Gene detail

Detailed information of scaffold146.g39.t1 in Morbakka virulenta

Genomic Location: scaffold146:1193785...1236985
NR annotation: XP_022793021.1, H/ACA ribonucleoprotein complex subunit 4-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold146.g39.t1

GAACTTGTTTTGTTGCTGGAAGAGAGCAGCGTGTTGTTGATCAAAACCACTCAAAACATATTGAAGATATTGAAAATATCTATTTAAGTGATCTTGTGCAAGTTTGACATAATGGAACAGGAGGAAGTTGTGAAAAAGAAGAGCAAAAAATCAAAGAAAGCAGACTTGGGTAATGCTACTGTTGATACTTCTGTAGGGGAACAGCAAAGCAGTGAGGATTTTATCATTAAGCCATCAAACCAAAGTGCCAAGCTAGATACATCTCAATGGCCCTTGCTGCTCAAGAATTATGATACACTTAACATCCGTACTGGTCATTATACGCCTTTGGCTTTTGGTAGCTCACCTTTAAAAAGGGAATTAAAAGAATACTTAAGTGCTGGGTTTATCAATCTTGACAAACCATCAAACCCCTCATCACACGAGGTTGTAGCGTGGGTAAAAAGGATATTGAGAGTGCAGAAAACAGGCCATAGTGGAACCCTTGACCCCAAGGTCACTGGGTGTCTCATCGTGTGCATAGAACGTGCCACAAGGCTTGTCAAATCACAACAGGGAGCTGGAAAGGAATACGTAGGTGTGGTGAGACTTCATGATGCTATAGAAAATGAAACAAAACTGCATAAGGTAATGGAAACGTTGACTGGTGCACTCTTTCAAAGACCGCCACTTATATCTGCAGTAAAGCGGCAGTTAAGAATACGGACAATTTATGAAAGTAAACTTTTAGAGTATGACCAACAAAATCATTTAGGTGCTTTTTGGATAAGTTGTGAGGCTGGAACCTATGTCAGAACACTTTGTGTGCACATGGGATTACTACTTGGAGTTGGTGCACACATGCAGGAACTGAGAAGAGTGAGGTCTGGAATCCAGTCAGAAAATGACAATTTGGTAACGATGCATGATATCCTGGACGCGCAGTGGCAGTATGACAACTATAGAGATGAGTCTTATTTACGACGAGTTATTAAACCACTTGAAGCTTTACTTGTTTCTCATAAGAGACTGGTCATCAAAGACAGTGCAGTTAATGCTATTTGTTATGGCGCCAAGCTGATGTTACCTGGTATTCTTCGTTATGAGTCCGGAATTGAACTCAATCAAGAAATTGTCATGATGACAACCAAAGGAGAAGCTATAGCGATTGGAATAGCACTTATGACAACAGCAACGATAGCAACATGTGACCACGGTGTTGTAGCAAAAATCAAACGCGTCATTATGGAAAGAGACACATACCCACGAAAATGGGGATTAGGACCAAAGGCACTTCAGAAAAAAAAGCTAATTGAGGCAGGGAAACTTGGGAAATTCGGTAAACCTATAGAAGGCACCCCTAAAAAGTGGACAGATGATTACACTGACTACAGCACTGTTAGTGCGGAACAACTTCTAGAGGAAGCAAAGAAAAGAGAAGAAAAACCAGCCGTCGCTTCGTTAAAGAGAAAACATGCTTCAGATGGAAGTAGCGATGAGGCTACAAGCACACCGTCTAAAAAAGAGAAGAAAAAGAAAAAGAAGTCCAAAAGCAAAGAGGGCGAAGAAGAGGCACCGAATACAAGTGCTGTCGTGGATGAGTCGTTGAATGAAGTTAAAGTTAAAGTTGAGGTTgatgaagaggatgaagagaccgagaaaaagaaaaagaagaagaagaagaagaaacacagtacacaagatgaagaggcataaaaagCTTGCCATATAAGAGTATTTTAAGTCCTGCTTTCCAGCTTAACTTTGTATCAGGGCCATTGTTGACAAGGGCAACAAAGAGCAGACGCTAATTGGTCTGTGAACCGTTTAGGATCACGTGTTTTTCTACCTACAGGTGACGGAGAACTTTGTAGGGGAATAACTGCATTAATAATTACTGGGGGAAATGGATGAATCCTCGTTTGATTATGGGTGAGATCGTTGCCAATATCTGCTTAATGTTTTGATATGGGAATTCTGCTCAGATATAGAGCGATTTTATTTACAAAATACATCATTTTTCAAATGACCTATTTTGCACTTCACAAGAAGTGATACCCTTGACACGAAAGGAAAAGTACACAGAGTATGAAACAACGAGCGTTTTAAATGAGCTCAAATAAATCTCTCACGTTTTAGTCCTAACCACGAAAATAAGGCTGGTGTAATGTTTGCTGAAATGCTCTTTATTTACAGCTAACCAAATTGAGAAAGGGTTTCAAAAAGGACCTACGCTTTTTGCAAGGGTAAAAGGGTTCAGACGAAAAGTGTACACCTTTTATTTAAATGAAGTCGTATTGTTCAGACGTATTTGGGAAAGAAGAGGTGTGAAAAGTAACCTATTCTGGGGTTACTTAATTTTTTGAACGAACCTTTAGAAGAGATTTCCAAATTCTCTACTACCAGGGCAAACACTTTAGAAATTTCTCTTAAATAGATTTCAAAATAGAACTATTTTTAACTGCAGATAAATTTCACCCCGCAAAAATTGTTTCTTCTTTTTAAATAGTGTATTGGTACACAGGATTCATATGGTCATTTTCTTTGCAATAATAGACCTTATTGACTGTTGGTATAAGGAGGAAAGATGATTACAACCGTCTAAAAAGGATACCCTATTTTATTTACGGAGTTTTTTTCAGTTGAAAAATACCTACCAGTCTATCTAATATGATTAAGAAAACGAATCTGCGCTATAATTTGGTGGGATAAAGGAGTGAATTATTCAGACTTCTACTTCAAAAAAATTCAGAATGACAATAAAACTCCGGACATGACTGAGATGGAAGAGGCTTTGACCCATCTACTTATGAACAATGTCATTTTATGACTTTGCATGGTAATCAACCGTGACTATATAGTAGTCAAGTTATGTCTTATTTTACTGCTTTTTATATTATGCCGCGTACTTTTCCACAGTACCTGTATCTTTAATGGTTTAAAGGTATAAATTGGCTAAAGTCGT

Protein

Uniprot

Uniprot term	Description
Q9ESX5	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4
O60832	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3
P40615	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01472	PUA	PUA domain	Family	Interproscan
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002478	Domain	PUA domain	Interproscan
IPR032819	Domain	tRNA pseudouridylate synthase B, C-terminal	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR036974	Homologous_superfamily	PUA domain superfamily	Interproscan
IPR004802	Family	tRNA pseudouridine synthase B family	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR004521	Domain	Uncharacterised domain CHP00451	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000495	Biological Process	box H/ACA sno(s)RNA 3'-end processing	Interproscan
GO:0031118	Biological Process	rRNA pseudouridine synthesis	Interproscan
GO:0031120	Biological Process	snRNA pseudouridine synthesis	Interproscan
GO:0031429	Cellular Component	box H/ACA snoRNP complex	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11131	DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4	EC:5.4.99.-	DNA replication proteins	ko03032	deepkoala