAGGATCTTTTAACATCTTGATTCAGAATTCTCTCCGAGACTCTTGTACCCCGGGCTATTGTTTCTCAGTTCATATTTTCTTCAAGCCTTGTTGGAATGGTGTTCACTTGTGAACCGCTTGAGTTCAATTTCGTCAAAAGAAGGCCCATTTCCAGGCTACAACGCGTAGCAAAGGGCTTTGAGTGGGCTATTTTCTTCCTAACATTATCGGTGTGTTTGAGTATTTTAGGGAGAAAACATTGTTTATTCTCTTTCATTGTGGTATCGATATCTTGATAGATGTTCTTGAGTTGATTGGAAATAACTGTAACTGTGAGAGATTCGTGAAACTCATAGTTTTTATTCATTTTGTGTTCGTGTTTGGATTCTTTGTAATTTCTTGGAGGCTTTCGTAGATATTCTTGGTTACTTTGATCTTTAACAGTAGAAACCTGACCGAGTTTGTTATGTGTAATTTCTGTTTGTATTACATTGGTCACAATTTGCTTTCTTGCATTCTACGCCCCAAACTCCAGCTTCTCTGCCCAAACGACAAAACCCTTCCGATTTTCTTTCCATTAATTTCAGTCACTAATTTCACAGCAGCTGTGATAAGAGAGGCGATAATTCCCAGACCAAAGACATGTAGAAGCTTGGTTATAAACTGCATCAGATCGTCATGCTCTGCATTTGGATAAACATCGCCGTATCCTATTGTCGTAAGGGTCTGGAACCAATAGTATGTGCTGTCGATCATAGTCAAGTTGCCATACTTTTTCACTGTGTTGACATATGAAACACTGAAAAAGAACACAACAAAAACCAGCGTCATGGCAAAGAACGTCTTTGCTGTTAGGCCTCTGGGATCTTGTCTTTTTAGGCATTTTGTTTCGATGAAACAGATCAGATTTCGAATGGCTTTTGTGATGAGTTCAGATGATGTCGTATACATGGCTATTGATAACGGGATTCCAAATGCCGCGTAGACTATCGTTGTCATTTTGCCAATTTCTGTTTTTGGTGTTATTCGTCCATAGCCTGTGTGAGAAATGAAACAGTTAATGTAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold137.g4.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.