Gene detail

Detailed information of scaffold160.g3.t7 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold160:59969...87384
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold160.g3.t7

atattaatctaaacaaaaaaaataaagctgctcttccaaggggttgtgtttgcgtcgctctacctcaagaactcccttaatcttactttaaaggagctcaatgttgcagagtctcgtatatgcttcgggatctcgttccaggtacttgctccctggtatccaaaagactttttgcagtattcaagacgaagccgaggaatttcgaaatcatcaatttttcttgtgttatatctcgaaatattcgacctaggagtgaatttatttttgaggttctctgggcagagtccattgttaattttgtatgtagtaattagcctgtcatattttattagattgcgtacatcgagccaatcacatacccagccatctttgtgccttgcgcattcgattagtctgcgtgccctgttttgcaacctctgtagggattccagttttgtgtttgacagacatccccaaatgacactgcaatatctcagatggctttcaattaatgctcgataaacagttgccaattgtttctgggaaaggatgtttttgagtttaaacatcgcccctaaaccgttttttatctttcgctttacggttttgagttgttcttcccaattcatgctttcgtctattatgacacctagatattttgttttttgaactctgcataatttttgatcttctacttcgaggtcagggaaatctttggctctgttcaattgttttggatgccctatcaacataaattcgcttttttcagcatttaggctaagtttgttttgcctcatccaggatgatacaagatcaagttcgccctttatgtcattaaagagctcgttgatctccatggaggcataagaaatgctcgtgtcatccgcgtacatatttggtttagattttttcaaacatttttcaaaatcattcatataaatgatgaaaagtaagggacccaaacacgacccctgtggtattccacactgtactaaacgcttgtttgacgatttaccttctacataacaatactgctctctcccggcaaggtatgaagtgaaccaaccgtgtgcaagatcagtgactccataggctgataacttcgataacagaacatcatggtcgacggtatcaaaggctttttttagatctaaaaatacgcttacattcgttttttgctcattgatgatttcaactaacaagacaatgtataagagtttagtggagcctttattgctgtcctctctggggaaatgcttgggtgactgccattgaaaaattgcagaaacttcataatcgggctgcaaaactcgtcaccaacattccatttgatgctactgctgtaccagttattcgagcgcttaaagacccattgtcaaccatgattctttgtgcgcagaatgaaaagcaagacaaagagaatttaggcccaaaacgacttttagataacacgaaagttgaatttggcgccaggaaggatcatgcgcatttcaatgaacaagtcataatgcacataatgacttgcttttccttggaacagttaatatcagatattgaggcactactaaaatatatcgatgggctagatgctccaggggctgttcttgtattcctacctggttggaatctcatttttgctattcacagatacctaactcagcatccagtattcgggactccaaaatatgttgtacttccgttacattctcaaatcccaagagaagatcagcgaaaagttttccagccagtgtcacctgggattcgaaagatcattttgtcaactaacattgcggaaacaagtattacaattgatgatgtggtattcgtgatagactcagttaaggcgaagatcaaactctttacatcacataacaatatgacaaattatgcgacggtttgggcttccaggacaaacatggaacaaaggcgaggacgtgcaggtcgtgtaagggaaggattttgctttcacttatgcagcagagcaagacatcaaaggcttgctgaacatgctactccagaaatattgaggactcccctgcatgagctggctttggatatcaaattattaaagttaggtgggataaaagagtttctaaataatgctttagagccacctccattggatgcagtaatggaatcgatcgtacttctgaaagttgaacaatatacacttccagatggcagagtcgtgaagttgagtggcgagaggttcgaagctccagaagcattactccagcctcatttgataaacgtggaaggagttggtgtcgctgagctcttgttcaacacaattaatgctgcggatgttgacacccgtccagaattctacaaacacattgtgctgtcaggggggactgttatgtacccaggtctccctattcgcctggaaagagaaatcaaacagctatatttggaaatggttttgaaaggagatgcaagcaggttatcgaaattcaaaataaggatagaagatccaccaaggagaaagcacatggtgttcttgggtggtgctgtcttagctgacattataaaagacaaagacacattctggatgacgcgacaagaatacgaagaaaaaggcctacgagttttggagaaactgggggtcgaacaaacttcaagcgaaatcgaacaaatctgaatatatctcaatcccctttgattatcttccattcgaacagttaaggttttagtattttctcaacaagaattgattagatgtaagacaggacgccatttttgtacaaggacaaatatctaggtaaaatttcttttgaagtttattccatctcgccgttaaaaccttggacaatgtttcaaagtatcggttgaacttgggagtatttgcgctaagggggttggacattatacgtaaaatgtaatgttcaactgccattatttccaaacctatagcggtgatgagttggcctaagtatagagatacacaacataaaacctgcaggtatttcaagggttggttatgccttgcgagactttcttcttttgcccatcacgaccatcacgggggatcgtaagaattacattgtagactaagaattttcgaaaaggtataagatttcagtttttcaatgtgggctgcaaatttctttgattttgttttctaatttcttggaagttcaaaatatgatgcatcaaaacttgaattctaaacattggaatttcgtattatttcaaacagcacacatggtttcatgggaaatggcgtctaaaccccaagtgacattcttgtatgtaggccttcagagttgctcagaattcctatcaatgattttgtataaaaaacgtaaaaaaaa

Transcript

scaffold160.g3.t7

ATATTAATCTAAACAAAAAAAATAAAGCTGCTCTTCCAAGGGGTTGTGTTTGCGTCGCTCTACCTCAAGAACTCCCTTAATCTTACTTTAAAGGAGCTCAATGTTGCAGAGTCTCGTATATGCTTCGGGATCTCGTTCCAGGTACTTGCTCCCTGGTATCCAAAAGACTTTTTGCAGTATTCAAGACGAAGCCGAGGAATTTCGAAATCATCAATTTTTCTTGTGTTATATCTCGAAATATTCGACCTAGGAGTGAATTTATTTTTGAGGttctctgggcagagtccattgttaattttgtatgtagtaattagcctgtcatattttattagattgcgtacatcgagccaatcacatacccagccatctttgtgccttgcgcattcgattagtctgcgtgccctgttttgcaacctctgtagggattccagttttgtgtttgacagacatccccaaatgacactgcaatatctcagatggctttcaattaatgctcgataaacagttgccaattgtttctgggaaaggatgtttttgagtttaaacatcgcccctaaaccgttttttatctttcgctttacggttttgagttgttcttcccaattcatgctttcgtctattatgacacctagatattttgttttttgaactctgcataatttttgatcttctacttcgaggtcagggaaatctttggctctgttcaattgttttggatgccctatcaacataaattcgcttttttcagcatttaggctaagtttgttttgcctcatccaggatgatacaagatcaagttcgccctttatgtcattaaagagctcgttgatctccatggaggcataagaaatgctcgtgtcatccgcgtacatatttggtttagattttttcaaacatttttcaaaatcattcatataaatgatgaaaagtaagggacccaaacacgacccctgtggtattccacactgtactaaacgcttgtttgacgatttaccttctacataacaatactgctctctcccggcaaggtatgaagtgaaccaaccgtgtgcaagatcagtgactccataggctgataacttcgataacagaacatcatggtcgacggtatcaaaggctttttttagatctaaaaatacgcttacattcgttttttgctcattgatgatttcaactaacaagacaatgtataagagtttagtggagcctttattgctgtcctctctggggaaatgcttgggtgactgccattgaaaaattgcagaaacttcataatcgggctgcaaaactcgtcaccaacattccatttgatgctactgctgtaccagttattcgagcgcttaaagacccattgtcaaccatgattctttgtgcgcagaatgaaaagcaagacaaagagaatttaggcccaaaacgacttttagataacacgaaagttgaatttggcgccaggaaggatcatgCGCATTTCAATGAACAAGTCATAATGCACATAATGACTTGCTTTTCCTTGGAACAGTTAATATCAGATATTGAGGCACTACTAAAATATATCGATGGGCTAGATGCTCCAGGGGCTGTTCTTGTATTCCTACCTGGTTGGAATCTCATTTTTGCTATTCACAGATACCTAACTCAGCATCCAGTATTCGGGACTCCAAAATATGTTGTACTTCCGTTACATTCTCAAATCCCAAGAGAAGATCAGCGAAAAGTTTTCCAGCCAGTGTCACCTGGGATTCGAAAGATCATTTTGTCAACTAACATTGCGGAAACAAGTATTACAATTGATGATGTGGTATTCGTGATAGACTCAGTTAAGGCGAAGATCAAACTCTTTACATCACATAACAATATGACAAATTATGCGACGGTTTGGGCTTCCAGGACAAACATGGAACAAAGGCGAGGACGTGCAGGTCGTGTAAGGGAAGGATTTTGCTTTCACTTATGCAGCAGAGCAAGACATCAAAGGCTTGCTGAACATGCTACTCCAGAAATATTGAGGACTCCCCTGCATGAGCTGGCTTTGGATATCAAATTATTAAAGTTAGGTGGGATAAAAGAGTTTCTAAATAATGCTTTAGAGCCACCTCCATTGGATGCAGTAATGGAATCGATCGTACTTCTGAAAGTTGAACAATATACACTTCCAGATGGCAGAGTCGTGAAGTTGAGTGGCGAGAGGTTCGAAGCTCCAGAAGCATTACTCCAGCCTCATTTGATAAACGTGGAAGGAGTTGGTGTCGCTGAGCTCTTGTTCAACACAATTAATGCTGCGGATGTTGACACCCGTCCAGAATTCTACAAACACATTGTGCTGTCAGGGGGGACTGTTATGTACCCAGGTCTCCCTATTCGCCTGGAAAGAGAAATCAAACAGCTATATTTGGAAATGGTTTTGAAAGGAGATGCAAGCAGGTTATCGAAATTCAAAATAAGGATAGAAGATCCACCAAGGAGAAAGCACATGGTGTTCTTGGGTGGTGCTGTCTTAGCTGACATTATAAAAGACAAAGACACATTCTGGATGACGCGACAAGAATACGAAGAAAAAGGCCTACGAGTTTTGGAGAAACTGGGGGTCGAACAAACTTCAAGCGAAATCGAACAAATCTGAATATATCTCAATCCCCTTTGATTATCTTCCATTCGAACAGTTAAGGTTTTAGTATTTTCTCAACAAGAATTGATTAGATGTAAGACAGGACGCCATTTTTGTACAAGGACAAATATCTAGGTAAAATTTCTTTTGAAGTTTATTCCATCTCGCCGTTAAAACCTTGGACAATGTTTCAAAGTATCGGTTGAACTTGGGAGTATTTGCGCTAAGGGGGTTGGACATTATACGTAAAATGTAATGTTCAACTGCCATTATTTCCAAACCTATAGCGGTGATGAGTTGGCCTAAGTATAGAGATACACAACATAAAACCTGCAGGTATTTCAAGGGTTGGTTATGCCTTGCGAGACTTTCTTCTTTTGCCCATCACGACCATCACGGGGGATCGTAAGAATTACATTGTAGACTAAGAATTTTCGAAAAGGTATAAGATTTCAGTTTTTCAATGTGGGCTGCAAATTTCTTTGATTTTGTTTTCTAATTTCTTGGAAGTTCAAAATATGATGCATCAAAACTTGAATTCTAAACATTGGAATTTCGTATTATTTCAAACAGCACACATGGTTTCATGGGAAATGGCGTCTAAACCCCAAGTGACATTCTTGTATGTAGGCCTTCAGAGTTGCTCAGAATTCCTATCAATGATTTTGTATAAAAAACGTAAAAAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00022 all species →	Actin	Actin	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004000 all species →	Family	Actin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050684 all species →	Biological Process	regulation of mRNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold160.g3.t7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.