Gene detail

Detailed information of scaffold14.g14.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold14:297110...323174
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold14.g14.t2

catcaaagaagactgggttctacctgcagcgattgtgaatccaggtcaaagatttcaaaatggcaggggcaatggatcgtgcaaaaaagttggcaaagattcgcgatgaagagaatgagagcaaatttggatttgtgcacggcgtatctggacctgtggtcattgcagagagaatgagtggagctgccatgtacgaacttgtgagggttggtcatggggaattggttggagaaattattcgtcttgaaggcgacatggccaccattcaagtttatgaggaaacctctggtgtaactgttggggatcctgtgttgagaactggaaagcctctttctgttgagctgggacctggtattatgggaagcatttttgatggaattcaacgaccactgaaggatatctgtgaaatgacgcaaagtatctacattcctcgtggtgtaaatacggaaagtttgagcagaactgtagcatgggacttcactccagcacagatcaaggttgggactcatatcactggtggagatatttatggttctgtccgtgaaaattctcttatcaagcataaactgatgttgcatccaagagccagggggaccgtcacatacatagctgaaccaggcaaccataacctagacgacgtcattttggaaacagaatttgaaggagaaaaaaccaaacataccatgttacaggtatggcctgtacgacaaatgagaccatgcaccgagaagttggctggaaatcatcctttattgactggccagagagtgcttgatgcattatttccatgtgtgcaaggaggaacaactgcaatcccaggtgcttttggttgtggcaaaactgtcacctcgcaatctttgtcgaaatattcaaattcggacgtcattatctatgttggttgcggtgaaagaggaaatgaaatgtcagaagtactcagggactttccagagctttcagttgaaattggaggagttactgaatcaattatgaaaagaacagcattagtagcaaatacttcaaacatgcccgtagctgcaagagaagcttcaatttatactggaatcacattatctgaatacttccgtgatatgggtttcaatgttagtatgatggcagattcgacatcaagatgggctgaagcattgagagaaatttctggtcgtctcgccgaaatgcctgcagacagtggttatcctgcttatctagcagctaggctcgcttctttctatgagcgtgcaggccgtgtcacgtgtcttggtaatccagcaagagaaggcagtgttagcattgttggtgctgtgtccccacctggtggtgatttcgctgatcctgtcacttcagctacattaggtattgtacaggtgagtgatagtgattactgtgttagcattgttggtgctgtgtccccacctggtggtgatttcgctgatcctgtcacttcagctacattaggtattgtacaggtattctggggattggacaagaagctagctcagcgtaaacattttccgtcaataaattggctgatcagttatagcaaatacatgagggcacttgatgattactatgagaagagttatccagaatttgtgcctctaagaactaagagttcattggctgaatcagacaagatcacattagaagttgcaaagcttatcaaggatgatttcctgcaacaaaatggttattcatcatacgatcgatactgccccttttacaagaccgtaggaatgttgacgaatatcattgctttctacgatgcagcaaggcacgctgtagagacaactgtacattcagataacaaaatcacttggggaatcatcaaagagcagatgggagataatgttttgtatcaactgagtagtatgaaattcaaggatccagtaaaagacggaaaagagacaataatgaatgattaccgtgatttgtatgaccagatgcagcaatcattcagaaacttggaggaattttagaatatttaaatgggacatggtcaacgaaacttgggcaggagaactataattattttttattagtttgaagtatggatgtggatgtaaaggcagcaggctcttgcaataagcctacgataactgtttcctttggacaatagcaattttgaaaaggggcctagccatgattagtaccatggacattttccaaagcacctgtcaattttaattttcagtttttttattttgaaaagaataaaagacacatggacatagccctgattaaacgaatataataaaaatgtgatagaatgataaagtcgtgccacatctccaaaataagcgtgcatgtgcgtgctccttttcctcttcttttacaaaaataacacttgggatggaatgcaatgcaaggaccgattcttcaaaagaaaagccatttcaagaacaattgaggcatgtcaaggtataattctttcaaaggtaaaaactaaaggtcaaaattgagaattcttttgcataatgcctgtgatatcaaatcaaggcaaggccctttctcaaaacctcttggtttcaggtgcactacaaattgtgaccttctgaactcatatctctggtgttcggtggacgattttaaaatgcaaggtatgagtatttaagttgaagatcaacaaatgtagctatgaactcaaaaagtcccgatattttatcattttgttcccttgtttattcaaaagggggtgcttttttagacatccagtatttgggtataaagatattgcgtggggatggctcagcggcagcacgcttgactaccatcctgagttgatggttcgagtccccgccctgccgaacctgcaacaaagtgtgaagagagtcatcaattctctgttaatcacgaggtgtggtcacatcgagaagaagaaccaggacgctgcttcgataagcttagcttctcagcgtcctaaaactaccttcggatgcaaggtagaaatatagaagaaaaaaaagatattgccgttacatctacgttcattggtaagcctagcaagatggatcagcctaattatttaattaataatgatttgaaagcgtatgatagatagtaaatttcctccaaccccgcccccagttcttcacggtcgacccaactttgcacgactattggacagaaaggtaatgcttaattacttaatagctactttaaaggaacaatgatcagtataaaacacattggttaatatttactgatgacgtcttgttgttaataacaaagaaaaaatgaaggattgttgggcaactagcctgcgtgcagcctcaaagttgaagctgcacgcaggctatggccaacaggacaccgacaattctgcaatatttaaggtgataattgttatgaggatggaaaaatactttctttatacgtttgaatttttgtatttgcttaaatgaatatttttaagtcag

Transcript

scaffold14.g14.t2

CATCAAAGAAGACTGGGTTCTACCTGCAGCGATTGTGAATCCAGGTCAAAGATTTCAAAATGGCAGGGGCAATGGATCGTGCAAAAAAGTTGGCAAAGATTCGCGATGAAGAGAATGAGAGCAAATTTGGATTTGTGCACGGCGTATCTGGACCTGTGGTCATTGCAGAGAGAATGAGTGGAGCTGCCATGTACGAACTTGTGAGGGTTGGTCATGGGGAATTGGTTGGAGAAATTATTCGTCTTGAAGGCGACATGGCCACCATTCAAGTTTATGAGGAAACCTCTGGTGTAACTGTTGGGGATCCTGTGTTGAGAACTGGAAAGCCTCTTTCTGTTGAGCTGGGACCTGGTATTATGGGAAGCATTTTTGATGGAATTCAACGACCACTGAAGGATATCTGTGAAATGACGCAAAGTATCTACATTCCTCGTGGTGTAAATACGGAAAGTTTGAGCAGAACTGTAGCATGGGACTTCACTCCAGCACAGATCAAGGTTGGGACTCATATCACTGGTGGAGATATTTATGGTTCTGTCCGTGAAAATTCTCTTATCAAGCATAAACTGATGTTGCATCCAAGAGCCAGGGGGACCGTCACATACATAGCTGAACCAGGCAACCATAACCTAGACGACGTCATTTTGGAAACAGAATTTGAAGGAGAAAAAACCAAACATACCATGTTACAGGTATGGCCTGTACGACAAATGAGACCATGCACCGAGAAGTTGGCTGGAAATCATCCTTTATTGACTGGCCAGAGAGTGCTTGATGCATTATTTCCATGTGTGCAAGGAGGAACAACTGCAATCCCAGGTGCTTTTGGTTGTGGCAAAACTGTCACCTCGCAATCTTTGTCGAAATATTCAAATTCGGACGTCATTATCTATGTTGGTTGCGGTGAAAGAGGAAATGAAATGTCAGAAGTACTCAGGGACTTTCCAGAGCTTTCAGTTGAAATTGGAGGAGTTACTGAATCAATTATGAAAAGAACAGCATTAGTAGCAAATACTTCAAACATGCCCGTAGCTGCAAGAGAAGCTTCAATTTATACTGGAATCACATTATCTGAATACTTCCGTGATATGGGTTTCAATGTTAGTATGATGGCAGATTCGACATCAAGATGGGCTGAAGCATTGAGAGAAATTTCTGGTCGTCTCGCCGAAATGCCTGCAGACAGTGGTTATCCTGCTTATCTAGCAGCTAGGCTCGCTTCTTTCTATGAGCGTGCAGGCCGTGTCACGTGTCTTGGTAATCCAGCAAGAGAAGGCAGTGTTAGCATTGTTGGTGCTGTGTCCCCACCTGGTGGTGATTTCGCTGATCCTGTCACTTCAGCTACATTAGGTATTGTACAGGTGAGTGATAGTGATTACTGTGTTAGCATTGTTGGTGCTGTGTCCCCACCTGGTGGTGATTTCGCTGATCCTGTCACTTCAGCTACATTAGGTATTGTACAGGTATTCTGGGGATTGGACAAGAAGCTAGCTCAGCGTAAACATTTTCCGTCAATAAATTGGCTGATCAGTTATAGCAAATACATGAGGGCACTTGATGATTACTATGAGAAGAGTTATCCAGAATTTGTGCCTCTAAGAACTAAGAGTTCATTGGCTGAATCAGACAAGATCACATTAGAAGTTGCAAAGCTTATCAAGGATGATTTCCTGCAACAAAATGGTTATTCATCATACGATCGATACTGCCCCTTTTACAAGACCGTAGGAATGTTGACGAATATCATTGCTTTCTACGATGCAGCAAGGCACGCTGTAGAGACAACTGTACATTCAGATAACAAAATCACTTGGGGAATCATCAAAGAGCAGATGGGAGATAATGTTTTGTATCAACTGAGTAGTATGAAATTCAAGGATCCAGTAAAAGACGGAAAAGAGACAATAATGAATGATTACCGTGATTTGTATGACCAGATGCAGCAATCATTCAGAAACTTGGAGGAATTTTAGAATATTTAAATGGGACATGGTCAACGAAACTTGGGCAGGAGAACTATAATTATTTTTTATTAGTTTGAAGTATGGATGTGGATGTAAAGGCAGCAGGCTCTTGCAATAAGCCTACGATAACTGTTTCCTTTGGACAATAGCAAttttgaaaaggggcctagccatgattagtaccatggacattttccaaagcacctgtcaattttaattttcagtttttttattttgaaaagaataaaagacacatggacatagccctgattaaacgaatataataaaaatgtgatagaatgataaagtcgtgccacatctccaaaataagcgtgcatgtgcgtgctccttttcctcttcttttacaaaaataacacttgggatggaatgcaatgcaaggaccgattcttcaaaagaaaagccatttcaagaacaattgaggcatgtcaaggtataattctttcaaaggtaaaaactaaaggtcaaaattgagaattcttttgcataatgcctgtgatatcaaatcaaggcaaggccctttctcaaaacctcttggtttcaggtgcactacaaattgtgaccttctgaactcatatctctggtgttcggtggacgattttaaaatgcaaggtatgagtatttaagttgaagatcaacaaatgtagctatgaactcaaaaagtcccgatattttatcattttgttcccttgtttattcaaaagggggtgcttttttagacatccagtatTTGGGTATAAAGATATTGCgtggggatggctcagcggcagcacgcttgactaccatcctgagttgatggttcgagtccccgccctgccgaacctgcaacaaagtgtgaagagagtcatcaattctctgttaatcacgaggtgtggtcacatcgagaagaagaaccaggacgctgcttcgataagcttagcttctcagcgtcctaaaactaccttcggatgcaaggtagaaatatagaagaaaaaaAAGATATTGCCGTTACATCTACGTTCATTGGTAAGCCTAGCAAGATGGATCAGCCTAATTATTTAATTAATAATGATTTGAAAGCGTATGATAGATAGTAAATTTCCTCCAACCCCGCCCCCAGTTCTTCACGGTCGACCCAACTTTGCACGACTATTGGACAGAAAGGTAATGCTTAATTACTTAATAGCTACTTTAAAGGAACAATGATCAGTATAAAACACATTGGTTAATATTTACTGATGACGTCTTGTTGTTAATAACAAAGAAAAAATGAAGGATTGTTGGGCAACTAGCCTGCGTGCAGCCTCAAAGTTGAAGCTGCACGCAGGCTATGGCCAACAGGACACCGACAATTCTGCAATATTTAAGGTGATAATTGTTATGAGGATGGAAAAATACTTTCTTTATACGTTTGAATTTTTGTATTTGCTTAAATGAATATTTTTAAGTCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan
PF16886 all species →	ATP-synt_ab_Xtn	ATPsynthase alpha/beta subunit N-term extension	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023366 all species →	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan
IPR022878 all species →	Family	V-type ATP synthase catalytic alpha chain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR005725 all species →	Family	ATPase, V1 complex, subunit A	Interproscan
IPR024034 all species →	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR020003 all species →	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR031686 all species →	Domain	ATPsynthase alpha/beta subunit, N-terminal extension	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43607 all species →	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033180 all species →	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02145	ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A	EC:7.1.2.2	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.