Gene detail

Detailed information of scaffold152.g6.t1 in Morbakka virulenta

Genomic Location: scaffold152:75646...156621
NR annotation: XP_041371455.1, probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Gigantopelta aegis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold152.g6.t1

gtccggtttacatgctagcatgtgttggacgatttcttgaaattgacttccaagtttttctatccttcaccaggtctctgctgacacctttttgtttcagatccatccttatcacttcctcccatgttttctttggtcttcctctgccagtggttcctgccaccttgattgttctgcatctacttgtccaagcattcttgtccattctctccacatgaccaaaccaacgaagcctcctattctgcatacagctgccaatactgtccagattcaatctccttctgagttcattagaactgagcctgtcctttagacttacgttgcacatccatcttatcattctcatgtcattctgctccatgcggctgacatcttcagctttcactggccaagtttcactgccatacatcattgtgctacGCAACCATTTTGGCGAGTTCCAAAAGTGGGACAAGACGGTTACTGTTTGTTAGAATTCCATTTTACTTACATTTAAGAGAGTGTAATGGATATCATTTGCATATACGCCTTTCAGTCGGTCTAGAAGGAAAGAATGGAACTAAAGGAAATCTTCTGTTTAGAAGGGCACAGTGAGCGAGTATGGAATTTGTCCTGGCATCCCAAAGGAGAGCTTCTTGCTAGCTGTGGGGGTGACAAAACTATCAGGATTTGGGGCAAAGAAGGAAATGATTGGAAATTGAAAGCACTCTTGGAAGATGGGCATGAAAGAACTGTGAGAAGTGTGCAATGGTCACCCTGTGGGAATTTACTGGCCACAGCAAGTTTTGATGCAACTACGTCAATTTGGAGTAACAAAAATGGAGAGTTTGATTGTATCGCAACACTAGAGGGACATGAAAATGAAGTCAAATCAGCTGCATGGAGCCCCTCAGGATCCTTACTGGCAACTTGTAGCCGTGACAAAAGCGTTTGGATATGGGAAGTTGTTGATGAGGAATATGATTGTGCCAGTGTTCAAACCAAGCACACCCAAGATGTTAAGAAAGTAACTTGGCATCCATACGAGGAGATTTTAGCGTCCTGTAGCTATGATGACACAATAAACATGTTCAAAGATGATGACGATGACTGGTTCTGTTACGACACATTGACAGGGCATTCTTCAACAGTTTGGTCGATTTGCTTTGATAAAACAGGGGACCGTTTAGTTTCTTGTAGTGACGATAAAACGCTTAAAATATGGAAGTGCTATTACCCAGGAAACCAGCAAGGTATTGTTACAACTGGAAATGACCCAACCTGGAAATGCATATGTACACTGTCAGGGTACCATAGACGAGTTGTTTACGACGTTGACTGGTCACACAAGTCAGACCTGATTGTAAGCTGTGGTGGTGACGACAGCATCCGAGTATTCAAAGAGGAAGAAGAATTAAAGGACAGTGATCAACCGACTTTTAACATGATAACCTGTATAGACAAGGCACACACTCAGGATGTGAATTGTGTAAAATGGAATCCTAGTGATCCAACCCTTCTTGCATCATGTTCCGATGATATGACCGTGAAAATATGGAAATGTTGTCAAAGTAATTAGCTTTAAAAATGATGCTTACTGAAATATAGCTGCACGTTTTGTAGAAGGAAGTGTAATGAAACTAATAGAAGTTAACCTTAAATAATACAGACTGCCCTAACATTTTTCTTTGTTTTATAATACGCTTTAAATGCGATACCTGAAATGTTGTAAGATGGTAAAGTTTTAAGGCAGTGTATGAATACCGTTAATATATTATCGTTACCAGGACTACTGACCTGCGTCATTTGGTTTTTCATGGAAAGAAATTAATTGCTGTATTTCAGTAAAAATTATTCCTTCCAAAGAGCTACCCTGGAATGGGCATCCTCTTTCAGTTAAGAGTACCTAATGACCCCACTTTACCTTGAAGAGGTTTTCCAATTCAATGTATAATTGGTTTAAGGGGTCAAAAAATAAATCAACAGCATTTTTTTTGCTGTTTGTTAAATGTTATATTTTTTGTAACAAAATATGTGAATACTTTAGACGTAATCTTGTTTCTGTTGTTTACTGGCACCTTTAGTTCAGTACGCACGATGGTATTTTTCCATCAAACTAAGAACACTCCTTACAATGTTGCACCTCCAGTTTGAGGTACATGGATAAGGTATACTGTGTGTCATTACGATTTAACCTCGAGAAATAGGAAACTATGCTTTGTTTCTATTTCCTGGTTTGTTGAAGACTCCGTGTAGATGTTGCTTTTTGAATTCAACTTTGCATATGCCAAAATAGCCAAAATTGTCGTTTGCATCCGAAATAATACCTCTTCTGAACAATAATTGTCACCCAATACTTGCCATTTGTTGGAAAGTCTTCCTTGATTCGTAGTTACATTCTTAACTACTGACTATTGGTTATTCGCTAATATTTTACAGCATTTTTTCAATTACATATCTAGCGGCGTTTGTTCTTTTTATTGTAATGTTTTTTCTAGGTTTTAGAAATGCCCTTCCAATATATGTTTTGGCGCTCTTCCCAAATGGGGTGTTGGACTACGTCACTTTGCTACACCTGCTTCTTGCTGATTTTTGCTTGCCGTATTAGCATGTCACTTTCTACGGAAATACGTTTTGCTTTATTAGATTATTCCTTCCCAGGAAATAATGCCTGGAATCTTTTATTGATTACATTTTGCTGTTGTTTGATGGTTCATGGTGAATATGTTTTTGAGCTTGATATGTTATGATCTGTTTTGAGACTTGATTTGGGTTTTTTTGTGTATGTTCAGATATTTATGCCCCACTTCATATCTCTCTCTCTTTTTTCTTTCATAAACTGAAAAGACTAAA

Protein

Uniprot

Gene family

Uniprot term	Description
A7RWD2	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Nematostella vectensis OX=45351 GN=v1g226592 PE=3 SV=1
B4GDM7	Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila persimilis OX=7234 GN=Ciao1 PE=3 SV=2
Q292E8	Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Ciao1 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR028608	Family	Probable cytosolic iron-sulfur protein assembly protein, CIAO1/Cia1	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19920	WD40 PROTEIN CIAO1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0097361	Cellular Component	cytosolic [4Fe-4S] assembly targeting complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24730	CIAO1, CIA1; cytosolic iron-sulfur protein assembly protein CIAO1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala