Gene detail

Detailed information of scaffold16.g5.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold16:41886...81161
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold16.g5.t1

acggtagactacaaataatgtttgtcttatcttttagttgtcagcaagttgtggcccacaaggatttgctgacatcgagaagcaaagggtagagctggcaatttcctctgctgcagcacttagtttcatttcaaactgtgaattgcctgtagacatgtttgaaaatacattgcagtcactagatcttagcagcaacaatcttgaaatggtcccggagacagtatctatgctgactgcgcttggtgaactgaatttaagcaataatcctcgaataacaagattgcctgctgagttaggaaaactacgaaatatttggaatctcaaattggacaatttaagtctgcaagatctaccgcaagatttgagaggtccaggcactgcaaagaaaactcttgcactcttgcgagcaaaattacgcaaatccgtcccattcaaacgaatgaaattgatggtggttggccttgagggccgtggaaaaaccactcttctcgcaacgttgcaagggaagaggccgccagctgaaaatgtcgcaaccgttggtatttctgtcgagcaatggacattgcaaccaaatgcaaatcaaggaagattcaggttttgggcatcggcatcaccagctgaacaagagattgttttcagcacatgggatctcgccggacagcatgtttactatgcaacacatcagtgcttcctgacaagtaacacgttatatctcgttgtgtggaatgtacaacatggaaaagaagggcttgatcgacttgcgccgtggctgctgaatatccaggcacgagccccgaagagccaagtgatagtagtcgggacgcatttggataagctaccacagtcaaacaggagggagcatctttcatcgcttgcgtcggacctgttcaagaagtttggcaagaagggatttccttgtatcagtggtaacgttttcatatcaaacacaacaggagaaggcttgccgaatttgagggatgtcatttacaaagttgcgttaaaaatgcaagactcgaatttacatgagccaatgattggcaaaaaggtcccattgagctatgtacagctttacgatgctgtcactaaagaagcagaccttagagcaactgcaaaagagccgcctattcttaccacagacgaattcttgcaattggctaaaggtaatcctgacaatgatattctggatcaagatgaactccatcaagctgccagatttctccatgaccatggtgtgttactacattacaatgaccacatacgaggtctgaacaatttatacttcatcgacccatcatggctatgtgacatgatagccctggttgtgacagtgcgacagaaaaacccttttgtgaaagacggttacatcaaagcttcagatatcgattttgtcttgaataatccacgcttgcctgcagagtttaggcaacagtatttgcagattttggagagatttgagattgcattacgattagatgatgaacgcatattgataccttcaatgctgccaagagaaagaccgtctgttcttatggaagattctccaaggtctcaatacggtgacagtcaaaaagaccgtttgagcaaattggtgagcttaccgagagggcgagctgcaacagaaagaagtttagccattgaccatatactcaggaattatcatttgggatatgttccagctggtttctggagtcgactcatcgcccgtttgataattgcagtacataaatggggaatgattgtatccgacccagagagtgaggaacaagaggccagtgaacaaccgagtatcaatcctgcagcacataaaggtgtcactctaacaaaaaattactccatgatttattggagagaaggaatcctggtcatttatgaaatgggaaaatttttgatcgaatctttcacagatcattatgaagacatgcaatatggaaatgaaggtgtcgcaataactgtcaagtctgattttggagatttttcagtcatgggatttatcgttgatcaaattgatagactcattaatgaatggtatccaggtttggaggacttggatgaatatggcatgatgacggttcaaaggatgattccatgtccaacatgtgcaatgagatttaagaaaggcaaactctcaaagtatcttttagatagtcattggcttgctgattttgcacatcatttcagaaaccctgaattcgtaaagcaattgtcattaacggtgtgtgctatggcagctgttaaccatgaagaattacaatgctctatgcaccccgatgaaccggttcctttagcacatctagtgccagatctcttgctgtctgatctacctcattctttgacgatggataaacaaaagcttgattttgatccaagtgatgacacccgtcttggaagcggaggagcaggagaagtttataaggcacgctacaatggccacccaatcgccatcaagaggtttcattcaacagtcaagtcaagccatcttcatcataattatgactcaggcagtcctgctgatacttcaagggctgatacaacaaccagcagtaattcaacgttgtatattccaactgaacaaagtatctgtgatcaactagaagaaggaaaagtcatcaaatcgttttgggaactgcggcaagaggttgctgtcctctgtcggctacaacatccattcatcattaagctactcggtgtttgcaggataccattatgctttggactcgaactggcaccaaaaggaggcttgtattctattttggaagacattgcccatgaacgtgacttggtcattcaagcaaatccaaacaacgcaccgtgcatgggaagtgtattgggaagaaagctctcgtataagattgctttacaggtagcccatgctcttctatatcttcatgactcagaaattgtatatcgtgatctcaaatcagacaatgttttagtttggtctttagatgaaacagcgactgtcaatgtcaagttgtctgattatggaatatcttgttttgcaacgccacaaggagtacttggtgagggtggcacacctggttttcaggccccagaagtaagatatggctgtgcatacgatgagaaggttgacatattttcatacgcaatttggctgtacgaacttctcactggatgcagaccttttcgagaaaacagaacatcagccgagattcgcaaggcagttcactctggcgcaaggccttctttgcaaaacgttcatgttgacagtaaaatgccgttcttagaagcattgatgcaagattgctgggtgaatgatcctgaatctcgaccccctgcttttgatatcacgcaaaggatggaagatccacgatttctttgcttacgtaacagctttccaaaagtcaatcaatacttggaacatgtcacatgcttattgcctcttggcaatgaagaccaaggccttgatgtgttaccgtatcagatgacgagtaacagcgcacctccagattttggagacaagttacttctctggtgtggagacaagaacgacaggaaatttgttattatggatactgagactggctctatacagaatgacataccatcccctggcccaagagttctgtgtgctgttatcgtagggcaaaggatttggttgggaacagagggctgccagatcgatgtttttggacgatattgttggcaaattcctcgtatactgtggtcaatcggaaccaaaggcccagttctggacttacttgttgagaacgataaccctatggatccacatcgaatatttgcctcacttgcaaacggcactttactgactgctgcagcgtctcgaatcacaagaggagttagacaaagtgttgaatatggaacgcaatgaatggagcgaacaaacagttgtatacttagcaaatgaaggaaaaccagcaaagagcttggtattgactaaaggtggcaaagaatt

Transcript

scaffold16.g5.t1

ACGGTAGACTACAAATAATGTTTGTCTTATCTTTTAGTTGTCAGCAAGTTGTGGCCCACAAGGATTTGCTGACATCGAGAAGCAAAGGGTAGAGCTGGCAATTTCCTCTGCTGCAGCACTTAGTTTCATTTCAAACTGTGAATTGCCTGTAGACATGTTTGAAAATACATTGCAGTCACTAGATCTTAGCAGCAACAATCTTGAAATGGTCCCGGAGACAGTATCTATGCTGACTGCGCTTGGTGAACTGAATTTAAGCAATAATCCTCGAATAACAAGATTGCCTGCTGAGTTAGGAAAACTACGAAATATTTGGAATCTCAAATTGGACAATTTAAGTCTGCAAGATCTACCGCAAGATTTGAGAGGTCCAGGCACTGCAAAGAAAACTCTTGCACTCTTGCGAGCAAAATTACGCAAATCCGTCCCATTCAAACGAATGAAATTGATGGTGGTTGGCCTTGAGGGCCGTGGAAAAACCACTCTTCTCGCAACGTTGCAAGGGAAGAGGCCGCCAGCTGAAAATGTCGCAACCGTTGGTATTTCTGTCGAGCAATGGACATTGCAACCAAATGCAAATCAAGGAAGATTCAGGTTTTGGGCATCGGCATCACCAGCTGAACAAGAGATTGTTTTCAGCACATGGGATCTCGCCGGACAGCATGTTTACTATGCAACACATCAGTGCTTCCTGACAAGTAACACGTTATATCTCGTTGTGTGGAATGTACAACATGGAAAAGAAGGGCTTGATCGACTTGCGCCGTGGCTGCTGAATATCCAGGCACGAGCCCCGAAGAGCCAAGTGATAGTAGTCGGGACGCATTTGGATAAGCTACCACAGTCAAACAGGAGGGAGCATCTTTCATCGCTTGCGTCGGACCTGTTCAAGAAGTTTGGCAAGAAGGGATTTCCTTGTATCAGTGGTAACGTTTTCATATCAAACACAACAGGAGAAGGCTTGCCGAATTTGAGGGATGTCATTTACAAAGTTGCGTTAAAAATGCAAGACTCGAATTTACATGAGCCAATGATTGGCAAAAAGGTCCCATTGAGCTATGTACAGCTTTACGATGCTGTCACTAAAGAAGCAGACCTTAGAGCAACTGCAAAAGAGCCGCCTATTCTTACCACAGACGAATTCTTGCAATTGGCTAAAGGTAATCCTGACAATGATATTCTGGATCAAGATGAACTCCATCAAGCTGCCAGATTTCTCCATGACCATGGTGTGTTACTACATTACAATGACCACATACGAGGTCTGAACAATTTATACTTCATCGACCCATCATGGCTATGTGACATGATAGCCCTGGTTGTGACAGTGCGACAGAAAAACCCTTTTGTGAAAGACGGTTACATCAAAGCTTCAGATATCGATTTTGTCTTGAATAATCCACGCTTGCCTGCAGAGTTTAGGCAACAGTATTTGCAGATTTTGGAGAGATTTGAGATTGCATTACGATTAGATGATGAACGCATATTGATACCTTCAATGCTGCCAAGAGAAAGACCGTCTGTTCTTATGGAAGATTCTCCAAGGTCTCAATACGGTGACAGTCAAAAAGACCGTTTGAGCAAATTGGTGAGCTTACCGAGAGGGCGAGCTGCAACAGAAAGAAGTTTAGCCATTGACCATATACTCAGGAATTATCATTTGGGATATGTTCCAGCTGGTTTCTGGAGTCGACTCATCGCCCGTTTGATAATTGCAGTACATAAATGGGGAATGATTGTATCCGACCCAGAGAGTGAGGAACAAGAGGCCAGTGAACAACCGAGTATCAATCCTGCAGCACATAAAGGTGTCACTCTAACAAAAAATTACTCCATGATTTATTGGAGAGAAGGAATCCTGGTCATTTATGAAATGGGAAAATTTTTGATCGAATCTTTCACAGATCATTATGAAGACATGCAATATGGAAATGAAGGTGTCGCAATAACTGTCAAGTCTGATTTTGGAGATTTTTCAGTCATGGGATTTATCGTTGATCAAATTGATAGACTCATTAATGAATGGTATCCAGGTTTGGAGGACTTGGATGAATATGGCATGATGACGGTTCAAAGGATGATTCCATGTCCAACATGTGCAATGAGATTTAAGAAAGGCAAACTCTCAAAGTATCTTTTAGATAGTCATTGGCTTGCTGATTTTGCACATCATTTCAGAAACCCTGAATTCGTAAAGCAATTGTCATTAACGGTGTGTGCTATGGCAGCTGTTAACCATGAAGAATTACAATGCTCTATGCACCCCGATGAACCGGTTCCTTTAGCACATCTAGTGCCAGATCTCTTGCTGTCTGATCTACCTCATTCTTTGACGATGGATAAACAAAAGCTTGATTTTGATCCAAGTGATGACACCCGTCTTGGAAGCGGAGGAGCAGGAGAAGTTTATAAGGCACGCTACAATGGCCACCCAATCGCCATCAAGAGGTTTCATTCAACAGTCAAGTCAAGCCATCTTCATCATAATTATGACTCAGGCAGTCCTGCTGATACTTCAAGGGCTGATACAACAACCAGCAGTAATTCAACGTTGTATATTCCAACTGAACAAAGTATCTGTGATCAACTAGAAGAAGGAAAAGTCATCAAATCGTTTTGGGAACTGCGGCAAGAGGTTGCTGTCCTCTGTCGGCTACAACATCCATTCATCATTAAGCTACTCGGTGTTTGCAGGATACCATTATGCTTTGGACTCGAACTGGCACCAAAAGGAGGCTTGTATTCTATTTTGGAAGACATTGCCCATGAACGTGACTTGGTCATTCAAGCAAATCCAAACAACGCACCGTGCATGGGAAGTGTATTGGGAAGAAAGCTCTCGTATAAGATTGCTTTACAGGTAGCCCATGCTCTTCTATATCTTCATGACTCAGAAATTGTATATCGTGATCTCAAATCAGACAATGTTTTAGTTTGGTCTTTAGATGAAACAGCGACTGTCAATGTCAAGTTGTCTGATTATGGAATATCTTGTTTTGCAACGCCACAAGGAGTACTTGGTGAGGGTGGCACACCTGGTTTTCAGGCCCCAGAAGTAAGATATGGCTGTGCATACGATGAGAAGGTTGACATATTTTCATACGCAATTTGGCTGTACGAACTTCTCACTGGATGCAGACCTTTTCGAGAAAACAGAACATCAGCCGAGATTCGCAAGGCAGTTCACTCTGGCGCAAGGCCTTCTTTGCAAAACGTTCATGTTGACAGTAAAATGCCGTTCTTAGAAGCATTGATGCAAGATTGCTGGGTGAATGATCCTGAATCTCGACCCCCTGCTTTTGATATCACGCAAAGGATGGAAGATCCACGATTTCTTTGCTTACGTAACAGCTTTCCAAAAGTCAATCAATACTTGGAACATGTCACATGCTTATTGCCTCTTGGCAATGAAGACCAAGGCCTTGATGTGTTACCGTATCAGATGACGAGTAACAGCGCACCTCCAGATTTTGGAGACAAGTTACTTCTCTGGTGTGGAGACAAGAACGACAGGAAATTTGTTATTATGGATACTGAGACTGGCTCTATACAGAATGACATACCATCCCCTGGCCCAAGAGTTCTGTGTGCTGTTATCGTAGGGCAAAGGATTTGGTTGGGAACAGAGGGCTGCCAGATCGATGTTTTTGGACGATATTGTTGGCAAATTCCTCGTATACTGTGGTCAATCGGAACCAAAGGCCCAGTTCTGGACTTACTTGTTGAGAACGATAACCCTATGGATCCACATCGAATATTTGCCTCACTTGCAAACGGCACTTTACTGACTGCTGCAGCGTCTCGAATCACAAGAGGAGTTAGACAAAGTGTTGAATATGGAACGCAATGAATGGAGCGAACAAACAGTTGTATACTTAGCAAATGAAGGAAAACCAGCAAAGAGCTTGGTATTGACTAAAGGTGGCAAAGAATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold16.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.