Gene detail

Detailed information of scaffold155.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold155:36446...57220
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold155.g4.t1

aatacctcgttttcaaaagtaaacctttcgacgatttatcacaaagcaatgaccaatgaagagttatttggtgaattcagcaaaacgtcacaaagctggtcggatggcttattacctaaatttctgcgtactgcttcgaaactgcagcacgattcaaaagaagatgagaagacatgcgacacaattcagtattggtttgtctttgatgggcctcttgaccgtaaattaaccgacccattagaatcattattggacaataaaaatgagctttgtttgataaatggagagcggattaaacctccagattctgtgagatttttattcgaaacgacaaacttagccgattcatctccagcaatcatatctcgatcagcgatcgtcaatttcgagaaaggattacttgattggcgatgtcttctttgctcatggagaaaatcagcacgtaccaagtttgatatttcgaatacagggatcaaagtcgttgagagcatgctggaacatattgacgagcccctagctgattttctctccaatgatgctgaacctctcttgacaaagaaatatgcatcaataactcacaacgccattgcatcatgtttgcctgaaatttcatccattctccagttattagcagcaattttggaacgttgtacctccagacagagtcacgaaagaagcttgatatcagatagctcgtctattctgtcagatgctggatccacacatagcagatcaaacgttgtgaaggagactgaggaaataaagtttatcagtaatgcttttgcatatgcctttgtatgggctgttggaggaagattacacgagagatgctaccccaaattcgacatgttttcacgacaattatttgcaacttgcccatattccatcatcttcccatgcactgtttttgatgcagtgttcgattacatggaaggtgaattgacgaggtggcaaggaaatacagcagatgtaccaaagacgatgccatctcagaattatgttgtttgccctgagatcgaaagatatttcacgatcgcagaccttcttctgatgtctggaagtcatgttttgattgctggtgaacaaggcgtcggaaaaacagcttttgtcaagaatcttttacaaccgagacaaaggctacagcagatcctaatatcccaaggcctgacatctcaatactttcaacaaaaaatacaacgtcatgtgcaggaaaaccaaaatcgcttccgcagcaatcctatgaaggcacctccgcagcaacagaagggattggggacgaacaagagcctctttttcatagatgatgtttcattggcagcatttgacagtcattgtaaaaacgcacaaccaacacttgagatcttaagacagatgatatctgagggtggaatatatcatcaagaaagacaatatttccaacatctcccaaatcttcagtttcttgctgcttgcatcccgcctgatggatatggaaaaggagggcctaaccgagaactcagtcccagattaacaagaagaatgaatatgataaatatgatgccattatcggatgagtcgttgagcacaatttacacaagtgtttacaaagcatggcttgaagaattccctgcttattctctcacacatatcgacccactggcaaaggcccttgcatatgcatccgttgacatgtataccaaaataaaggagaagttcagtgccactccaaccaacccacaatatgtattttcacatcatgatctagctcgtattgccaaaggtgttttcatttactccccaaagagtagactcagggcgagaaagtctggacatggatttgcaaaaggagatttaagtgtaaatcagagcatgccagatctgcaaataaagaactctatggcagctggattgccggatccaagtttatcagtggttgacctgcaagcgtatctcaacaaacataacatcgatcaaaccccagcatcagtttctcctcttattcggatcatcattcgactttggtgccatgaaacttgtcgttcattttacgatcgaataataaacaccgaggataaaaaatgggttgcaactacgttgcagaagactgtggttgtaaaattttgtggcgaaaaaccttctttagtcaacaaacaaggaattttgtcaagagaggcctcaacagtggataaaaagaatagcaaaaacagagtgaaattcaaggatattgaatcaacacgtcaggcagattaccacggtcccctaatttcactcaagcatcttatgggagacgatcaagcacttgctacgataacgttctcaaagcatttgtttatctacggaacacgtgggatagaaggagctggagaacacgagaaaggatatgttgaatgtcttgatcatcatttagaagaagcgcttcgtaaatcgttgaatctgatcaaaacagcagaaggagaacgattggatttggtgttgtataaagaggcattgtatcatgctgctagaatcagtcgtgttttgtctatgcctggtggtcatgcattgttggtttctctaaatggtcatggccgtgctaacattgtcaaactcgtggcaaaactcgcaaatatcaaaataatgacagtgagtgaatgtgctcttaaaaaccagacgaaattccgttcaattctcaaagatgcatgctatgttgcggggctgcttgggaaaccaattattgtgtacgttccagaaggtcttaacaaagaaggaatgcaggatgtggcagctatgcttgttgaaggaacctgtccagggctttacacaccggaagaacttattgccattggaaatcatttacttcctggaggacaagttggtcaaagacgaaccgagaacaaaatggttgcgcaggagcgttttttaaggagaatcagatcaaacattcatattgtcatctgcgcaatgcatttgtcattgaacaccatcatcaaggaatatccaagcatattgtcacgtgcagcttgtgttgacttttataatgaatggagtgttgacattttgaaagagataatgacagtgagtgaatgtgctcttaaaaaccagacgaaattccgttcaattctcaaagatgcatgctatgttgcggggctgcttgggaaaccaattattgtgtacgttccagaaggtcttaacaaagaaggaatgcaggatgtggcagctatgcttgttgaaggaacctgtccagggctttacacaccggaagaacttattgccattggaaatcatttacttcctggaggacaagttggtcaaagacgaaccgagaacaaaatggttgcgcaggagcgttttttaaggagaatcagatcaaacattcatattgtcatctgcgcaatgcatttgtcattgaacaccatcatcaaggaatatccaagcatattgtcacgtgcagcttgtgttgacttttataatgaatggagtgttgacattttgaaagaggttgcggaaagatggctaattgcaaaaggaaagaacgagtttttctacaaagttccttggaatcttgacgaaagagatcgccagctcacttctatttatgacgtaatggccaatatacatttaagctcaagagcagcgttagacaaagatttcagaaggcttggattggaagttttctccccattgaaattcgtggaattgattgacatgtttaggaccttatgcaatgtgatctgcaatgagagagaggaagaattatctcagctgacacgtgcaactgacaaagttaaagaaggcaagaaatatatcgaggatacggaaaagagtatatctgaattaacaccagtattggagaaagcaagactagccctgaaaacagccgacgcagaagtgaaattggcaacaaataagtatcatgattcaaaagaagcttgtgctgatcagcaaaatgaaatcgagaaactaaaaataccgttacagcgtcttaatgatgaggccaaagagcaatttggcaaggtaactccattgtatgaagcagctacggctacattacagtctttgagcatttacgtcgtggaagaagtgagaagttacagaagtccacctgaaggtgtgaaatttgtcaccgacaccttatgtctgatgtttggcaaggaggctagctgggaagtagccaaacgtttgttgattcgtgagaatttcttctatgatttgttattctacaacaaagatgaagtttctgattggttattcaagaagctggaaatttattacaaatcagaaaactccgatccaaaaactctgagctccatcagtcaagcagcaaaattattttctgtatggatcagaactgtttacgagtattgccgcatatcacgattattacgaccaaaacagctggagatcttggaggcagaaaacaaactgaagaaagctagagcattgcttggaaagttaagagtcgattcacatcatttgaagattgaattagaaaatgcaatcgaaatttacaaagactgcctgaaagaaactaagagtttagagaaacaattccaggtacgaatcccaccttagttattatgatctaacttgtttttatttctaatttcgcatttctattttgtcctcaacagtatcgaacacgttttactgtactgatggtcacctcagcattgctgattgtatcacccatattgctacatg

Transcript

scaffold155.g4.t1

AATACCTCGTTTTCAAAAGTAAACCTTTCGACGATTTATCACAAAGCAATGACCAATGAAGAGTTATTTGGTGAATTCAGCAAAACGTCACAAAGCTGGTCGGATGGCTTATTACCTAAATTTCTGCGTACTGCTTCGAAACTGCAGCACGATTCAAAAGAAGATGAGAAGACATGCGACACAATTCAGTATTGGTTTGTCTTTGATGGGCCTCTTGACCGTAAATTAACCGACCCATTAGAATCATTATTGGACAATAAAAATGAGCTTTGTTTGATAAATGGAGAGCGGATTAAACCTCCAGATTCTGTGAGATTTTTATTCGAAACGACAAACTTAGCCGATTCATCTCCAGCAATCATATCTCGATCAGCGATCGTCAATTTCGAGAAAGGATTACTTGATTGGCGATGTCTTCTTTGCTCATGGAGAAAATCAGCACGTACCAAGTTTGATATTTCGAATACAGGGATCAAAGTCGTTGAGAGCATGCTGGAACATATTGACGAGCCCCTAGCTGATTTTCTCTCCAATGATGCTGAACCTCTCTTGACAAAGAAATATGCATCAATAACTCACAACGCCATTGCATCATGTTTGCCTGAAATTTCATCCATTCTCCAGTTATTAGCAGCAATTTTGGAACGTTGTACCTCCAGACAGAGTCACGAAAGAAGCTTGATATCAGATAGCTCGTCTATTCTGTCAGATGCTGGATCCACACATAGCAGATCAAACGTTGTGAAGGAGACTGAGGAAATAAAGTTTATCAGTAATGCTTTTGCATATGCCTTTGTATGGGCTGTTGGAGGAAGATTACACGAGAGATGCTACCCCAAATTCGACATGTTTTCACGACAATTATTTGCAACTTGCCCATATTCCATCATCTTCCCATGCACTGTTTTTGATGCAGTGTTCGATTACATGGAAGGTGAATTGACGAGGTGGCAAGGAAATACAGCAGATGTACCAAAGACGATGCCATCTCAGAATTATGTTGTTTGCCCTGAGATCGAAAGATATTTCACGATCGCAGACCTTCTTCTGATGTCTGGAAGTCATGTTTTGATTGCTGGTGAACAAGGCGTCGGAAAAACAGCTTTTGTCAAGAATCTTTTACAACCGAGACAAAGGCTACAGCAGATCCTAATATCCCAAGGCCTGACATCTCAATACTTTCAACAAAAAATACAACGTCATGTGCAGGAAAACCAAAATCGCTTCCGCAGCAATCCTATGAAGGCACCTCCGCAGCAACAGAAGGGATTGGGGACGAACAAGAGCCTCTTTTTCATAGATGATGTTTCATTGGCAGCATTTGACAGTCATTGTAAAAACGCACAACCAACACTTGAGATCTTAAGACAGATGATATCTGAGGGTGGAATATATCATCAAGAAAGACAATATTTCCAACATCTCCCAAATCTTCAGTTTCTTGCTGCTTGCATCCCGCCTGATGGATATGGAAAAGGAGGGCCTAACCGAGAACTCAGTCCCAGATTAACAAGAAGAATGAATATGATAAATATGATGCCATTATCGGATGAGTCGTTGAGCACAATTTACACAAGTGTTTACAAAGCATGGCTTGAAGAATTCCCTGCTTATTCTCTCACACATATCGACCCACTGGCAAAGGCCCTTGCATATGCATCCGTTGACATGTATACCAAAATAAAGGAGAAGTTCAGTGCCACTCCAACCAACCCACAATATGTATTTTCACATCATGATCTAGCTCGTATTGCCAAAGGTGTTTTCATTTACTCCCCAAAGAGTAGACTCAGGGCGAGAAAGTCTGGACATGGATTTGCAAAAGGAGATTTAAGTGTAAATCAGAGCATGCCAGATCTGCAAATAAAGAACTCTATGGCAGCTGGATTGCCGGATCCAAGTTTATCAGTGGTTGACCTGCAAGCGTATCTCAACAAACATAACATCGATCAAACCCCAGCATCAGTTTCTCCTCTTATTCGGATCATCATTCGACTTTGGTGCCATGAAACTTGTCGTTCATTTTACGATCGAATAATAAACACCGAGGATAAAAAATGGGTTGCAACTACGTTGCAGAAGACTGTGGTTGTAAAATTTTGTGGCGAAAAACCTTCTTTAGTCAACAAACAAGGAATTTTGTCAAGAGAGGCCTCAACAGTGGATAAAAAGAATAGCAAAAACAGAGTGAAATTCAAGGATATTGAATCAACACGTCAGGCAGATTACCACGGTCCCCTAATTTCACTCAAGCATCTTATGGGAGACGATCAAGCACTTGCTACGATAACGTTCTCAAAGCATTTGTTTATCTACGGAACACGTGGGATAGAAGGAGCTGGAGAACACGAGAAAGGATATGTTGAATGTCTTGATCATCATTTAGAAGAAGCGCTTCGTAAATCGTTGAATCTGATCAAAACAGCAGAAGGAGAACGATTGGATTTGGTGTTGTATAAAGAGGCATTGTATCATGCTGCTAGAATCAGTCGTGTTTTGTCTATGCCTGGTGGTCATGCATTGTTGGTTTCTCTAAATGGTCATGGCCGTGCTAACATTGTCAAACTCGTGGCAAAACTCGCAAATATCAAAATAATGACAGTGAGTGAATGTGCTCTTAAAAACCAGACGAAATTCCGTTCAATTCTCAAAGATGCATGCTATGTTGCGGGGCTGCTTGGGAAACCAATTATTGTGTACGTTCCAGAAGGTCTTAACAAAGAAGGAATGCAGGATGTGGCAGCTATGCTTGTTGAAGGAACCTGTCCAGGGCTTTACACACCGGAAGAACTTATTGCCATTGGAAATCATTTACTTCCTGGAGGACAAGTTGGTCAAAGACGAACCGAGAACAAAATGGTTGCGCAGGAGCGTTTTTTAAGGAGAATCAGATCAAACATTCATATTGTCATCTGCGCAATGCATTTGTCATTGAACACCATCATCAAGGAATATCCAAGCATATTGTCACGTGCAGCTTGTGTTGACTTTTATAATGAATGGAGTGTTGACATTTTGAAAGAGATAATGACAGTGAGTGAATGTGCTCTTAAAAACCAGACGAAATTCCGTTCAATTCTCAAAGATGCATGCTATGTTGCGGGGCTGCTTGGGAAACCAATTATTGTGTACGTTCCAGAAGGTCTTAACAAAGAAGGAATGCAGGATGTGGCAGCTATGCTTGTTGAAGGAACCTGTCCAGGGCTTTACACACCGGAAGAACTTATTGCCATTGGAAATCATTTACTTCCTGGAGGACAAGTTGGTCAAAGACGAACCGAGAACAAAATGGTTGCGCAGGAGCGTTTTTTAAGGAGAATCAGATCAAACATTCATATTGTCATCTGCGCAATGCATTTGTCATTGAACACCATCATCAAGGAATATCCAAGCATATTGTCACGTGCAGCTTGTGTTGACTTTTATAATGAATGGAGTGTTGACATTTTGAAAGAGGTTGCGGAAAGATGGCTAATTGCAAAAGGAAAGAACGAGTTTTTCTACAAAGTTCCTTGGAATCTTGACGAAAGAGATCGCCAGCTCACTTCTATTTATGACGTAATGGCCAATATACATTTAAGCTCAAGAGCAGCGTTAGACAAAGATTTCAGAAGGCTTGGATTGGAAGTTTTCTCCCCATTGAAATTCGTGGAATTGATTGACATGTTTAGGACCTTATGCAATGTGATCTGCAATGAGAGAGAGGAAGAATTATCTCAGCTGACACGTGCAACTGACAAAGTTAAAGAAGGCAAGAAATATATCGAGGATACGGAAAAGAGTATATCTGAATTAACACCAGTATTGGAGAAAGCAAGACTAGCCCTGAAAACAGCCGACGCAGAAGTGAAATTGGCAACAAATAAGTATCATGATTCAAAAGAAGCTTGTGCTGATCAGCAAAATGAAATCGAGAAACTAAAAATACCGTTACAGCGTCTTAATGATGAGGCCAAAGAGCAATTTGGCAAGGTAACTCCATTGTATGAAGCAGCTACGGCTACATTACAGTCTTTGAGCATTTACGTCGTGGAAGAAGTGAGAAGTTACAGAAGTCCACCTGAAGGTGTGAAATTTGTCACCGACACCTTATGTCTGATGTTTGGCAAGGAGGCTAGCTGGGAAGTAGCCAAACGTTTGTTGATTCGTGAGAATTTCTTCTATGATTTGTTATTCTACAACAAAGATGAAGTTTCTGATTGGTTATTCAAGAAGCTGGAAATTTATTACAAATCAGAAAACTCCGATCCAAAAACTCTGAGCTCCATCAGTCAAGCAGCAAAATTATTTTCTGTATGGATCAGAACTGTTTACGAGTATTGCCGCATATCACGATTATTACGACCAAAACAGCTGGAGATCTTGGAGGCAGAAAACAAACTGAAGAAAGCTAGAGCATTGCTTGGAAAGTTAAGAGTCGATTCACATCATttgaagattgaattagaaaatgcaatcgaaattTACAAAGACTGCCTGAAAGAAACTAAGAGTTTAGAGAAACAATTCCAGGTACGAATCCCACCTTAGTTATTATGATCTAACTTGTTTTTATTTCTAATTTCGCATTTCTATTTTGTCCTCAACAGTATCGAACACGTTTTACTGTACTGATGGTCACCTCAGCATTGCTGATTGTATCACCCATATTGCTACATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12775 all species →	AAA_7	P-loop containing dynein motor region	Domain	Interproscan
PF12777 all species →	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan
PF12780 all species →	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF17852 all species →	Dynein_AAA_lid	Dynein heavy chain AAA lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024743 all species →	Domain	Dynein heavy chain, coiled coil stalk	Interproscan
IPR024317 all species →	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR041466 all species →	Domain	Dynein heavy chain, AAA 5 extension domain	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45703 all species →	DYNEIN HEAVY CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold155.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.