Gene detail

Detailed information of scaffold16.g36.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold16:728080...763515
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold16.g36.t4

gtaagaaaaccaacttgcgggatatatactttgcaaagcctacagttggattttccaccattccaacgtctaattcgttttttgaacataggaaggctgtttgattgttttatttcttgcggtaaatgctgccacaggttatttccaaggtaagtaatggactcaactacaaaggacgcagttcgttaactaagagccactctatctccctgccaagcattgaaacctcttcggacacaaacaaaccaaatactacaaaaagaccagcgagtgatacaaagagaaagaacttcaaagcaaagccacctccgcacactacctctgaatctccagatgtcgcaaaatgcccaagttcagataaccttgacatgggtttgtcagttcatccaatcacaacgcaacataaaaaccagcaaggccctaccaaagtagaaaatgttcatggaaagaaagtcatcattgattataaagcgatgttaaacaatgcaataagtggaccacatttgacagatctggctccatctgaaaagttattgaagccgcttggaagtattccgcatctcactggcgaatggagggacctggcagcagtagtcagcaaggatatttatctagaaaatccaaatgtcacttggaacgatatcattggcttagatgaagctaaaagattggttaaagaagctgttgtttatccaattaagctagccaagttggatgggtcaaggatatgcaagcaaaatatcactgtaaatgttgtatgcattgaaggtgcatggatctgcaaggcaaaagaatatgcccttttgcaaacaattgttacccttttcacattaatacctattcagggattgcaaaagttagttggacaagacaaagcaatagaaaataacatatacccacaactgttcactggcatattatcaccatggaaaggtttactgctatatggaccaccaggtactggtaaaacattactggccaaggcagttgcaactgagtgtaatacaacgttcttcaatatatctgcttcaacaatcgtcagcaaatggcgagatgacttctactttgagacagactatagacttgtcgtgattttaccctattatgttttggtattcgtcaaactctgtggtttttttagtggagagcacgagggaagtcgtagaatgaagacagagctactggtacaaatggatggactggcaaaatcagacgatttagtttttctattagcagcatcaaatataccatgggaattagatcatgcaatgttaagaagacttgagaaacgtattattgtagacctaccgacggtgcaagcaaggaaggcgatgtttgaacactacctacctccagaaatctccaacaaaccaaatgctatcaaaatgacttcaagattagattatgattttcttgcaaaggcgactgagagctattctggttcagatatttgcttattatgtaaagaggctgcgatgagacctgtccgaaaaatttttgatatattagaaaaccgcgagaaaggaggcagcaacgaaaacatgatatcttcgctgagtatcgatccagtcacgaccgttgatgtgcacattgcattagagaggactaaaccatcaaccgcaaaactgaaacccaagtatgaggcatggcagaaggaatttgaatcggtgtagtagtctgtaatccagtatttttataccatatttttactagagttggtaaatccaaacttgaagcagtatagtaaattgtaaattgtatgaagtgaatttaaaatatataaactgaaattgccctggttttaacgacaaagtggatggatttgccccaagtctacttctaataccaagcaaaggtattacgggaaattcgaaggagttagcaaaaatctttgcattccctgtgataaattttgcctgacggagagatagactcggagcaagtcttgaaatttgaaaaccgaacaaattggaaattgagtttcagtggatcatttggtgagcacaggcgtacaatttttaacattgaatacgctgattctaccgcgtgctttttaatatattgactatttttaa

Transcript

scaffold16.g36.t4

gtaagaaaaccaacttgcgggatatatactttgcaaagcctacagttggattttccaccattccaacgtctaattcgttttttgaacataggaaggctgtttgattgttttatttcttgcggtaaatgctgccacaggttatttccaaggtaagtaatggactcaactacaaaggacgcagttcGTTAACTAAGAGCCACTCTATCTCCCTGCCAAGCATTGAAACCTCTTCGGACACAAACAAACCAAATACTACAAAAAGACCAGCGAGTGATACAAAGAGAAAGAACTTCAAAGCAAAGCCACCTCCGCACACTACCTCTGAATCTCCAGATGTCGCAAAATGCCCAAGTTCAGATAACCTTGACATGGGTTTGTCAGTTCATCCAATCACAACGCAACATAAAAACCAGCAAGGCCCTACCAAAGTAGAAAATGTTCATGGAAAGAAAGTCATCATTGATTATAAAGCGATGTTAAACAATGCAATAAGTGGACCACATTTGACAGATCTGGCTCCATCTGAAAAGTTATTGAAGCCGCTTGGAAGTATTCCGCATCTCACTGGCGAATGGAGGGACCTGGCAGCAGTAGTCAGCAAGGATATTTATCTAGAAAATCCAAATGTCACTTGGAACGATATCATTGGCTTAGATGAAGCTAAAAGATTGGTTAAAGAAGCTGTTGTTTATCCAATTAAGctagccaagttggatgggtcaaggatatgcaagcaaaatatcactgtaaatgttgtatgcattgaaggtgcatggatctgcaaggcaaaagaatatgcccttttgcaaacaattgttacccttttcacattaatacctattcagggattgcaaaagttagttggacaagacaaagcaatagaaaataacataTACCCACAACTGTTCACTGGCATATTATCACCATGGAAAGGTTTACTGCTATATGGACCACCAGGTACTGGTAAAACATTACTGGCCAAGGCAGTTGCAACTGAGTGTAATACAACGTTCTTCAATATATCTGCTTCAACAATCGTCAGCAAATGGCGAGATGACTTCTACTTTGAGACAGACTATAGACTTGTCGTGATTTTACCCTATTATGTTTTGGTATTCGTCAAACTCTGTGGTTTTTTTAGTGGAGAGCACGAGGGAAGTCGTAGAATGAAGACAGAGCTACTGGTACAAATGGATGGACTGGCAAAATCAGACGATTTAGTTTTTCTATTAGCAGCATCAAATATACCATGGGAATTAGATCATGCAATGTTAAGAAGACTTGAGAAACGTATTATTGTAGACCTACCGACGGTGCAAGCAAGGAAGGCGATGTTTGAACACTACCTACCTCCAGAAATCTCCAACAAACCAAATGCTATCAAAATGACTTCAAGATTAGATTATGATTTTCTTGCAAAGGCGACTGAGAGCTATTCTGGTTCAGATATTTGCTTATTATGTAAAGAGGCTGCGATGAGACCTGTCCGAAAAATTTTTGATATATTAGAAAACCGCGAGAAAGGAGGCAGCAACGAAAACATGATATCTTCGCTGAGTATCGATCCAGTCACGACCGTTGATGTGCACATTGCATTAGAGAGGACTAAACCATCAACCGCAAAACTGAAACCCAAGTATGAGGCATGGCAGAAGGAATTTGAATCGGTGTAGTAGTCTGTAATCCAGTATTTTTATACCATATTTTTACTAGAGTTGGTAAATCCAAACTTGAAGCAGTatagtaaattgtaaattgtatgaagtgaatttaaaatatataaactgaaattgCCCTGGTTTTAACGACAAAGTGGATGGATTTGCCCCAAGTCTACTTCTAATACCAAGCAAAGGTATTACGGGAAATTCGAAGGAGTTAGCAAAAATCTTTGCATTCCCTGTGATAAATTTTGCCTGACGGAGAGATAGACTCGGAGCAAGTCTTGAAATTTGAAAACCGAACAAATTGGAAATTGAGTTTCAGTGGATCATTTGGTGAGCACAGGCGTACAATTTTTAACATTGAATACGCTGATTCTACCGCGTGCTTTTTAATATATTGACTATTTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050304 all species →	Family	Microtubule-severing AAA ATPase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074 all species →	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140603 all species →	Molecular Function	obsolete ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07767	KATNA1; katanin p60 ATPase-containing subunit A1	EC:5.6.1.1	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.