Gene detail

Detailed information of scaffold142.g22.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold142:193523...204614
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold142.g22.t2

cgaatctggtttgtgaaagggcctaaaagtttttcatgtcacatgttagtgaatgttcacagaagagttatttatttgctggctaaaatagggaaaacagaatagaacagagatggatcctcataagagacatttaaagaaactaaagagattacaagatttgaggaaacagaagttgaaagagaaggaaaaagtgaaaaagaaggagccaactgaagatgatgtcagtgttgagaaagtccccgaaattatcgaggaacaaaatgataagattgatccatctcaactaagtgaagatgaaaaagctatgaaagaaaaaaagaaaaaatcaaaaaaaagatccagaacaactgaaggagaagaaaattcattggtgaatgatgatacctcacccaaaaagatgaaagaaaacaatgacagtcaagaacaagagccaactgaaactgatgaaaatattgaagaaaatgatgaagagaaagaaaatgaggccaaaccttcagaatcagttttgggagagcagctacctccaacccaagaatttgcatcattgaaaggaatagtatctgaaaagacacttgatgcaataaaagaaatggagttcacaaaaatgactgaaattcaacacagaactattatgccattattagcaggaagggatttgcttggagctgctaaaacaggaagtggtaaaactctagcattcttgttgcctgctattgagttactgtacaaattgaatttcaagccaaggaatggtactggcatccttataatttcaccaacaagagaattgtcattacaaacatttggtgtgttgcgagatctcctagtccaccatcagcacacttttggtatcgtcatgggaggagctaatcgaaaagcagaggcagaaaaacttcaaaagggtgtcaacattttggtcgctactcctggaagacttttagatcatcttcagaatactcctgggttcatctacaaaagtctgcagtgtttgattattgatgaggcagatcgaattttacaaattggttttgaagaagaaatgaaacagattatgagatatttaccaaagagacgtcaaacgatgttattctcagccactcagacgaggaaagttgaagacttagcacgattatctttaaagaaagcgccattatatgttggtgttgatgatcataaagattccgcaactgtagaagggctagaacagggttacattgttgttccatcggaaaagagatttctgttgttattcacatttttgaagaagaatttaaagaaaaaagtgatggtgttcttttcatcctgcaactcagtgaaatatcattcagagttatttaattacatcgatattcctgtgcttgatattcatggtaaacagaaacaacaaaagcgaacaagcacattcttcgaattctgtactgccgattctggaattcttttatgcacagatgtagcagcaaggggtctggatataccggaagtagattggattgtccaatatgatcctccagatgatcctaagaatttccgaaaacgccctcttttgtttgttttttattcatattaaaatattacaataaatcttacattctactatacgttcctgattactatactacactacagggacgataccatggggagcgaaagactatgactaccccatggccaatatgaaaagacacgcaacgttaaactaaatacaactacactacgaacgatttaaaaactactggatactatactagattccatcccacatcagatgtcaggtcagggttgcgatcaatgcgagcacaactcgttctagttatttaaggagtatattcatcgagttggtcgaactgcacgtggtaatgaagggcgtggtcatgcgttattgtttttacttcctgaagaactgggattcttacgttatttgaaacatgcgaaggtgacacttaacgagtatgacttttcaaaggcaaagatttgcaatattcaatctcagctggagaaattaatttcaaagaattactatttgcacaaatcagccaaagacgggtacagatcataccttcaagcgtatgcctcacatcagcatcgaaatatcttcgacgtgaatagaatcgatttacagaaagtggctttatccttcggattcagtgtgcctcccagtgtcaatctcaatgtttatgcgagcaaaggagagaaaatacagaaaaggggtggcggtggaggatttggattccagaacaaaaaacagtttcaaaagtcaaaaaatttcagagcaaagaaagcaacagataagagacaattttctagataacatatctttttttgtttacttgtataggtatcatacattctgtttacccaggaatttaaggattacaagccgatatgctacgtaaaaaaggctcaacaactggcttgcagaactttcgaaataagggtcgagaggaaaatctaaatctatcctgacgatatcgatcttcagaagtaaagtttctcaggatga

Transcript

scaffold142.g22.t2

CGAATCTGGTTTGTGAAAGGGCCTAAAAGTTTTTCATGTCACATGTTAGTGAATGTTCACAGAAGAGTTATTTATTTGCTGGCTAAAATAGGGAAAACAGAATAGAACAGAGATGGATCCTCATAAGAGACATTTAAAGAAACTAAAGAGATTACAAGATTTGAGgaaacagaagttgaaagagaaggaaaaagtgaaaaagaaggagCCAACTGAAGATGATGTCAGTGTTGAGAAAGTCCCCGAAATTATCGAGGAACAAAATGATAAGATTGATCCATCTCAACTAAGTGAAGATGAAAAAGCTATGaaagaaaaaaagaaaaaatcaaaaaaaaGATCCAGAACAACTGAAGGAGAAGAAAATTCATTGGTGAATGATGATACCTCACCCAAAAAGATGAAAGAAAACAATGACAGTCAAGAACAAGAGCCAACTGAAACTGATGAAAATATTGAAGAAAATGATGAAGAGAAAGAAAATGAGGCCAAACCTTCAGAATCAGTTTTGGGAGAGCAGCTACCTCCAACCCAAGAATTTGCATCATTGAAAGGAATAGTATCTGAAAAGACACTTGATGCAATAAAAGAAATGGAGTTCACAAAAATGACTGAAATTCAACACAGAACTATTATGCCATTATTAGCAGGAAGGGATTTGCTTGGAGCTGCTAAAACAGGAAGTGGTAAAACTCTAGCATTCTTGTTGCCTGCTATTGAGTTACTGTACAAATTGAATTTCAAGCCAAGGAATGGTACTGGCATCCTTATAATTTCACCAACAAGAGAATTGTCATTACAAACATTTGGTGTGTTGCGAGATCTCCTAGTCCACCATCAGCACACTTTTGGTATCGTCATGGGAGGAGCTAATCGAAAAGCAGAGGCAGAAAAACTTCAAAAGGGTGTCAACATTTTGGTCGCTACTCCTGGAAGACTTTTAGATCATCTTCAGAATACTCCTGGGTTCATCTACAAAAGTCTGCAGTGTTTGATTATTGATGAGGCAGATCGAATTTTACAAATTGGTTTTGAAGAAGAAATGAAACAGATTATGAGATATTTACCAAAGAGACGTCAAACGATGTTATTCTCAGCCACTCAGACGAGGAAAGTTGAAGACTTAGCACGATTATCTTTAAAGAAAGCGCCATTATATGTTGGTGTTGATGATCATAAAGATTCCGCAACTGTAGAAGGGCTAGAACAGGGTTACATTGTTGTTCCATCGGAAAAGAGATTTCTGTTGTTATTCACATTTTTGAAGAAGAATTTAAAGAAAAAAGTGATGGTGTTCTTTTCATCCTGCAACTCAGTGAAATATCATTCAGAGTTATTTAATTACATCGATATTCCTGTGCTTGATATTCATGGTAAACAGAAACAACAAAAGCGAACAAGCACATTCTTCGAATTCTGTACTGCCGATTCTGGAATTCTTTTATGCACAGATGTAGCAGCAAGGGGTCTGGATATACCGGAAGTAGATTGGATTGTCCAATATGATCCTCCAGATGATCCTAAGAATTTCCGAAAACGCCCTCTTTTGtttgttttttattcatattaaaatattacaataaatcttacattctactatacgttcctgattactatactacactacagggacgataccatggggagcgaaagactatgactaccccatggccaatatgaaaagacacgcaacgttaaactaaatacaactacactacgaacgatttaaaaactactggatactatactagattccatcccacatcagatgtcaggtcagggttgcgatcaatgcgagcacaactcgttctagttatttaagGAGTATATTCATCGAGTTGGTCGAACTGCACGTGGTAATGAAGGGCGTGGTCATGCGTTATTGTTTTTACTTCCTGAAGAACTGGGATTCTTACGTTATTTGAAACATGCGAAGGTGACACTTAACGAGTATGACTTTTCAAAGGCAAAGATTTGCAATATTCAATCTCAGCTGGAGAAATTAATTTCAAAGAATTACTATTTGCACAAATCAGCCAAAGACGGGTACAGATCATACCTTCAAGCGTATGCCTCACATCAGCATCGAAATATCTTCGACGTGAATAGAATCGATTTACAGAAAGTGGCTTTATCCTTCGGATTCAGTGTGCCTCCCAGTGTCAATCTCAATGTTTATGCGAGCAAAGGAGAGAAAATACAGAAAAGGGGTGGCGGTGGAGGATTTGGATTCCAGAACAAAAAACAGTTTCAAAAGTCAAAAAATTTCAGAGCAAAGAAAGCAACAGATAAGAGACAATTTTCTAGATAACATATCTTTTTTTGTTTACTTGTATAGGTATCATACATTCTGTTTACCCAGGAATTTAAGGATTACAAGCCGATATGCTACGTAAAAAAGGCTCAACAACTGGCTTGCAGAACTTTCGAAATAAGGGTCGAGAGGAAAATCTAAATCTATCCTGACGATATCGATCTTCAGAAGTAAAGTTTCTCAGGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR044773 all species →	Domain	DDX18/Has1, DEAD-box helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13179	DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.