Gene detail

Detailed information of scaffold141.g17.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold141:190097...208904
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold141.g17.t2

ggtcaagaacgtgccaattctggttaaatttgttattgtgtcagggtaaacatcttggtgatttatccatcttatggtgtcaaatctgtctaacatgaaataagccgacgtcgaattttgctataggatcgcgggaaacttctgtcttgtgtgcgctttctgtgcgctttctttatttcagtgccaattagcagagataaaacgttaatcaattgctataacgagcgtgatggaattgatgaatgatggcttctagtatgccaagcagcaaactgagttttcgccaaaatgattctccaagaattctggttgtatacactggtggaacaatagggatgatgcaggatccagaaaggggatatgttgtcaaagaaaattactttgtctcatcattgaaaaagttgccaatgttttatgacaaagaatttgtggagcaaactcagacactaacagctgaagatacattgccaagtgcttacaaagaattcccagagttggtgatgccgttgtcaaaccagggtaaaagaatattttaccacgtaaaagaacaagatacaataattgactcttcaaacatgtcaatgggagactggactgtaattgccaaagatattgagaaatattataaagactttgatgcgtttattattcttcatgggactgatacattggcttattcagcatctgccctagcgtttatgatggaaggtcttggcaagactgttattcttactggtgctcaaattccaatatttgaacaaagaaatgatgcgaggagtaatttcattggtgcacttgttattgctggacattatattatacccgaggttactatatacttttcgaacaagttattacgaggatgtcgaagttccaagacaagcactagtgatctggatgcctttacgtcaccaaatctgccaccattactgaatatgggtgttgatattgatgtgaaatgggatagtatctttcgctccaaggatgcagcaaaatttggatttcgtgtgagtgataaaatggatgtaaatgttggtgtccttcgattgactcctgggattaatgctgaaattgtaagcagtttcttgagaccaccaatgaaaggtgccgttgttgaaacatttggagctggtaatgtaccttctaatcgacctgatctgctagctgcattcaaagctgcgtctgagagaggtgttattctcctgaatattacacagtgcttgaaaggatctgttaccgatgcttatgaggctggcaaagcctttgccgaaattggagttctatctggttgtgacatgacaacggaagcagctttaacgaaacttgcatacgtaattgcgaaggatcatttgtcattagatgagaaaaaggagctggtgatgtcaaatcttcgaggagaaatgacagtgcctcatgagcaacagttcagattgaaagaaggcaagtttgtcaggactgttgctacatcactgaaagttggatctgaaaaggaaatggaaaatctgcggcgagcattgctgccaatcttcctttgctgcgctgcaaaatcaggtgatacagtagctttggatgagttgctatcacaaggcgccgatgtgaataatccgtcagattatgatgggaaaagttgtcttcatattgcatgtgctgaaggaagggttgagatggtggaacatttattagaaattggtgcttctgtttatgtcaaggacaggcgaggaagggtaccactgtttgatgctgtaaggaataagaatgagaaagtaattgatgtgttgctaaaaggtggtgcacatttcttaccggatgacagagaagttgctcgtgaattatgtattgcagcatgtaacaatgatatcgcaagactgaagttattcaagaaagctaatgttgacctaaattggagcgatatggatggaagaacaccactacattttgctgtgatgcgtggtaaccttgacgctgctcgataccttatcaaagatgctggtgtagacgttgaaaaagaagatatttttgggaatactccattgtcaaatgcaaggaagctccactttcaggacgttatcgatgtcatcgttgaggcggaaggtttcaaagccagagaacttagcgaaactgtactgttaaatgacagaagtcaagattcaatgctgcttcaagatattggtcacgctgaaactgtaaggaatgacagttaataccgggtccaccgaatgagcccaccgagagcgtttactttgtaccggtacaactttggacccctcacaaagttgttaacgccgatctccagtcagtggaattttctgagcgggcggattgtagcccagagagagggggtactccctaactctcaatacggagggggtccatgccactatttctttgctgacccctaaatattaagtcgtattttttggggaccccaaagattgattcttatgttttggagaccccaaatatttttatctattgctggtgtccctaaaatgtttttgaatgatttcaatttgagcttcttgatctttctcagttttagtaataccaaaacatttatttcatgatcactgatgaatcgcagcaaattgcacgattcttcctttctccagatttgtggaccccaaatattgaattttttgttcatgttgtaattcacagaccctaaatattgctttaacgtaaaatgtcggaccccaaatattggcacggaacgcccgtattgaaagtcaattagtacccccccccctgggaattttagaccataaagggttgttcagccgtaactttcaattcaattccagagcgaaatttctcttacaaacaatagaaattccgcccgctcggaaaattccactgactggaaatcagccttaacggataatcctattgtttacactgtttctgctaatccgtgacacttttgcttcttcgatatatcaagggtgctaggacacggatgttttgattacgtatttatttaccttgttttgatctttgtcttgtttttttgtcttttttcttctctgtttccccttcaactgatgtgtgcaactgaacggtttcagcctaaatgcctcgtgttatttgaatacatcttccttgtattccggtgtcttagcgcgccttcgcagaagaaaggtttcaaaccacaatgccatactaaaatatttagtgtggcattgcggtttgaaacctttttctgcgaaggcgaagatatattcaaataacacgaggcatttaggacctgttcatatggaggcgagccagcccgcctaccgggctggaggtttttgccgagatctcaccttatccctgtttcccattcaaagtttgttgtctgttcatatgagcaggcgggctggctcggtaggtgagatctcactcaagtactgccgagatcccgcttggcgaggtccaaattttcccatatgaacactccagcccgcctgccgagacgaaaacgcctctactacgcacgcgtgggcatgcaaaacaataccaccaacgatggcacgtgaccaattccatcccggtaggcgggatggatttgccatatgaacagaatacgaaa

Transcript

scaffold141.g17.t2

ggtcaagaacgtgccaattctggttaaatttgttattgtgtcagggtaaacatcttggtgatttatccatcttatggtgtcaaatctgtctaacatgaaataagccgacgtcgaattttgctataggatcgcgggaaacttctgtcttgtgtgcgctttctgtgcgctttctttatttcagtgccaattagcagagataaaacgttaatcaattgctataacgagcgtgatggaaTTGATGAATGATGGCTTCTAGTATGCCAAGCAGCAAACTGAGTTTTCGCCAAAATGATTCTCCAAGAATTCTGGTTGTATACACTGGTGGAACAATAGGGATGATGCAGGATCCAGAAAGGGGATATGTTGTCAAAGAAAATTACTTTGTCTCATCATTGAAAAAGTTGCCAATGTTTTATGACAAAGAATTTGTGGAGCAAACTCAGACACTAACAGCTGAAGATACATTGCCAAGTGCTTACAAAGAATTCCCAGAGTTGGTGATGCCGTTGTCAAACCAGGGTAAAAGAATATTTTACCACGTAAAAGAACAAGATACAATAATTGACTCTTCAAACATGTCAATGGGAGACTGGACTGTAATTGCCAAAGATATTGAGAAATATTATAAAGACTTTGATGCGTTTATTATTCTTCATGGGACTGATACATTGGCTTATTCAGCATCTGCCCTAGCGTTTATGATGGAAGGTCTTGGCAAGACTGTTATTCTTACTGGTGCTCAAATTCCAATATTTGAACAAAGAAATGATGCGAGGAGTAATTTCATTGGTGCACTTGTTATTGCTGGACATTATATTATACCCGAGGTTACTATATACTTTTCGAACAAGTTATTACGAGGATGTCGAAGTTCCAAGACAAGCACTAGTGATCTGGATGCCTTTACGTCACCAAATCTGCCACCATTACTGAATATGGGTGTTGATATTGATGTGAAATGGGATAGTATCTTTCGCTCCAAGGATGCAGCAAAATTTGGATTTCGTGTGAGTGATAAAATGGATGTAAATGTTGGTGTCCTTCGATTGACTCCTGGGATTAATGCTGAAATTGTAAGCAGTTTCTTGAGACCACCAATGAAAGGTGCCGTTGTTGAAACATTTGGAGCTGGTAATGTACCTTCTAATCGACCTGATCTGCTAGCTGCATTCAAAGCTGCGTCTGAGAGAGGTGTTATTCTCCTGAATATTACACAGTGCTTGAAAGGATCTGTTACCGATGCTTATGAGGCTGGCAAAGCCTTTGCCGAAATTGGAGTTCTATCTGGTTGTGACATGACAACGGAAGCAGCTTTAACGAAACTTGCATACGTAATTGCGAAGGATCATTTGTCATTAGATGAGAAAAAGGAGCTGGTGATGTCAAATCTTCGAGGAGAAATGACAGTGCCTCATGAGCAACAGTTCAGATTGAAAGAAGGCAAGTTTGTCAGGACTGTTGCTACATCACTGAAAGTTGGATCTGAAAAGGAAATGGAAAATCTGCGGCGAGCATTGCTGCCAATCTTCCTTTGCTGCGCTGCAAAATCAGGTGATACAGTAGCTTTGGATGAGTTGCTATCACAAGGCGCCGATGTGAATAATCCGTCAGATTATGATGGGAAAAGTTGTCTTCATATTGCATGTGCTGAAGGAAGGGTTGAGATGGTGGAACATTTATTAGAAATTGGTGCTTCTGTTTATGTCAAGGACAGGCGAGGAAGGGTACCACTGTTTGATGCTGTAAGGAATAAGAATGAGAAAGTAATTGATGTGTTGCTAAAAGGTGGTGCACATTTCTTACCGGATGACAGAGAAGTTGCTCGTGAATTATGTATTGCAGCATGTAACAATGATATCGCAAGACTGAAGTTATTCAAGAAAGCTAATGTTGACCTAAATTGGAGCGATATGGATGGAAGAACACCACTACATTTTGCTGTGATGCGTGGTAACCTTGACGCTGCTCGATACCTTATCAAAGATGCTGGTGTAGACGTTGAAAAAGAAGATATTTTTGGGAATACTCCATTGTCAAATGCAAGGAAGCTCCACTTTCAGGACGTTATCGATGTCATCGTTGAGGCGGAAGGTTTCAAAGCCAGAGAACTTAGCGAAACTGTACTGTTAAATGACAGAAGTCAAGATTCAATGCTGCTTCAAGATATTGGTCACGCTGAAACTGTAAGGAATGACAGTTAATACCGGGTCCACCGAATGAGCCCACCGAGAGCGTTTACTTTGTACCGGTACAACTTTGGACCCCTCACAAAGTTGTTAACGCCGATCTCCAGTCAGTGGAATTTTCTGAGCGGGCGGATTGTAGCCCAGAGAGAgggggtactccctaactctcaatacggagggggtccatgccactatttctttgctgacccctaaatattaagtcgtattttttggggaccccaaagattgattcttatgttttggagaccccaaatatttttatctattgctggtgtccctaaaatgtttttgaatgatttcaatttgagcttcttgatctttctcagttttagtaataccaaaacatttatttcatgatcactgatgaatcgcagcaaattgcacgattcttcctttctccagatttgtggaccccaaatattgaattttttgttcatgttgtaattcacagaccctaaatattgctttaacgtaaaatgtcggaccccaaatattggcacggaacgcccgtattgaaagtcaattagtaccccccCCCCTGGGAATTTTAGACCATAAAGGGTTGTTCAGCCGTAACTTTCAATTCAATTCCAGAGCGAAATTTCTCTTACAAACAATAGAAATTCCGCCCGCTCGGAAAATTCCACTGACTGGAAATCAGCCTTAACGGATAATCCTATTGTTTACACTGTTTCTGCTAATCCGTGACACTTTTGCTTCTTCGATATATcaagggtgctaggacacggatgttttgattacgtatttatttaccttgttttgatctttgtcttgtttttttgtcttttttcttctctgtttccccttcaactgatgtgtgcaactgaacggtttcagcctaaatgcctcgtgttatttgaatacatcttccttgtattccggtgtcttagcgcgccttcgcagaagaaaggtttcaaaccacaatgccataCTAAAATATTTAGTGtggcattgcggtttgaaacctttttctgcgaaggcgaagatatattcaaataacacgaggcatTTAGgacctgttcatatggaggcgagccagcccgcctaccgggctggaggtttttgccgagatctcaccttatccctgtttcccattcaaagtttgttgtctgttcatatgagcaggcgggctggctcggtaggtgagatctcactcaagtactgccgagatcccgcttggcgaggtccaaattttcccatatgaacactccagcccgcctgccgagacgaaaacgcctctactacgcacgcgtgggcatgcaaaacaataccaccaacgatggcacgtgaccaattccatcccggtaggcgggatggatttgccatatgaacagaatacgaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00710 all species →	Asparaginase	Asparaginase, N-terminal	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF17763 all species →	Asparaginase_C	Glutaminase/Asparaginase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027474 all species →	Domain	L-asparaginase, N-terminal	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR041725 all species →	Family	Type I (cytosolic) L-asparaginase	Interproscan
IPR027475 all species →	Active_site	Asparaginase/glutaminase, active site 2	Interproscan
IPR006034 all species →	Family	Asparaginase/glutaminase-like	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036152 all species →	Homologous_superfamily	Asparaginase/glutaminase-like superfamily	Interproscan
IPR027473 all species →	Homologous_superfamily	L-asparaginase, C-terminal	Interproscan
IPR037152 all species →	Homologous_superfamily	L-asparaginase, N-terminal domain superfamily	Interproscan
IPR020827 all species →	Active_site	Asparaginase/glutaminase, active site 1	Interproscan
IPR040919 all species →	Domain	Asparaginase/glutaminase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11707 all species →	L-ASPARAGINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004067 all species →	Molecular Function	asparaginase activity	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13278	ASPG; 60kDa lysophospholipase	EC:3.1.1.5 EC:3.1.1.47 EC:3.5.1.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.