Gene detail

Detailed information of scaffold1454.g1.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1454:31619...39164
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1454.g1.t1

gagagtggcgcagcaaatttcattccttatttatccatcacaacaatttatggaagaaaactgttgcggaaaagaggaaaaattagctgaaaacatcgaggcagtaaataagcggaaagaaacctttgccctgcggagtagaagaaaccattacagtgctgatattgtcgcgaacaagagtagttttcatagaagaagacatagcagtgtcaaaggaaaccttcatagcgaaaattaggaagcctttacaatgctcgcaagcatgagaacaatatgctttttagtgttttcgctaattctacttaacttagcagttagcaaacgagatcagtttctaacatatccgacaaatatcgaggagatgaagaagctattgaaaatggatcgaccaaccattggcgtcctgtcgttattcgttgctggaaggcaaattctagaagaagtgccgcaagcagaaaattgcagttacatcgctgcatcgtttgtccggtttgtcgagacagccggaggccgggttgttccgataaaggaaagtctgggtgataaagaagtgaagaaacttctcgaaagtgtgaatggtgcgatcgttccaggtggtgatatcgctgttttggatagtggttataacaagatttctgaaatgatctatcgatattctattaatcagaaaaggaaaggaattatttggccagtattagcaatcaacagaggtgcacagcgattcacccaactgacagccggaaaagacatcacaataccatcggacagtatgaacctgagcttaccacttcacttcaaacctggcgccaaaaagagcagactaatgaaacatgcagctgcaggaatctggaaaacactcgctcaacgcccaatgacctttaatgttcatgcaagagcaattgcagacgagatattcaccaactcatcagagctcatgaatttctatagaattatttcgacaaataaagataggaatggaacaattttcgtttcaacatttgaggccaagcactacccaatctattgcttccaatggcagcccgagaaaatcatgtttgtttggaaccctgttttgtcactggaccactctcctgatgctattcgtgtagctcaatatctcgctaactatttcatggttgaagcaagaatgaacgcgcagagatttaccaccagggaggaggaagaaccaaggctgatatttcggcgtaaaccagtgtatataggaaacatcaacgaaagcccttacgagcagatttatttgtttaaaaatgcaaatgggacaaagtttggagaacatttgcctgaacattattcgtgaaaaagaacattgtggtaataacactggatgttattaagcttttaacattagacaaatacagtagagggcttaaatctttcaaaacttcaaaaggcgggtgtaaaattgcatgaaattttgtttgaattgaatggcttaaaaggaacgtatgttactttgctgtaaatccgccatggaaatttttatatattttgattttttccaaaattttcatttttgatggaagacttcatggagaattttgaaaattaaaatcttaatagaggaaaaatgatgcaatcttcaagaaaaccataatttatgaagatctacaatatggtggcaggccaaaatctttcgctcttctggtttaggatttagaaatcccaacgaacgatacttagggcaagtgtacggtaaatgaggatgttcacaaagaaggtccacaagtttttgtttttttttcagataagccttttgaattaggagagaactgcagaaatgtaaaaacactgaatatataaataaaaaccaacgtttgcatatttacattatttacgccaactgttcttcgattcaaaataaaatctcaccgttctgtggttataactccctcataactcagagattccttgacgcagggcaataaacaaagtgtaaaatctaagtgggaatcggagagatggcactataatataacattatatactataatatttcgcaattcttttgatcaccactatttccacaagactcgacatcaggcaacgactttttccaggatatcaaaatggctttctcgtcacttgaatcagatgagccacttttcatcaaaatattccaataaataaaataaatgaaaacaaactgatagataatgaaacgaacagaccacttttcagacacagtgttcaacattttttcaagcaattgctgtgcttacaagaattataggtacacagaaagaacgcttttggctatcatatccataatttatcaactcttaaagaggtaaataagcaactattcacatattctggaaaccactttcagtacatctttacatttngattcttaagtccaaataaatacccatcatcaggcccatgatgtttttcatcaaataatgtcacttgcgcgaaatcgatcattcgtacaacaaatcttgggtcctgggcttcatcgacagctccatcatacatgagtagtaacgaacttccaaaaaatctgcacgtttcaaggtgttttattgtctgatataaatctatgagtgatttcacgatggggtggataatgtcgagaaattgtccattattcaggaatgaccgcagacagtttttgaatccggctggatctaggttgcgaccagtgtatttgtcggtgtatgtgtacgtcgatgttgctgggttgtatacctgaaatggatttcaataccgagtgaatcccgggcgaatccatggctagttagatgctgcagttgagcttgattcagcgtaggttccaaatctttaaaacggctggtgtaaaactgagtgacctatttcttgaaactgaatgacttcaaagaaactttagctatttctctaattgtaccgttggacttttaggaaatcttcaatattttcagaattagggtgattttcttctttttcaagaattcaagaaaaaatttaaaaaaaa

Transcript

scaffold1454.g1.t1

GAGAGTGGCGCAGCAAATTTCATTCCTTATTTATCCATCACAACAATTTATGGAAGAAAACTGTTGCGGAAAAGAGGAAAAATTAGCTGAAAACATCGAGGCAGTAAATAAGCGGAAAGAAACCTTTGCCCTGCGGAGTAGAAGAAACCATTACAGTGCTGATATTGTCGCGAACAAGAGTAGTTTTCATAGAAGAAGACATAGCAGTGTCAAAGGAAACCTTCATAGCGAAAATTAGGAAGCCTTTACAATGCTCGCAAGCATGAGAACAATATGCTTTTTAGTGTTTTCGCTAATTCTACTTAACTTAGCAGTTAGCAAACGAGATCAGTTTCTAACATATCCGACAAATATCGAGGAGATGAAGAAGCTATTGAAAATGGATCGACCAACCATTGGCGTCCTGTCGTTATTCGTTGCTGGAAGGCAAATTCTAGAAGAAGTGCCGCAAGCAGAAAATTGCAGTTACATCGCTGCATCGTTTGTCCGGTTTGTCGAGACAGCCGGAGGCCGGGTTGTTCCGATAAAGGAAAGTCTGGGTGATAAAGAAGTGAAGAAACTTCTCGAAAGTGTGAATGGTGCGATCGTTCCAGGTGGTGATATCGCTGTTTTGGATAGTGGTTATAACAAGATTTCTGAAATGATCTATCGATATTCTATTAATCAGAAAAGGAAAGGAATTATTTGGCCAGTATTAGCAATCAACAGAGGTGCACAGCGATTCACCCAACTGACAGCCGGAAAAGACATCACAATACCATCGGACAGTATGAACCTGAGCTTACCACTTCACTTCAAACCTGGCGCCAAAAAGAGCAGACTAATGAAACATGCAGCTGCAGGAATCTGGAAAACACTCGCTCAACGCCCAATGACCTTTAATGTTCATGCAAGAGCAATTGCAGACGAGATATTCACCAACTCATCAGAGCTCATGAATTTCTATAGAATTATTTCGACAAATAAAGATAGGAATGGAACAATTTTCGTTTCAACATTTGAGGCCAAGCACTACCCAATCTATTGCTTCCAATGGCAGCCCGAGAAAATCATGTTTGTTTGGAACCCTGTTTTGTCACTGGACCACTCTCCTGATGCTATTCGTGTAGCTCAATATCTCGCTAACTATTTCATGGTTGAAGCAAGAATGAACGCGCAGAGATTTACCACCAGGGAGGAGGAAGAACCAAGGCTGATATTTCGGCGTAAACCAGTGTATATAGGAAACATCAACGAAAGCCCTTACGAGCAGATTTATTTGTTTAAAAATGCAAATGGGACAAAGTTTGGAGAACATTTGCCTGAACATTATTCGTGAAAAAGAACATTGTGGTAATAACACTGGATGTTATTAAGCTTTTAACATTAGACAAATACAGTAGagggcttaaatctttcaaaacttcaaaaggcgggtgtaaaattgcatgaaattttgtttgaattgaatggcttaaaaggaacgtatgttactttgctgtaaatccgccatggaaatttttatatattttgattttttccaaaattttcatttttgatggaagacttcatggagaattttgaaaattaaaatcttaatagaggaaaaatgatgcaatcttcaagaaaaccataatttatgaagatctacaatatggtggcaggccaaaatctttcgctcttctggtttaggatttagaaatCCCAACGAACGATACTTAGGGCAAGTGTACGGTAAATGAGGATGTTCACAAAGAAGGTCCACAAGTTTTTGTTTTTTTTTCAGATAAGCCTTTTGAATTAGGAGAGAACTGCAGAAATGTAAAAACACTGAATATATAAATAAAAACCAACGTTTGCATATTTACATTATTTACGCCAACTGTTCTTCGATTCAAAATAAAATCTCACCGTTCTGTGGTTATAACTCCCTCATAACTCAGAGATTCCTTGACGCAGGGCAATAAACAAAGTGTAAAATCTAAGTGGGAATCGGAGAGATGGCACtataatataacattatatactataatatTTCGCAATTCTTTTGATCACCACTATTTCCACAAGACTCGACATCAGGCAACGACTTTTTCCAGGATATCAAAATGGCTTTCTCGTCACTTGAATCAGATGAGCCACTTTTCATCAAAATATTCCaataaataaaataaatgaaaacaaactgatagataatgaaacgaaCAGACCACTTTTCAGACACAGTGTTCAACATTTTTTCAAGCAATTGCTGTGCTTACAAGAATTATAGGTACACAGAAAGAACGCTTTTGGCTATCATATCCATAATTTATCAACTCTTAAAGAGGTAAATAAGCAACTATTCACATATTCTGGAAACCACTTTCAGTACATCTTTACATTTNGATTCTTAAGTCCAAATAAATACCCATCATCAGGCCCATGATGTTTTTCATCAAATAATGTCACTTGCGCGAAATCGATCATTCGTACAACAAATCTTGGGTCCTGGGCTTCATCGACAGCTCCATCATACATGAGTAGTAACGAACTTCCAAAAAATCTGCACGTTTCAAGGTGTTTTATTGTCTGATATAAATCTATGAGTGATTTCACGATGGGGTGGATAATGTCGAGAAATTGTCCATTATTCAGGAATGACCGCAGACAGTTTTTGAATCCGGCTGGATCTAGGTTGCGACCAGTGTATTTGTCGGTGTATGTGTACGTCGATGTTGCTGGGTTGTATACCTGAAATGGATTTCAATACCGAGTGAATCCCGGGCGAATCCATGGCTAGTTAGATGCTGCAGTTGAGCTTGATTcagcgtaggttccaaatctttaaaacggctggtgtaaaactgagtgacctatttcttgaaactgaatgacttcaaagaaactttagctatttctctaattgtaccgttggacttttaggaaatcttcaatattttcagaattagggtgattttcttctttttcaagaattcaagaaaaaatttaaaaaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07722 all species →	Peptidase_C26	Peptidase C26	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015527 all species →	Family	Peptidase C26, gamma-glutamyl hydrolase	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR011697 all species →	Family	Peptidase C26	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11315 all species →	PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0008242 all species →	Molecular Function	omega peptidase activity	Interproscan
GO:0034722 all species →	Molecular Function	gamma-glutamyl-peptidase activity	Interproscan
GO:0046900 all species →	Biological Process	tetrahydrofolylpolyglutamate metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01307	GGH; gamma-glutamyl hydrolase	EC:3.4.19.9	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.