Gene detail

Detailed information of scaffold146.g7.t1 in Morbakka virulenta

Genomic Location: scaffold146:201301...205255
NR annotation: MCK5872762.1, hypothetical protein [Methylococcales bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold146.g7.t1

ATCTAAAAACTTTATATACAGACATCGCTTTACAAGTACTCTGCACGCGTTATTGATCCGATACAATCCAGATAACAGATATGGCTGGTTATATTTAAAAAATCGCAAGCGTTGGACCGAATGCAATTCAAACGGCCCTCAAATACCATCCACTGTCACCTCAATGTCGCCAGGAGCTAAGAGCACTCGCTCAAGCTGTGGAGAAAGCACCTAAAACGCTCAAGGAAATGACAAAACGAACACCTGAGACTGACTTTAGTGAGCACATCGCACCAAAACTGAAGAGAATGTTAGAAGACCAGGCTAGGAATCCTCAGGACTTCACGTTACCGGATGTGGACTTACGTTTCGTGGATATTAGCGACTACACCCTCGATCAACTAATTCAGCGTCACCGGGAGTTGATTTTGTCCGAGGATTCGTTGAAAACCAGCATACTTCTGATACGCTTCCAGCGAGGTCTCTTGTATCAGCGAGCTCATCAAATAATTCCAGAATTCGAAGAGCTCAAGAGGTGGTTGTTTCAGAACTTTGGAGTTGCTTACTCTACAGCTTCTGCCTACATCGCGGTAAGTACACTTGTACAATGTTACCCACTTCTGATTAAAGCCGGGCTCTCTTTTGAGCAGCTGAGGAGACATGCTGGACGTATCCGCAAATTTGCGAAAACCAACATGGGGTTGGATGAAACTTGTGTAATAATGACACCGATTGGCCATGAGGTTGGCACCATAGGTGTTATAGACGTTGGGGTAGAGATCCGGGATAGGGCTGCACAGGATGCTGACTTTGAGTTTAACCAAGGGGTGGACGAGAAGCAGGAGCAGTTTCCCTATTTCGATGCTTTAGTGGGTTCGTATGAGGAAGTGTGTGAAGACGCTGAcaaaacaaCCAAAAAAAAAGCAACGAAATTCTCTGatgaactagcaaaagagctccataagcctataaaaaggaagtttcccaagagacgagtagtagtgaatggaatagatcacatatggacttctgatttagctgatatgacttctctgagcaagcaaaaccaaggttacaaatatattctagtagtcttagatgtcttttctaagtatgcttggatgatatcactgaaaaacaagcagggtgaaacagtagcagaagcattcaaggacatattcaaaacatcgaaacgcagacctcaaaaactttgggtagataaaggcaaagagtattataacaaacatgtgaaggacatcctagagatatatagtacagagaatgaggaaaaatcaagtgttgctgagagatttataagaaccatgaaagaaaagatgtatcactactttactgccaacaatacaaacacatacatagatgtcttatcaaaacggctacagaaatacaatagtactaaacatagtagtataaaaatgacacctattcaagccagtaagaaagaaaacgaagaggaagtctacaaaaatctttacggagatgagaaacattacaacgtaaagcaaaagccaaagtttaaacttggagatctagtaagaataccaaagaaaaaaacaacttttgagaaaggttttaccccaagatggactgaagagctctttagaatcactggaattatatacactgtaccaataacatacagaatacaagacttaaacaacgaagaaattcaaggtactttttatgaacaagagttgcaaaaatcaaagcaagaagtattcagaatagaaaaagttatacaaaagaaaggcaaaaaaatgttagtgaagtggaaaggatatcctgatagctttaatagttggatagatgtgaacgaagtGAAGCAGATACAAACATGATCAAAATTTCTTATATCAAAGATGAAAATATATAAAAATATATTATTTTTTTTTCAACACATTACTTCAGCTCATATGTTACAGTTATTACACCTTGTTTGATGTCTGATAATGTATCTATTTGTATTTTATCACCTTTGTGCACAAGTACTGTATCTATAAGTTTTTCATTATATGTGTTTGCATGTAGCCAAATAACATGTTCATCGATTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan