Gene detail

Detailed information of scaffold1412.g2.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1412:19613...48834
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1412.g2.t4

atttgcatctatttattaaaaattactgatttttaccagcaacttcacgaaaccatgctttgggtgtctttcgagactttcgtaagcattcacaaattatcaatttcttttagagtccacaatgagcatagatcttaggtcaagaactaattttttgcaaaaacattctacgggcgctcaaatcgttctgcatgggctaaactgttgaccaacgcttttccccttcgaagtcgaaagtaaacagaaatgtaaatttgattgcaggaaatctagcctaggtttttcaatcagacttggcaaagttgtagaacaactacttagctaaagatggagcgaaaaaaaaatcgacacttttgagtagttttggaggcttccaaacgcttggagaagaatactgcaatcttgtacaagtagaaagctgcaaattaaagctaccatcctcatcaaaaagaacttggatgatactcctgcattgcgttggaccatatattgcagataaagttgtatcaaagttacgggccttggttaacaattcaggaataaccaaggaagtagaggatcatgccgaaaatagaattttagtggaatttacagagcagctacacaaagcattgccaatgatcagaagggttcatttagtgttattctacatgcaaggaagtttctatgacatctcgaagagagtgactggagtgagatatgcccttatcagagactttcttaaggacaaatcagcaacagctagttatcaattccttggctttcttctttgcttgcagctcggtgtccttttccctttacaaatacatggaatatttaggctgttgttttactttttaaaatatataaatgatgatgatgatggtgatgatgatgatgatgacgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgangaaggctggttgtttgaggttcttggactggtagttggtggtgaagaaatggagcttatgcgcctgttgagaagaagagacaagacttcatccaaagagttatccgaaactgtattgtcaagaaatttatcaacagaacagaaacttttaaaatcgtgcaaagtaaagtgtccattgtgcttaggtgctattactgactccaccgctacaacttgtggtcatttattttgctggaattgtatcgtagactggatcagtacaaagttggaatgtcctgtttgcagagatgaagtcttgccctccacactgatttatctacgatactttgaaataagttaaaagagacactacctggaaaagagtatcgaagagccctgcacagcttagggttatgctctaatgtcacgtgaacttgcttttatggtcaacgttaaacttgcaacagtggatacgaaacactactctaagtcatcaataactacaatggacctattcacacagctctgggacggcgcactgcatttctggaagattgcggatacggataaactgcgatagggaatccccttcgcgatgcaaacactgaactggagttgctgttggcgaagatgttgtcggccaaaaatcgtatctaactgcaagtacatggcactaagaggaccagaaaagcttaaaacatgaccataaagacacagagttgcaaaaagtccttgaccttcctccaaacctggatttcaaggtttcaattttcctcaatttaactttttaataataactcatgaaataattatatacatcaataacaaaaaagatttccatttgtcgttcttattagatgcatcaggaccattacgtggcttgcaaaatatggctcaaaatttagaaagagaaattcaagaaatagttcacactcccagaaaaatattaacccaaaaaattgttggaccatgttttgaatgatgtcagtcaatcgttcagtggcatggccagggtaaaagagctgggattattgaaaagaaggagtctagaagttagacctccaagaaatgttttgagaacaagcctctttttggctttcctgatccaatgtttgccagtaccaaaatgtaactttccacacttttgttacagtttttcttatagttaccaccatcttcacgaaaatgttgagtaagcattcctcagttttgctcagaatgcctctctcgatccaactgacaatgccaagatttagacgaagcccagacttcgtcgtaaagacatgctacattacagtgaaattttgcatattttacaagtaatgatgtatttcttcaatttctctaccgaatttggactttatgactactgatgatgcgggcctgatgtttgttcatgaacggagcttataaactcaggaatcggagctttcgtttattacgtttccgcttagtcaatgattgtaagaaacaaacaattatcaatgctcttcccaatgttgttgatgctaccagggcaggaccagtctttctaaatcaagttagctaagaagaaagagtttcttcattttttgcgcgtgcgtttcttcttcttgacatgaaatttggcttgtgatatttgaaaattatgagcttgaaataatttaggtacatgcttgtaaaataagccacttaacctcttctctaagcaatttatcttgcacgtttctccatggttctcattcattcgtaaattttttgttcacaatactgggtgagccaaaaaatatttcccacttttgaattccaaagcaccaagagtctttggtggatttgaatgaattgaattctgctggatagccaagaaatggtagtatttttgtaatttttcttgtgcttttatgagcactggaattataggtaaatttgactttacggaacctcataactgcaaaatgcttgaaaacggcctaaaacactcaatcagatcatgaagaaacttctcttacagga

Transcript

scaffold1412.g2.t4

atttgcatctatttattaaaaattactgatttttaccagcaacttcacgaaaccatgctttgggtgtctttcgagactttcgtaagcattcacaaattatcaatttcttttagagtccacaatgagcatagatcttaggtcaagaactaattttttgcaaaaacattctacgggcgctcaaatcgttctgcatgggctaaactgttgaccaacgcttttccccttcgaagtcgaaagtaaacagaaatgtaaatttgattgcaggaaatctagcctaggtttttcaatcagacttggcaaagttgtagaacaactacttagctaaagatggagcgaaaaaaaaatcgacacttttgagtagttttggagGCTTCCAAACGCTTGGAGAAGAATACTGCAATCTTGTACAAGTAGAAAGCTGCAAATTAAAGCTACCATCCTCATCAAAAAGAACTTGGATGATACTCCTGCATTGCGTTGGACCATATATTGCAGATAAAGTTGTATCAAAGTTACGGGCCTTGGTTAACAATTCAGGAATAACCAAGGAAGTAGAGGATCATGCCGAAAATAGAATTTTAGTGGAATTTACAGAGCAGCTACACAAAGCATTGCCAATGATCAGAAGGGTTCATTTAGTGTTATTCTACATGCAAGGAAGTTTCTATGACATCTCGAAGAGAGTGACTGGAGTGAGATATGCCCTTATCAGAGACTTTCTTAAGGACAAATCAGCAACAGCTAGTTATCAATTCCTTGGCTTTCTTCTTTGCTTGCAGCTCGGTGTCCTTTTCCCTTTACAAATACATGGAATATTTAGGCTGTTGTtttactttttaaaatatataaatgatgatgatgatggtgatgatgatgatgatgacgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgangaaggctggttgtttgaggttcttggactggtagttggtggtgaagaaatggagcttatgCGCCTGTTGAGAAGAAGAGACAAGACTTCATCCAAAGAGTTATCCGAAACTGTATTGTCAAGAAATTTATCAACAGAACAGAAACTTTTAAAATCGTGCAAAGTAAAGTGTCCATTGTGCTTAGGTGCTATTACTGACTCCACCGCTACAACTTGTGGTCATTTATTTTGCTGGAATTGTATCGTAGACTGGATCAGTACAAAGTTGGAATGTCCTGTTTGCAGAGATGAAGTCTTGCCCTCCACACTGATTTATCTACGATACTTTGAAATAAGTTAAAAGAGACACTACCTGGAAAAGAGTATCGAAGAGCCCTGCACAGCTTAGGGTTATGCTCTAATGTCACGTGAACTTGCTTTTATGGTCAACGTTAAACTTGCAACAGTGGATACGAAACACTACTCTAAGTCATCAATAACTACAATGGACCTATTCACACagctctgggacggcgcactgcatttctggaagattgcggatacggataaactgcgatagggaatccccttcgcgatgcaaacactgaactggagttgctgttggcgaagatgttgtcggccaaaaatcgtatctaactgcaagtacatggcactaagaggaccagaaaagcttaaaacatgaccataaagacACagagttgcaaaaagtccttgaccttcctccaaacctggatttcaaggtttcaattttcctcaatttaactttttaataataactcatgaaataattatatacatcaataacaaaaaagatttccatttgtcgttcttattagatgcatcaggaccattacgtggcttgcaaaatatggctcaaaatttagaaagagaaattcaagaaatagttcacactcccagaaaaatattaacccaaaaaattgttggaccatgttttgaatgatgtcagtcaatcgttcagtggcatggccagggtaaaagagctgggattattgaaaagaaggagtctagaagttagacctccaagaaatgttttgagaacaagcctctttttggctttcctgatccaatgtttgccagtaccaaaatgtaactttccacacttttgttacagtttttcttatagttaccaccatcttcacgaaaatgttgagtaagcattcctcagttttgctcagaatgcctctctcgatccaactgacaatgccaagatttagacgaagcccagacttCGTCGTAAAGACATGctacattacagtgaaattttgcatattttacaagtaatgatgtatttcttcaatttctctaccgaatttggactttatgactactgatgatgcgggcctgatgtttgttcatgaacggagcttataaactcaggaatcggagctttcgtttattacgtttccgcttagtcaatgattgtaagaaacaaacaattatcaatgctcttcccaatgttgttgatgctaccagggcaggaccagtctttctaaatcaagttagctaagaagaaagagtttcttcattttttgcgcgtgcgtttcttcttcttgacatgaaatttggcttgtgatatttgaaaattatgagcttgaaataatttaggtacatgcttgtaaaataagccacttaacctcttctctaagcaatttatcttgcacgtttctccatggttctcattcattcgtaaattttttgttcACAatactgggtgagccaaaaaatatttcccacttttgaattccaaagcaccaagagtctttggtggatttgaatgaattgaattctgctggatagccaagaaatggtagtatttttgtaatttttcttgtgcttttatgagcactggaattataggtaaatttgactttacggaacctcataactgcaaaatgcttgaaaacggcctaaaacactcaatcagatcatgaagaaacttctcttacagga

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF04757 all species →	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR006845 all species →	Domain	Pex, N-terminal	Interproscan
IPR025654 all species →	Family	Peroxisome biogenesis factor 2/10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23350 all species →	PEROXISOME ASSEMBLY PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13346	PEX10; peroxin-10	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.