Gene detail

Detailed information of scaffold149.g45.t2 in Morbakka virulenta

Genomic Location: scaffold149:1446463...1459579
NR annotation: XP_002153900.3, amino acid transporter AVT1D [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold149.g45.t2

tccatgaagtaggattcatcaaaatcgacgttcaccattataataccttggtacacatatacaataaataaacattgtgtaagcccagataaacccaaagctatctgtacttgcgtataataaccaaaagcatgatcctttttttaaaatagttcaccattcggcaatgaaccaatgtaaaatttctcatcattcattaaatcattaggattaacgtttctttttgtgtaagggcactttacttccatcaaaaatgaacccgacttcgtagaaacaagactatgaagagcagttttcataacaggatattttactgtctctttgtttcctggaacaccccattttctaagtacactagtacatgctctttcagttggtactaccttcaatgaatgcaatgagtattctgccagttcgaagagtaaagccattacatggttgcaatacccacttaaaccagcaggacagttacattttgctttatccacctcactgttttttcggttaataataatcctctacttgcctctgcagttttttcatgcttgctcgacatgaagctttggctataaaatactttaaagttcgtgcagtaaacaaactttccgataaaatgtaacgttcctgtttaaacttaagccctctttctaatgtttttttaatatgtaacctttttattttgccacacttcccaacatggaggtctatttctcgcctagtaaataccggaagaaaatccagaggttttccccatatcaaattttctttggatttgttatctATACCGATGTTGATGAGGCAAATGAAGACAATGAAACGGAGGATCTTCCTAGTATTGAGAAAGGTATCTCACCTTACGTTGCTGGCGCATTCATCGTTGCAGAAATTGCTGGTGCAGGCATACTAGCGCTACCAAAGGCATTGACATCACTTGGTTACCCTGGAATAATTTTATTTGGACTAGTGGGTATTGTCATGTTGTACACAGGTATACTACTTGGTAACTGCTGGATCAAAGTTTACGGTGCGAAAACGGGAAGTGAGCCAATTCGTGATCCATATCCAAAAATTGCGGAAGCTGCGTTTGGAAAATTTGCTCGTGTCGCTGTAATTACATTGGTTCTGATGCACTGTTTTTTTGTTGCTGCCATTTACATCATAATGCCGTCACAAATGATTGCTACAATGTTGAACATTCATTTTCCAGGAGTTAGCGAAATTAATGGCACGCGATTGTGGAGTTTCTTGTTTGCAGTTGTTATAACACCGTTGACTTGGTTTGAGTCTCCTAAGGATAATTGGCTTGTTGCTATTGTTGGGAGCTTAACCACATTTGTGTCAGTCGCTTGTATTATTGTTGGCTTTATACTTCTTCCTGTATCAAGCTGGACCAACTTTATGTTTGACAACAGACTGGGTAGTGCACTCAACCCAATTGATAAGttttcagtaagccttggaatctttatcgcttcctttacaggggcagtcatttttccaacaatacaaacagacatgaaaaagccaaaattgttttcaagggcACTGGTTATTGGATATCTTGGATGTACGGCTTTCTATATCCCTGTTATGTTAGGAGGAGCTATTATTTTTGATGGTTATACCAAGGACAATGTTCTTCTGTCACTTATCAGTGCTGTTAACATATCTCGTTACCCAGCATTATTCAAGGGACTGATATATACTGGAACGTTCTCATTTCTGTTTCACTTTGCGGCAGGCGCAGTTATACAATCAAATCCAATAAACCAGTTAATAGAGTCGTACACGAATATTCCAGAAGGTTGGAGTTGCCGAAGGTGCATGATAAGGACCGGATTTATGGTCGCAGTTGTTCTCTTGGCAGTTTTGATACCGAATTTTACACCGATTTTATCATTTTTGGGAGGAACGATTAATATGCTTTTGAGCATAGTATTTCCAGCGTCATTCTTTTTGGCACTACACGAAGATGTATCAAAATCTCATAAAGTTTTGATCGGGGTCATTATTATCACTGGCCTTTTCCTTACAGGCCTAATAGGGTACATTAATTCAGTTGGAATGTACCACAGCATGACTCAGTGAAAGTATTTTTCGAAATAAAATCAGTTGTTTTTC

Protein

Uniprot

Uniprot term	Description
F4ILY9	Amino acid transporter AVT3B OS=Arabidopsis thaliana OX=3702 GN=AVT3B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48017	OS05G0424000 PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala