Gene detail

Detailed information of scaffold15.g52.t2 in Morbakka virulenta

Genomic Location: scaffold15:2070620...2099678
NR annotation: XP_047124043.1, probable RNA-binding protein 46 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold15.g52.t2

ATGTGCTGTCAGTGATCATTACTTGATTTTCAATTTGGACGTGAGTTTGAGATGACTGTTAATACCTATGAAAACTCATCGATCAGAGAATCATCAAATAATTCCCAGGACAATAACTTGATAGACGAAGACATGAGTATGACCAAAGGAACCAATGGGGATGATCAAGGAGCTAGGGAAGGAATTACAGGCTTGCCAAATGAAGCTGCATTGAAATTATTAACTGACAAAACAGGGTACCCTATCACACAGAATAATGGCCAGCGAAGGTATGGTCCTTCACCGTGGTATGATGGACCCAAACCATGCCGTGGATGTGAAATTTTCGTGGGAAAGCTTCCCCGTGATTGTTTTGAGGATGAGCTGGTCCCGGTTTTCGAAAAAGCAGGACCATTGTACGAAATGAGATTGATGATGGATTACAATGGGCAAAATCGTGGTTACGCGTTTGTTGTTTTTACCAACAAAAGGGATGCACAGAAGGCAGTAAGAACGCTGAATAATTTCGAAATTCGCAAAGGTCGCCTGATTGGTGTTTGCCAGTCCGTCGATAATTGTAGGCTATTTGTTGGAGGTATTCCAAAGAAAGTAAAACGGGATGAAATTTTAGAGGAAATAGCCAAAGTGACCGATTGTGTGGTCGATGTTATAGTTTACCCTAGTGCTACAGATAAATCGAAAAACCGTGGCTTTGCATTTGTAGAATACGAAAATCATCGTGCTGCTGCTATGGCAAGGAGAAAGTTGATGAGTGGAAGGATTCAACTTTGGGGTCACCCGATAGCTGTGGATTGGGCTGAACCAGAGCAAGAAGTGGATGAGGAAATCATGGATCAGGTCAAAGTCTTGTATGTTCGGAATCTCTTGTTAACAACAAGCGAAGAAACGATAGAGCAAATTTTCAAAGGATTTTCGGACGTCGAGAGGGTGAAGAAAATAAAAGATTACTGTTTTGTTCATTTCACCACAAGGGAAGGTGCTCGCGATGCTCTGCAAGGGATGCAAGGAAATAAAATCGATGGAGCAGAAGTGGAAGTAACACTTGCCAAACCGGTTGACAAAGAACACTATAGACAGCAGAGAGCAGTGGCAAAGTTGATGCAATATGCTCATAATTACAATAATTACACGTTCGTTCAACCGGAGTTTCCACCTTCTCCACCAGTGCCGTATTCCCCACTTTTACCGGGAATGGGATACTTAAACCCAGGTGTAATTCCCAGACCACCTACATTCAACAACAGGCCCCAGTTACGTGGTAGAGGTCGAACAGCAGCAGGTTCAAGATCAGCAGGTGGTCGTGCATTCTTGCTCAATGGCTTTTTTCCACCTGGTCAGGTTTATCCAGGGTATCTAGGGGGAAGCGGTTTTGGAGGAAATAGTAGGAAAATGAAACACGTTAGTGAGGATCGACTATATGACCTAGTCCCCGGCATGGAACTAACCCCAACAAATCCTGTCACATTGAAACCACAAGACACGAGAACTCCTATCCAGGTGACAATCCCAGCTCTTGGTAATACGTACCAACCACCGAAACTCTGCAGAAGCGTTGATAGTGCCAAACTTTACGCATGCGAACACACACTTAATCAGCTAACCCAGGAAAGCACTCCATCACCACAACTTTCCCCAGTAGTAACTACGGCACCGTATCAAGTTCGAGCAATGGCACCTGTACTCCCCCAATATTCTCATTACGTTTAGGGCACCCACAAATGAATGGATCCCGGCATGGAAGTGAACCAGCAAATTTTTCCGGATATGTCCCAATGACGACCACGCCGACAGCGGTAATGACAAAGGTGACATGGCCTGCTGGATTGCCTGGCACACAAGAAGGAATGGGTAATTATTTTGAATATGCCGAGCAACAAGGCTATCCACCAAATATGTATCAGCAATATTAAGTATTTCATGAATTCTGAATATATGGAATTTTTAGCGAGTATTATATTGTTAACTAACGAGTTTTTATTCTTGAATTTTGTGAATGTGAAAGCATGAGCTGTTCCTGCCATTTGTGATAGTTTATTATGCATGCAGACGACAAAAACTCAACACTAAGACATGATTAACGA

Protein

Uniprot

Uniprot term	Description
Q91WT8	RNA-binding protein 47 OS=Mus musculus OX=10090 GN=Rbm47 PE=1 SV=1
Q5R9H4	APOBEC1 complementation factor OS=Pongo abelii OX=9601 GN=A1CF PE=2 SV=1
Q66H68	RNA-binding protein 47 OS=Rattus norvegicus OX=10116 GN=Rbm47 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006535	Family	HnRNP R/Q splicing factor	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan