Gene detail

Detailed information of scaffold1395.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1395:14416...36250
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1395.g2.t1

ccagtccatacggaagcggtcactggtgtagttggaagagctgaggtcctggcatgcatgttgtttatcatctcactgcatctttatgcaagaatcgtctctgaaagtgagaatttgcaaacagacaataacaacatcagacacaaagatataaaggttcaaagcaagttcttggttgttttatgcatcatttctggtagtatggcaatgctttgtaaagaaaatggaatcactgtctttggagcttgcattgcatatgatttgttgcaaaacaaagagaagttggtcagctatatgacaaacaagcataaacatctgccagaaaagctgaaggaaatggtcacacgggtttccatcttacttgggacgattgctgttctgatggcccttagactacgcatgctccatggccagctccctgctttcaacgaagaagataatccagcatcctttgcgccacatatttcaactagattcatgacatattgctacctatgtgctttcaatatgtggttgttgctagaaaaagtcaaatggtcactcttgttggaatttctataatggtcatttcatttcttcctgcttcgaatttatttatcaaagttggttttgtagttgcagagagaatcttgtatattccgagccttggattttgtattttattggcccatggcttcagtttcatatcacaaaagctggcaacatcaccagagtcaaatcacaaacctgcgggacttgcaaacggtttaaatcatgaaaaggaaaagtctccaaagaaaacatcaacaccgtcaagacatgaacaattattgatgattgccattgcaatcttagtagctattctcatgtgcaggactattgacagaaataaagtttggcgcaacagagaaactctttttcggtctggtgtagaaactttaccccacaatgcaaaagcacattataactatgcaaattttttgaaagactcaaacagaatagatgaggctatccatcattacaggacggcaatcaaactatatccaaagcacgccagttcacataataacctggcaacattattaggaaattcagaggaagcagaatttcacttcaagcaaacactcttacacaatccttatcattataaagcaatgttcaatcttgcaggcttttataggaaaaagaatatgaacacagctgctaaagtctttctggaaagtgcactaagaattaatccagattacgttgatgcaatacaagttttagctgaagtgctccatgcccttggccaaaccgaaaaaggcaaacacatatactatcaagcatcgttgaagaacagaaacccagacttcttcaataattatggtgttttcctcggcagtattggaaaaggtgatgcggctatgaaggcgtacgagaaagcaatagaattgcagccatcacacaaagtttcctttgtcaatttgggacgtcaattaaaagcactggggaagtttaatgatgcagaaaaagtttatcgaaaagcactgacatttggcagagacggcaacacgttacatttactaggcatattactgtaccaaatgaaacgattgaaggaaagtgaattggcattccttgaagctcttaagcacgatcgtcataacacagaatacatacgaaatcatgctgccgcagtatttgagcaaggccaaagagaagacgcaatccaattattgaaagatgctttgaagttaaccccaaatgaagtaatgattacaaagactcttgcaaattttttgatgagtctaaatcgacaaaatgaggcattgctgtcaattaacaatggattgaaaacaaatgacaaggatacagagctacacaatatgaaagcaaatgcattgagagaattgagtcaacttgatctggcgcttaagagctacaaagatgttatcaagcttgatccgaatcatttcagtgctttgcaaaatatcggagtgatataccatttgcggggtttcaaaatagaagcaaaacattattatgaaaaagcaattgtccttgatccaaacaaccaagtattgaaggacaacatcgccaagctgctgagaacaatgtagttattgcacaatggatcatacgccagaagatggggtttcgcccttttactgcaagaggggaaggtctcttacctctgcagccgtagccccttttaataaaatcactagaattca

Transcript

scaffold1395.g2.t1

CCAGTCCATACGGAAGCGGTCACTGGTGTAGTTGGAAGAGCTGAGGTCCTGGCATGCATGTTGTTTATCATCTCACTGCATCTTTATGCAAGAATCGTCTCTGAAAGTGAGAATTTGCAAACAGACAATAACAACATCAGACACAAAGATATAAAGGTTCAAAGCAAGTTCTTGGTTGTTTTATGCATCATTTCTGGTAGTATGGCAATGCTTTGTAAAGAAAATGGAATCACTGTCTTTGGAGCTTGCATTGCATATGATTTGTTGCAAAACAAAGAGAAGTTGGTCAGCTATATGACAAACAAGCATAAACATCTGCCAGAAAAGCTGAAGGAAATGGTCACACGGGTTTCCATCTTACTTGGGACGATTGCTGTTCTGATGGCCCTTAGACTACGCATGCTCCATGGCCAGCTCCCTGCTTTCAACGAAGAAGATAATCCAGCATCCTTTGCGCCACATATTTCAACTAGATTCATGACATATTGCTACCTATGTGCTTTCAATATGTGGTTGTTGCTAGAAAAAGTCAAATGGTCACTCTTGTTGGAATTTCTATAATGGTCATTTCATTTCTTCCTGCTTCGAATTTATTTATCAAAGTTGGTTTTGTAGTTGCAGAGAGAATCTTGTATATTCCGAGCCTTGGATTTTGTATTTTATTGGCCCATGGCTTCAGTTTCATATCACAAAAGCTGGCAACATCACCAGAGTCAAATCACAAACCTGCGGGACTTGCAAACGGTTTAAATCATGAAAAGGAAAAGTCTCCAAAGAAAACATCAACACCGTCAAGACATGAACAATTATTGATGATTGCCATTGCAATCTTAGTAGCTATTCTCATGTGCAGGACTATTGACAGAAATAAAGTTTGGCGCAACAGAGAAACTCTTTTTCGGTCTGGTGTAGAAACTTTACCCCACAATGCAAAAGCACATTATAACTATGCAAATTTTTTGAAAGACTCAAACAGAATAGATGAGGCTATCCATCATTACAGGACGGCAATCAAACTATATCCAAAGCACGCCAGTTCACATAATAACCTGGCAACATTATTAGGAAATTCAGAGGAAGCAGAATTTCACTTCAAGCAAACACTCTTACACAATCCTTATCATTATAAAGCAATGTTCAATCTTGCAGGCTTTTATAGGAAAAAGAATATGAACACAGCTGCTAAAGTCTTTCTGGAAAGTGCACTAAGAATTAATCCAGATTACGTTGATGCAATACAAGTTTTAGCTGAAGTGCTCCATGCCCTTGGCCAAACCGAAAAAGGCAAACACATATACTATCAAGCATCGTTGAAGAACAGAAACCCAGACTTCTTCAATAATTATGGTGTTTTCCTCGGCAGTATTGGAAAAGGTGATGCGGCTATGAAGGCGTACGAGAAAGCAATAGAATTGCAGCCATCACACAAAGTTTCCTTTGTCAATTTGGGACGTCAATTAAAAGCACTGGGGAAGTTTAATGATGCAGAAAAAGTTTATCGAAAAGCACTGACATTTGGCAGAGACGGCAACACGTTACATTTACTAGGCATATTACTGTACCAAATGAAACGATTGAAGGAAAGTGAATTGGCATTCCTTGAAGCTCTTAAGCACGATCGTCATAACACAGAATACATACGAAATCATGCTGCCGCAGTATTTGAGCAAGGCCAAAGAGAAGACGCAATCCAATTATTGAAAGATGCTTTGAAGTTAACCCCAAATGAAGTAATGATTACAAAGACTCTTGCAAATTTTTTGATGAGTCTAAATCGACAAAATGAGGCATTGCTGTCAATTAACAATGGATTGAAAACAAATGACAAGGATACAGAGCTACACAATATGAAAGCAAATGCATTGAGAGAATTGAGTCAACTTGATCTGGCGCTTAAGAGCTACAAAGATGTTATCAAGCTTGATCCGAATCATTTCAGTGCTTTGCAAAATATCGGAGTGATATACCATTTGCGGGGTTTCAAAATAGAAGCAAAACATTATTATGAAAAAGCAATTGTCCTTGATCCAAACAACCAAGTATTGAAGGACAACATCGCCAAGCTGCTGAGAACAATGTAGTTATTGCACAATGGATCATACGCCAGAAGATGGGGTTTCGCCCTTTTACTGCAAGAGGGGAAGGTCTCTTACCTCTGCAGCCGTAGCCCCTTTTAATAAAATCACTAGAATTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR052943 all species →	Family	TMTC O-mannosyl-transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44809 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.