Gene detail

Detailed information of scaffold1471.g2.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1471:25316...64093
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1471.g2.t2

ctctgaaaataattttgttttggcaggaaatttcccagctattggtgatgatttggtcaattcataccatctcttcctttgctgtcttgatcttatgttcattaatacattgacatcaaaaggaagaaaagaattgctcaaccctaaatttgaaggtctaccagaagattttaagaccaaagactttaatgatgatgatttgccatcagctatagataatttatgcaagaaatatgatggtctgccgaaagaatcaaaggaaataagggaacatcactttaagcctttcatccgcaagttatttacaaacaaagtactgaaaggtaatccagaaacactgacagggcttttagagtcaggaaatgtcgagtataattggaaacatatcaatcaagattatgacgaatatgtgttatcatctggtgaaattgacgaacggctattccttggagaagatgcaaatatcgagattggaacaccattgaagtcatcgcaggcttcagatgaagtcgatgaaacggggaggtcacatctcaaaagaaacctccaggagcatttcgaaagaacgtccagtgcaccattgactccgttaacgggacgaaagtatctcagagagaaggacaatggcggatttactccaatttcaaacgcaacgcagtctgtcagccgtctccaaaaccatttacttggacataaagcagctccaagcgaggcacttaataccatgttcaatgaatgtaagcagaaccccaaagaagaagtcgacagaatcatttcagaactcgaagcaatattcagaacatcttacacgcaaccgtcatttgacagaccccagtctccttgctcgaccatggagtttgccagtaacagatggaaattggctcttgtgcttttttacaaggtgctggagaatatcatgaaaaccgaaaagaaaataaagccaacagtagacgctgggatcatcatctgccaagaattgtttataaaagcactgatggcatgctgtttagaaatagttatttcgtcctataattcacaaaaaaccttcccgtggattcttcgaccatttgaacttagtccatttcatttctacaagataatagaagtagttatccgagaagaggaaggtttgtcgagagatgttgtaaaacacctgaataaaatcgaagaaaatatccttgagagatacgcttgggaagagaattccgttttatacgaaactttgaaaaatgctggggataaagttccttcgtgtgaaaatgtttgtggtgctcctccagtgcaaaatgacgttcctcttacattcccgcctggaactattttatctcctatcatgcaaaggcctgtttacaaagtttctggagacaaaattgttggatatccacaacaatccccgacagcaaccatttctgacagatttggtactgtttccatgaattcagcgaagcggacattattctcagcatctgcgtcgccgaattcaccaaatgttccaggatctgtgacaaacatgaatgtatcaccacaaaaagcaactgtcctcggtacactcagtggaaaatttgtcatccagcctactaaaggtactgctggtggtcgagttcctatacagttaatgattgcaagcccaagtgcgtcgccaagcaaatcccctgctaagtattcagacaaaggaagtcctatgagcaaaggagcttcaaggactggaagtcctgctaaagcaaaaccaaaaacaagcgcactcggtctcttctttagaaaggtgtatcaccttgctagcgtccgaatgagcgacttatgttcaaaattaaacatttcaagcgatcttcaacagaaaatctggacatgcttcgaatatgccttggtcaatcgaatatttttaatgaaagatcgtcacctggatcaaatgctcatgtgtgctatttacgtcatgtgtaaagtgacaaaagaggacaaaacattccatgatatcatgaggtgctataggcagcagccgcaagcaaatagtgacgtatgtattattttgaaaccattgacatcttagctccttttattatctgactgaagttgcaaatatattagagaaaggcgatattcattgaacttattctctaccttaatgaaaacatgttccaatggataaagaccggtaattttc

Transcript

scaffold1471.g2.t2

CTCTGAAAATAATTTTGTTTTGGCAGGAAATTTCCCAGCTATTGGTGATGATTTGGTCAATTCATACCATCTCTTCCTTTGCTGTCTTGATCTTATGTTCATTAATACATTGACATCAAAAGGAAGAAAAGAATTGCTCAACCCTAAATTTGAAGGTCTACCAGAAGATTTTAAGACCAAAGACTTTAATGATGATGATTTGCCATCAGCTATAGATAATTTATGCAAGAAATATGATGGTCTGCCGAAAGAATCAAAGGAAATAAGGGAACATCACTTTAAGCCTTTCATCCGCAAGTTATTTACAAACAAAGTACTGAAAGGTAATCCAGAAACACTGACAGGGCTTTTAGAGTCAGGAAATGTCGAGTATAATTGGAAACATATCAATCAAGATTATGACGAATATGTGTTATCATCTGGTGAAATTGACGAACGGCTATTCCTTGGAGAAGATGCAAATATCGAGATTGGAACACCATTGAAGTCATCGCAGGCTTCAGATGAAGTCGATGAAACGGGGAGGTCACATCTCAAAAGAAACCTCCAGGAGCATTTCGAAAGAACGTCCAGTGCACCATTGACTCCGTTAACGGGACGAAAGTATCTCAGAGAGAAGGACAATGGCGGATTTACTCCAATTTCAAACGCAACGCAGTCTGTCAGCCGTCTCCAAAACCATTTACTTGGACATAAAGCAGCTCCAAGCGAGGCACTTAATACCATGTTCAATGAATGTAAGCAGAACCCCAAAGAAGAAGTCGACAGAATCATTTCAGAACTCGAAGCAATATTCAGAACATCTTACACGCAACCGTCATTTGACAGACCCCAGTCTCCTTGCTCGACCATGGAGTTTGCCAGTAACAGATGGAAATTGGCTCTTGTGCTTTTTTACAAGGTGCTGGAGAATATCATGAAAACCGAAAAGAAAATAAAGCCAACAGTAGACGCTGGGATCATCATCTGCCAAGAATTGTTTATAAAAGCACTGATGGCATGCTGTTTAGAAATAGTTATTTCGTCCTATAATTCACAAAAAACCTTCCCGTGGATTCTTCGACCATTTGAACTTAGTCCATTTCATTTCTACAAGATAATAGAAGTAGTTATCCGAGAAGAGGAAGGTTTGTCGAGAGATGTTGTAAAACACCTGAATAAAATCGAAGAAAATATCCTTGAGAGATACGCTTGGGAAGAGAATTCCGTTTTATACGAAACTTTGAAAAATGCTGGGGATAAAGTTCCTTCGTGTGAAAATGTTTGTGGTGCTCCTCCAGTGCAAAATGACGTTCCTCTTACATTCCCGCCTGGAACTATTTTATCTCCTATCATGCAAAGGCCTGTTTACAAAGTTTCTGGAGACAAAATTGTTGGATATCCACAACAATCCCCGACAGCAACCATTTCTGACAGATTTGGTACTGTTTCCATGAATTCAGCGAAGCGGACATTATTCTCAGCATCTGCGTCGCCGAATTCACCAAATGTTCCAGGATCTGTGACAAACATGAATGTATCACCACAAAAAGCAACTGTCCTCGGTACACTCAGTGGAAAATTTGTCATCCAGCCTACTAAAGGTACTGCTGGTGGTCGAGTTCCTATACAGTTAATGATTGCAAGCCCAAGTGCGTCGCCAAGCAAATCCCCTGCTAAGTATTCAGACAAAGGAAGTCCTATGAGCAAAGGAGCTTCAAGGACTGGAAGTCCTGCTAAAGCAAAACCAAAAACAAGCGCACTCGGTCTCTTCTTTAGAAAGGTGTATCACCTTGCTAGCGTCCGAATGAGCGACTTATGTTCAAAATTAAACATTTCAAGCGATCTTCAACAGAAAATCTGGACATGCTTCGAATATGCCTTGGTCAATCGAATATTTTTAATGAAAGATCGTCACCTGGATCAAATGCTCATGTGTGCTATTTACGTCATGTGTAAAGTGACAAAAGAGGACAAAACATTCCATGATATCATGAGGTGCTATAGGCAGCAGCCGCAAGCAAATAGTGACGTATGTATTATTTTGAAACCATTGACATCTTAGCTCCTTTTATTATCTGACTGAAGTTGCAAATATATTAGAGAAAGGCGATATTCATTGAACTTATTCTCTACCTTAATGAAAACATGTTCCAATGGATAAAGACCGGTAATTTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01857 all species →	RB_B	Retinoblastoma-associated protein B domain	Domain	Interproscan
PF01858 all species →	RB_A	Retinoblastoma-associated protein A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028309 all species →	Family	Retinoblastoma protein family	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR002719 all species →	Domain	Retinoblastoma-associated protein, B-box	Interproscan
IPR002720 all species →	Domain	Retinoblastoma-associated protein, A-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13742 all species →	RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:2000134 all species →	Biological Process	negative regulation of G1/S transition of mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1471.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.