Gene detail

Detailed information of scaffold155.g33.t2 in Morbakka virulenta

Genomic Location: scaffold155:1017426...1026482
NR annotation: EDO44940.1, predicted protein [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold155.g33.t2

cttggatcatttcaatgcagatgttgtctggtcctgcagctttgtttcttttcatcttggtaatggcagctttgacttcgctcttcagaatcttcgggccttctataggttttctgatgttgggtttttctcctctttcatccaagaacagttcatcaatgtattctgcccatcgatccatgatttcatctttttccatcagcagagatccatctctggcttgaatacattcgctggaaacacatgttttcctaccgacaagtgtgttgattttcttgtgcaatgatgaagggctttctactctgcatctctcgatttccgcgcactgtacatttagccattcttcttttgcttctctacacttctttctgatgtttcgattcagagtgtggtaccgatctgagtctttatttctcactttctgtctttcttccatcatttccaagatttcctttttcatccatccttttttccggtccctctttatcggtgggatcagctccttggcagtttcaaccagggcttccttcagcacttcccatttgctgacttggtcactttcgagagcagcaaatctattttgcacttccacagcatatcgtgtcttcatttctgcattctctcgtagtaagttccactgcagttttgcgtctggtatagcatgtttcaatttgcgaaggcgaaccttggtggtgcatactactggattgtggtcgctgtcacagtctgctccagggtatgcttttgcgttctgaactgagttcttaaatctatgattgatggtgatgtaatcgatttgatttcttgttctgtctcccggttgtttccatgtccatagacgtcgtttatggttcttgaaccaggtgttcatgatcacttggttgttagctttgcaccagtcagcccatcgttcccctctttcgttaatcactcctagcccatactttcctgatacttgctcgatttcttcactacctacttttgcattaagatcgcccataacaatgatgatgtcttgtgacttacattgtctttttgcttcatcgagttgctcgtagaacatttctatatcatcttcgctgctatctgctgtcggtgcatatacttgaatgagactgatgtcgaagggcctaccttttattctcaccagcattactctgtctgacagggtccaatagccgagtatgcacttgctggctgcttggtcaaatatgattcctactcctctttcatgcttgtttccactagagtatatgacttttttgccattcagatcgaaacttcctgaccctgtccatctcgtttcacataagcctagtatattgatcttcatacgatccatttcttgcttcacatttgatagttttcctgcttgatataatgtgcgtacattccacgttcctattcgaagacaattgttgttcctgacagtatctggattacggtcgggctccacctgtcggacatggaggttcctaccgagcgaggtgttagttgtcctaaccccattcacgctgttcgtgttattctttttcttgtgcattagcatgactttcttggcaagttacggtggtggtttgccattgccttccaccggtggatggccacttaaatctaatgcctctttgtgccctcagcataccacgatgcgcttgcaggttacgccttgttgccgttggtcctttgggactcatccaccaactctgccgttccctgtcttcatgcgcttagtgcaaggcgtgcactattcaccaacaacaagttgctggctaccctcatgttgtttagcccgccagctgaggcggtgtactggggtgtggccactgccgtgcacaagcagctacttggagccagacatgagaCCAAAACTGGACAGAAAAGGAAGCAGGAGGAGTCAGCAGAGCCGAGGTATGATGCCAAAGTGTCAAGGACAAAACCTGAGAGAGAAGAGAACAACACAAGGAGATATGAGAGAGGTGACTCACCTGGCTATGACTCAGACTCGGCAAACAGAAAACATTCATACGAGTATTCAAAGAGAGGTGGTGACTCCCCTCAAAGGCGTAGTGAGGATGGGTCACCAAGAAGGCATAGAGATGAAAGTCCTGTGAGACATCAAGAAGATGGTGGCAATATTCGACATCTCATTGTACTTGGCTTGCCTTACAAAGCAACAGAAGACGATATGAGGGAATACTTTGAGCAGTTCGGTGAAGTGAACTTCCTGGAGGTTAAAGTGAACCCGGAGTCGGGTAGATCTCGTGGGTTTGGATTCGTTGGATTTACAGACAGCATGGTTGCACGGGATGTACTCAACAAACAACACCATACCATAATGGGAAGAAGGATACAGGTCAATTTACCCAAACCAAAGGAAGACCTCAGTATCCCAAGCAAGCTGTTCGTTGGCCGTCTTGCAACAGCAACAGATGAACACGATCTAAGAGAATATTTTGGCTGTTTTGGTGAAATTTTGGATGTCTATGTTCCAAGACCCTTTCGTGGTTTTGGCTTCGTTACCTTTGGCTCGACAGATGCAGTTAAGCGAGTGATGCAGAGTAACCATGTCATACGAGGATCCCGTGTAAACGTTAAATTTGCAGAACCAAAGGATAGCTTGGCACTACTGAAAAACAGAGATGGCCATGGCATGGGTCACggaggcggtgggggaggaggtggtggcggtggtggtTATGGCTACCgagaaagggaacgagatagagatcgagaaagagGAGGTGGAAATAATTTACACGATGTTGCTAACGCCTTAGGCAGCCTTGCCCCAGGCTTAAATTTATTACAGACATTATTAGGAGCTGGTAACATGAGGTAAACGTTATCTACCTTAGTCAAGGTAGTAAGGAGCACTGGGGTTGGGAAATCTTAAAACTTGGTGCTTTAGTAAAATTTCGAGCAAATGGGATAGGAAAAGGAACCCTTGTTAGGGTTAAGCTATTGGGGTGGATTGTGATGCGAGCCTTGTTCAGTAGTATTGTATTTATACTGTGATTACCGTAAGAACTTGTTCTCGATTAGTTGAACAAGTGACCAGCATGCACGTGCAGACCATCCCACCTTTTTCTCACAGCAGCTGTTTTTATGGTGTCGATTTCCATTTTATGCTTTTCTTAAGATCTGGTTAAGGTAATTTGGTTTGATTTTTGCGTGTATGCGAAGGGTTCTAACTAGTTGTGCAAACGATATATACCCCCATACTACCCTGCTATCAGACTGCTTTATTGAATACAAAACATGTTAAAGCAGCAAAATCAAGAATACATTTATCAGTTAAAGAAGGATAGCAACTATTGTTTTTTATGCCTGTTATTTTGAAGAAAAACATTACAATCGGGTATTTTCTTTGACTTGGTTTTCACATACAGGCTTGGCTGTATTTATACATAGTCAGTATTTACATTTATGTTACGGGGTTTTGATTGCTTGGTGTGAAAGTTTTAGCTAGTTCTGACGACTTACGTTGTTTATAGTATGTTAAAATAGGTTCTAGGAGTGTACTATGGGGCTTTCGAGTTTATTTACATCGCATCTGAGACACATTAAAAGTATCAGAGATTTTAACAGTGTTGTATATCTAAAAGAATTCACATTTTTTGTTGTTGTGTGGATTAGTAGTAAACTAAACGATGGTAG

Protein

Uniprot

Uniprot term	Description
Q13148	TAR DNA-binding protein 43 OS=Homo sapiens OX=9606 GN=TARDBP PE=1 SV=1
Q5R5W2	TAR DNA-binding protein 43 OS=Pongo abelii OX=9601 GN=TARDBP PE=2 SV=1
Q5ZLN5	TAR DNA-binding protein 43 OS=Gallus gallus OX=9031 GN=TARDBP PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan