Gene detail

Detailed information of scaffold146.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold146:40532...54664
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold146.g2.t1

tcttatcatctgttttgacaatttattgttaaatttgtacagggtggcccagaacttggtggaatctacatcaaatcatttctccctggtggatctgcagaagcgaatggacggatagctatcggtgataggttagtggagattggcagcgtcaatgttgaaagcttcaccagaaaacaggtgcgtaaattgaaatttttgatcaatgtctctttgatcatctttcaccgtatcacataatagttccatgatcctgtaaagctcaggtaatatcagacagaatctagtatattatatcctttatccattagctttctaatcgttcgtagtgtacagttagttgcatgtaggttaacgttatatgtctttatgtttttggccatggggtagtcattgtttttcgctccccctggtatcgttcccgtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttcaaatccggtaagattccgatgaatgatgttgtgcattatattgatccggagagagttcttgcttctaatccggtaagattcccatgaatgatgttgtgcattgtattgatccggagagagttcttgcttctaatccggaaagattcccatgaatgatgttgtgcattatattgatccggagagagttctcgcttcaaatccgaacttcatatcagtttcattgtacaagaagcaagagagtcttggttttagtattacgggaggtcatgagctcggtggtattttcatcagatctttaaacatgaatggcccagctgctattgatcgacgattagaagttggtgacaggattgttgcaatcaataacatcagtctagagacagcgacaaggccaaaagccttggatgtaatacgcacggcagcctctcctgttagactaatcgtcgaaaaatgcacacccccagagagaagagatccatccatgatgccaatggataacacgaagatccatcgctcagactccatcaaatcattgccaactggctattcaaaaaacgaccggttgcccagtacaatccgcggactggcactatccgttcaagatattccaggagcaggattgtcgaacaataatgcgaggcaatatgattacgatcggaccgatgcgcagcagcagatacaacagcaacaacaacaacaacaacatcatcaacatcatcaacaacaacaacagcaagacaatagtcagttctacaaccaaccagttacaagcagtagtcatggtaatgagggaatgaatttgaacaggaggtccatgctgcctgaagtattcgttgttgatctgccgaagattaatggaagttttggacttggccttgcgactgattatatgttcgtaggttatcgctattgataggctgatggacgctataactacgactcatggacttacgcttccagaaacggacatggcctaaatcacctgctattttttcctcaaaaccaccgaccctaaaataccgcaaaaagtggttatcctggagtgctacactgcaaaacaaactatcagtacttagatgaatgtttcttcaaactattaaggcaaacaaatcctacccataagtgatattttggttgtttgggggcgcaaaagatctcgtaaattcgctcgttactttgagattttgaacgttggagcagttcagtggaacgcgttgttcgaattcgtttgtttgcctttggcgggaagtttaaattgaagaagaatcagccaatcccttcaagttatttcaagtcttgcatcctgattggtccaggaaaaaatatgttcctggcgagaatttttttgccgttttgagaagagttagtccataaggcccttgactggagcgacaacaacaacattaattcacttcaattagatgagcgtaagttgagggtccttatgtagtgaggctagtaaataacatgagctgagatcttgattattttcaaaatggcggcatctattaaatttgagaattagagtgtttttcttctttttcaagaattcaagaaaaattttcaaaaaaacttaaaaccatcgtaatttctaaacagtttgacgtaacatgaaataatttcgaagggaaccatagttcataaatgcctacaatgtggtgtcaagcaaaagtctgtcactcatctggtttatgatttagaaatttgatgacgtcacatcctcaaatgagttgaaatgtaagatacgctgtaatttccaaacattttcaacatttctgaaaagtccaacagtagaattatggataagtatctaaagtttctttcaagccattcaatcagaagaaataggtccttgaagtttacacccacctttttacgccgagataaagatttggaacctatgctaaggcatggtaatgatgctcaactgccaaaagtacgaactccgtcctttggagttgagtccattacttaccttggaaataaactgtggcagcatttaccgcaagaaataaaacaatctaacagccttcctatgttcaaaaaacgaattagatgctggaatggtggaacatgcaactgtaggctttgcaaagtatatatcccgcaggttgggtttctaacatgataggttttaactctgatttgtcctgtaatatatattaatactttta

Transcript

scaffold146.g2.t1

TCTTATCATCTGTTTTGACAATTTATTGTTAAATTTGTACAGGGTGGCCCAGAACTTGGTGGAATCTACATCAAATCATTTCTCCCTGGTGGATCTGCAGAAGCGAATGGACGGATAGCTATCGGTGATAGGTTAGTGGAGATTGGCAGCGTCAATGTTGAAAGCTTCACCAGAAAACAGGTGCGTAAATTGAAATTTTTGATCAATGTCTCTTTGATCATCTTTCACCGTATCACATAATAGTTCCATGATCCTGTAAAGCTCAGGtaatatcagacagaatctagtatattatatcctttatccattagctttctaatcgttcgtagtgtacagttagttgcatgtaggttaacgttatatgtctttatgtttttggccatggggtagtcattgtttttcgctccccctggtatcgttcccgtagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCAAATCCGGTAAGATTCCGATGAATGATGTTGTGCATTATATTGATCCGGAGAGAGTTCTTGCTTCTAATCCGGTAAGATTCCCATGAATGATGTTGTGCATTGTATTGATCCGGAGAGAGTTCTTGCTTCTAATCCGGAAAGATTCCCATGAATGATGTTGTGCATTATATTGATCCGGAGAGAGTTCTCGCTTCAAATCCGAACTTCATATCAGTTTCATTGTACAAGAAGCAAGAGAGTCTTGGTTTTAGTATTACGGGAGGTCATGAGCTCGGTGGTATTTTCATCAGATCTTTAAACATGAATGGCCCAGCTGCTATTGATCGACGATTAGAAGTTGGTGACAGGATTGTTGCAATCAATAACATCAGTCTAGAGACAGCGACAAGGCCAAAAGCCTTGGATGTAATACGCACGGCAGCCTCTCCTGTTAGACTAATCGTCGAAAAATGCACACCCCCAGAGAGAAGAGATCCATCCATGATGCCAATGGATAACACGAAGATCCATCGCTCAGACTCCATCAAATCATTGCCAACTGGCTATTCAAAAAACGACCGGTTGCCCAGTACAATCCGCGGACTGGCACTATCCGTTCAAGATATTCCAGGAGCAGGATTGTCGAACAATAATGCGAGGCAATATGATTACGATCGGACCGATGCGCAGCAGCAGATacaacagcaacaacaacaacaacaacatcatcaacatcatcaacaacaacaacaGCAAGACAATAGTCAGTTCTACAACCAACCAGTTACAAGCAGTAGTCATGGTAATGAGGGAATGAATTTGAACAGGAGGTCCATGCTGCCTGAAGTATTCGTTGTTGATCTGCCGAAGATTAATGGAAGTTTTGGACTTGGCCTTGCGactgattatatgttcgtaggttatcgctattgataggctgatggacgctataactacgactcatggacttacgcttccagaaacggacatggcctaaatcacctgctattttttcctcaaaaccaccgaccctaaaataccgcaaaaagtggttatcctggagtgctacactgcaaaacaaactatcagtacttagatgaatgtttcttcaaactattaaggcaaacaaatcctacccataagtgatattttggttgtttgggggcgcaaaagatctcgtaaattcgctcgttactttgagattttgaacgttggagcagttcagtggaacgcgttgttcgaattcgtttgtttgcctttggcgggaagtttaaattgaagaagaatcagccaatcccttcaagttatttcaagtcttgcatcctgattggtccaggaaaaaatatgttcctggcgagaatttttttgccgttttgagaagagttagtccataaggcccttgactggagcgacaacaacaacattaattcacttcaattagatgagcgtaagttgagggtccttatgtagtgaggctaGTAAATAACATGAgctgagatcttgattattttcaaaatggcggcatctattaaatttgagaattagagtgtttttcttctttttcaagaattcaagaaaaattttcaaaaaaacttaaaaccatcgtaatttctaaacagtttgacgtaacatgaaataatttcgaagggaaccatagttcataaatgcctacaatgtggtgtcaagcaaaagtctgtcactcatctggtttatgatttagaaatttgatgacgtcacatcctcaaatgagttgaaatgtaagatacgctgtaatttccaaacattttcaacatttctgaaaagtccaacagtagaattatggataagtatctaaagtttctttcaagccattcaatcagaagaaataggtccttgaagtttacacccacctttttacgccgagataaagatttggaacctatgctaaggcatggtaatgatgctcaactgccaaaagtacgaactccgtcctttggagttgagtccattacttaccttggaaataaactgtggcagcatttaccgcaagaaataaaacaatctaacagccttcctatgttcaaaaaacgaattagatgctggaatggtggaacatgcaactgtaggctttgcaaagtatatatcccgcaggttgggtttctaacatgataggttttaactctgatttgtcctgtaatatatattaatactttta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050614 all species →	Family	Synaptic Scaffolding LAP/MAGUK Families	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23119 all species →	DISCS LARGE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009790 all species →	Biological Process	embryo development	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0097120 all species →	Biological Process	receptor localization to synapse	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold146.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.