Gene detail

Detailed information of scaffold149.g17.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold149:271370...311024
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold149.g17.t1

agttgattcattttgctgaatccccctatgtcttctctttaacaggtaaaggaagcaaaagcatcctcatggggaaagatctcagcattatcagaaacatcaaagaaccctggagacatgaaagttactatgcagagatcaaaccttttacaagatgaagatttcactgaagttgacgaggagaatatcgcaaaaggtaaaggaagcaaaagcatccgcatggggaaagatctcagcattatcagaaacatcaaagaaccctggagacatgaaagttactatgcagagatcaaaccttttacaagatgaggatttcactgaagttgacgaggagaatatcgcaaaagcatacaagtatggcaagaccttggttccgtacagcaaggtggacgagcagagtttaaaactggagacagaaagatgcatgaaagtgctcggtttcactagcagatcaaatatcaacgaaagtcagtatcaaggagagtcggtgtatttatttataccacaacctggggacaaggatgcagctgttgcattatcagccctagcacacgcattagaagagaggaatatggtagcagtagtacgatattgcagatgcaaaaatgctgcaccaaaactggcattcctgactcctgtcatcaaagtgaattacgagggatttctcatgtttgccttaccatatgctgaagatgttcggcgatatccctttgcatcgttggaaaatatatcagttacagatgaccagcttaatgcagttgatgctttaatcgatggaatggacctctcacaggcaaaacgtgatgaagatggtgagcaagttgaagcattcaagccaaaggatattttgaatccccttatccagaggcagtgtcagtgtgtccagaaacgagctctgaatcctgatggagatgaaattcctgtgatcgatgaccacataaaaaggtcaattgagccaattcccgaacaagcagcagcgtgtagacaaatttatgacaaattaaaggacctctttccattgaaaattgtggacaagaaggggacaaaagttgctgcaaatatctttcaacaaagcgaggaaaagaacgaacctgacaaaaagaaagttaaacttgatgataacgcagcagatggaactacattcagtttctcatcattggcaagggaaaatatcagtgaggtaggaactgcggagccagtgcaagactaccaaaccttgattagaaattctgattctgcaacattcagagatgaaaataccggtttgatcactgttaaggagaacaataaaagcatggtatctgatgaagatgcatcacagaaggaagattatgtcactgcaagaccagttattttatctcacagagattagacgcttcaagggacngcgctcagtgaagaaacttcaatcacgctctaaatataaatatactgtaaagacgctgtaaagatattttatcgctgcacaaaggaacgttgtgttaagttgtactgcagggtgtcccaataaaattgtgccccgtttgcctgaagatttcaaaaaaacggcaaaagattctcgccaaaattttgcatgatgttactcttcagattttcaatcaaagtttgcaataaacttgctctaaaaacttttgattgagttgcctattttcaggctaaaataaaacacgctcctggttttttttgaagatcggaaatggctgcaaatcgatccgcagtttttgacgacattttgaggatttcaagcatgctattttcctcgaaatccttaattcgggaaaattaccgtgccgaaaacaattgcgaaaagtactcggaacttaggctggactttttgcaacagaacaaggttagcagcatttcaatcggtcacttactttttttctgtaacagattgcgttggatcaccttttttgggtcacccgatataaagatttaaaccgttttccgtaaactgtctagacttgctaccagtctatcgtttggtgctaaagaagatggtcaaatagagacttgtagcaagt

Transcript

scaffold149.g17.t1

AGTTGATTCATTTTGCTGAATCCCCCTATGTCTTCTCTTTAACAGGTAAAGGAAGCAAAAGCATCCTCATGGGGAAAGATCTCAGCATTATCAGAAACATCAAAGAACCCTGGAGACATGAAAGTTACTATGCAGAGATCAAACCTTTTACAAGATGAAGATTTCACTGAAGTTGACGAGGAGAATATCGCAAAAGGTAAAGGAAGCAAAAGCATCCGCATGGGGAAAGATCTCAGCATTATCAGAAACATCAAAGAACCCTGGAGACATGAAAGTTACTATGCAGAGATCAAACCTTTTACAAGATGAGGATTTCACTGAAGTTGACGAGGAGAATATCGCAAAAGCATACAAGTATGGCAAGACCTTGGTTCCGTACAGCAAGGTGGACGAGCAGAGTTTAAAACTGGAGACAGAAAGATGCATGAAAGTGCTCGGTTTCACTAGCAGATCAAATATCAACGAAAGTCAGTATCAAGGAGAGTCGGTGTATTTATTTATACCACAACCTGGGGACAAGGATGCAGCTGTTGCATTATCAGCCCTAGCACACGCATTAGAAGAGAGGAATATGGTAGCAGTAGTACGATATTGCAGATGCAAAAATGCTGCACCAAAACTGGCATTCCTGACTCCTGTCATCAAAGTGAATTACGAGGGATTTCTCATGTTTGCCTTACCATATGCTGAAGATGTTCGGCGATATCCCTTTGCATCGTTGGAAAATATATCAGTTACAGATGACCAGCTTAATGCAGTTGATGCTTTAATCGATGGAATGGACCTCTCACAGGCAAAACGTGATGAAGATGGTGAGCAAGTTGAAGCATTCAAGCCAAAGGATATTTTGAATCCCCTTATCCAGAGGCAGTGTCAGTGTGTCCAGAAACGAGCTCTGAATCCTGATGGAGATGAAATTCCTGTGATCGATGACCACATAAAAAGGTCAATTGAGCCAATTCCCGAACAAGCAGCAGCGTGTAGACAAATTTATGACAAATTAAAGGACCTCTTTCCATTGAAAATTGTGGACAAGAAGGGGACAAAAGTTGCTGCAAATATCTTTCAACAAAGCGAGGAAAAGAACGAACCTGACAAAAAGAAAGTTAAACTTGATGATAACGCAGCAGATGGAACTACATTCAGTTTCTCATCATTGGCAAGGGAAAATATCAGTGAGGTAGGAACTGCGGAGCCAGTGCAAGACTACCAAACCTTGATTAGAAATTCTGATTCTGCAACATTCAGAGATGAAAATACCGGTTTGATCACTGTTAAGGAGAACAATAAAAGCATGGTATCTGATGAAGATGCATCACAGAAGGAAGATTATGTCACTGCAAGACCAGTTATTTTATCTCACAGAGATTAGACGCTTCAAGGGACNGCGCTCAGTGAAGAAACTTCAATCACGCTCTAAATATAAATATACTGTAAAGACGCTGTAAAGATATTTTATCGCTGCACAAAGGAACGTTGTGTTAAGTTGTACTGcagggtgtcccaataaaattgtgccccgtttgcctgaagatttcaaaaaaacggcaaaagattctcgccaaaattttgcatgatgttactcttcagattttcaatcaaagtttgcAataaacttgctctaaaaacttttgattgagttgcctattttcaggctaaaataaaacacgctcctggttttttttgaagatcggaaatggctgcaaatcgatccgcagtttttgacgacattttgaggatttcaagcatgctattttcctcgaaatccttaattcgggaaaattaccgtgccgaaaacaattgcgaaaagtactcggaacttaggctggactttttgcaacagaacaaggttagcagcatttcaatcggtcacttactttttttctgtaacagattgcgttggatcaccttttttgggtcacccgatataAAGATTTAAACCGTTTTCCGTAAACTGTCTAGACTTGCTACCAGTCTATCGTTTGGTGCTAAAGAAGATGGTCAAATAGAGACTTGTAGCAAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02735 all species →	Ku	Ku70/Ku80 beta-barrel domain	Domain	Interproscan
PF03730 all species →	Ku_C	Ku70/Ku80 C-terminal arm	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR006164 all species →	Domain	Ku70/Ku80 beta-barrel domain	Interproscan
IPR024193 all species →	Family	Ku80	Interproscan
IPR005160 all species →	Domain	Ku70/Ku80 C-terminal arm	Interproscan
IPR036494 all species →	Homologous_superfamily	Ku, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12604 all species →	KU AUTOANTIGEN DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0043564 all species →	Cellular Component	Ku70:Ku80 complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold149.g17.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.