Gene detail

Detailed information of scaffold146.g16.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold146:198567...206874
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold146.g16.t2

gttacggttttaattttagatttgcttttcctaaaggatagttaatactttttctaggtacatgaaagctggcactttgcttaagaactacacggaagttttggtaattcttacaagattaagacaactttgttgtcatccgaagctctgcacagctgctcttgaagccgctgcgaaggaagccgtagaaaactcgacgcctgaagaactccgaaagagactaatagcaatcctagcaatgttgatatcatcaggagctgacgaagaatgcccaatatgtttggactccctgaacgcaccagtcataacccattgtgctcatatttactgcaagaattgtattgaaaacgtgatcaagcaaactggctcaacgtgcccgttatgtcgaggaattatcgcattgaataaattggtggaagctcctgcagatcagcaagatgaagctgtcgaaagtagcgactggaattctagtgctaaggttgacgcattgctgaacgccttagagaatcaacgcaaagctgacccaacaattaaatgcctggttgtatcccaattcacttcattcttgaaattactgagacaacctttagaaggcagaggattcaattacgtatcccttgatggatctctctcccaagagaagcgagcacaggccataagagaattctcagacccaaagccaggctctcctacgatatttcttctatcattgagagctggaggtgttgggttgaatttgaccgcagcaagcagagtttacttgatggacccggcctggaacccagcagcagaagaccaatgttttgacagatgtcatcgacttggccaaacaaaagctgttgaaatacacaagttcattgtcaaagattcaattgaagaacgaatgctcgagttacaagaaaagaaacggaagttgatgaccggagcatttgaaaaacagaaggctgatgagatgcgacaacaacgaatcaatgatgtcacaaatctgatgagcctaaactcgtgaatcagtcgaaccatttatggtcgaactgaaagacaaaagtgagacgaaactgcttacatcctgttgttgttcttgcgtacagctatcaaatcacagcataggaatcaagtcaagtcaaatctttgaaaaggagattgggcgattggttgatgcatctttcctttgatttaacagcttgaaaggaagttcaggtactaagttataagtggcaatttttgatatcttgagtatgttcatgattatttcgctttttttattgagggaattcaggaaaagttttgcaacaaattgagatcgttgtgaatcttatattaatggaggaaagatgttactatcttcaagaaagtcatggtttatagaggtttctaatatggcggtaagcagaaatttgcagcttttgtggtttacgattcagcaatttgatgacgtcacagccagaaaactacaagggcagattttgtaatacaatagcaacagttgcgtttgattgacacctcaattcaaagcgattagcgattgcagacaaaggaaattctctcaaccagtaattcaaaacaaacaaagccgcaaaattttctccgatactagaaggggaaactctcgccttgtgcaagcgaattgtggtttttaaaataagttacgtgcttaataacgaaagaagaagggtaaatctaaagttctgtctggcgaattttgtttatttcattcaggggctgttttgtaatagtttaatttaagccctaaatacgcgagaattacaatgccttttgctcagcttctgaatcaaataaacaagatccgccagacaggactttagatttacccttcttctttcaccataagcacataacttctcttaaaaaccacctttcgcttgcacaagacgagagtttgccctgctagtttcggggaaacttttgcggctttgtttgtttcgcattactggttgagagaatttcctttgtctgcagtcgctaatcgctttgaattgtggtgtcaatcaaacgcaactgttgctattgtattacaaaatctgcccttgttccagaaaactgcttgataccaagaagctgctgtaattgtgagaataatagatttatcaaaacttacatacatacatacatacatacattatttatttaacaatgcaggtcatctaaatggcagctttcgctgatgtggacctgctaattaagtaaaggttaaaagttttaaatagcttagattaataaatatttctaatttacatgaatggtttcttaagtttaaaagtagataaaatttgagtcagtatacgatatggtggatgcttgtccaaaggagatgctatctaatattttgctattttctgatagctttcttttaaatgtttcataattttcctgaatcgttattgatgggggcagtctgttccaaattaacgctgccctatgcttgaaacaatttctgccaacatttgtttttgatcgggtgagatccactttgcaactgttcctagatgatctctgagattttgtttttgtcactaaatctttcagggcattaggacacttgttgttgtatattttgtgagtcaggcatgctacacgtcttttatagatatagtcaacagttttccaatttgctttttcaagaacgttatctgcaggtgttgatttaggtagcttgtgtattatctttgctgctctcttatgcactgtctcaattggttccaaggatggtcctgttccccaaatagccat

Transcript

scaffold146.g16.t2

GTTACGGTTTTAATTTTAGATTTGCTTTTCCTAAAGGATAGTTAATACTTTTTCTAGGTACATGAAAGCTGGCACTTTGCTTAAGAACTACACGGAAGTTTTGGTAATTCTTACAAGATTAAGACAACTTTGTTGTCATCCGAAGCTCTGCACAGCTGCTCTTGAAGCCGCTGCGAAGGAAGCCGTAGAAAACTCGACGCCTGAAGAACTCCGAAAGAGACTAATAGCAATCCTAGCAATGTTGATATCATCAGGAGCTGACGAAGAATGCCCAATATGTTTGGACTCCCTGAACGCACCAGTCATAACCCATTGTGCTCATATTTACTGCAAGAATTGTATTGAAAACGTGATCAAGCAAACTGGCTCAACGTGCCCGTTATGTCGAGGAATTATCGCATTGAATAAATTGGTGGAAGCTCCTGCAGATCAGCAAGATGAAGCTGTCGAAAGTAGCGACTGGAATTCTAGTGCTAAGGTTGACGCATTGCTGAACGCCTTAGAGAATCAACGCAAAGCTGACCCAACAATTAAATGCCTGGTTGTATCCCAATTCACTTCATTCTTGAAATTACTGAGACAACCTTTAGAAGGCAGAGGATTCAATTACGTATCCCTTGATGGATCTCTCTCCCAAGAGAAGCGAGCACAGGCCATAAGAGAATTCTCAGACCCAAAGCCAGGCTCTCCTACGATATTTCTTCTATCATTGAGAGCTGGAGGTGTTGGGTTGAATTTGACCGCAGCAAGCAGAGTTTACTTGATGGACCCGGCCTGGAACCCAGCAGCAGAAGACCAATGTTTTGACAGATGTCATCGACTTGGCCAAACAAAAGCTGTTGAAATACACAAGTTCATTGTCAAAGATTCAATTGAAGAACGAATGCTCGAGTTACAAGAAAAGAAACGGAAGTTGATGACCGGAGCATTTGAAAAACAGAAGGCTGATGAGATGCGACAACAACGAATCAATGATGTCACAAATCTGATGAGCCTAAACTCGTGAATCAGTCGAACCATTTATGGTCGAACTGAAAGACAAAAGTGAGACGAAACTGCTTACATCCTGTTGTTGTTCTTGCGTACAGCTATCAAATCACagcataggaatcaagtcaagtcaaatctttgaaaaggagattgggcgattggttgatgcatctttcctttgatttaacagcttgaaaggaagttcaggtactaagttataagtggcaatttttgatatcttgagtatgttcatgattatttcgctttttttattgagggaattcaggaaaagttttgcaacaaattgagatcgttgtgaatcttatattaatggaggaaagatgttactatcttcaagaaagtcatggtttatagaggtttctaatatggcggtaagcagaaatttgcagcttttgtggtttacgattcagcaatttgatgacgtcacagccAGAAAACTacaagggcagattttgtaatacaatagcaacagttgcgtttgattgacacctcaattcaaagcgattagcgattgcagacaaaggaaattctctcaaccagtaattcaaaacaaacaaagccgcaaaattttctccgatactagaaggggaaactctcgccttgtgcaagcgaattgtggtttttaaaataagttacgtgcttaataacgaaagaagaagggtaaatctaaagttctgtctggcgaattttgtttatttcattcaggggctgttttgtaatagtttaatttaagccctaaatacgcgagaattacaatgccttttgctcagcttctgaatcaaataaacaagatccgccagacaggactttagatttacccttcttctttcaccataagcacataacttctcttaaaaaccacctttcgcttgcacaagacgagagtttgccctgctagtttcggggaaacttttgcggctttgtttgtttcgcattactggttgagagaatttcctttgtctgcagtcgctaatcgctttgaattgtggtgtcaatcaaacgcaactgttgctattgtattacaaaatctgcccttgttCCAGAAAACTGCTTGATACCAAGAAGCTGCTGTAATTGTGAGAATAATAGATTTATCAAAacttacatacatacatacatacatacattatttatttaacaatgcaggtcatctaaatggcagctttcgctgatgtggacctgctaattaagtaaaggttaaaagttttaaatagcttagattaataaatatttctaatttacatgaatggtttcttaagtttaaaagtagataaaatttgagtcagtatacgatatggtggatgcttgtccaaaggagatgctatctaatattttgctattttCTGATAGCTTTCTTTTAAATGTTTCATAATTTTCCTGAATCGTTATTGATGGGGGCAGTCTGTTCCAAATTAACGCTGCCCTATGCTTGAAACAATTTCTGCCAACATTTGTTTTTGATCGGGTGAGATCCACTTTGCAACTGTTCCTAGATGATCTCTGAGATTTTGTTTTTGTCACTAAATCTTTCAGGGCATTAGGACACTTGTTGTTGTATATTTTGTGAGTCAGGCATGCTACACGTCTTTTATAGATATAGTCAACAGTTTTCCAATTTGCTTTTTCAAGAACGTTATCTGCAGGTGTTGATTTAGGTAGCTTGTGTATTATCTTTGCTGCTCTCTTATGCACTGTCTCAATTGGTTCCAAGGATGGTCCTGTTCCCCAAATAGCCAT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR050628 all species →	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626 all species →	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold146.g16.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.