Gene detail

Detailed information of scaffold162.g20.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold162:345971...373324
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold162.g20.t2

atatcatttgtaagctgatgtaaagttcaaagagctgatttatatttgagcgcgaattttatgtcactggttgatcaaagctccgctgttgttgttgtcacagtattttattttggagatttgctcctgaatgcggaagtgggactttgtgttgaaatccactattgaaatcgccttgttacacgaatcatttgcttcagcacaattgtggtcttggcgttgtttgataaagatacaatatcaatgatcacaaaatccgaggcttacggaaagagaaagtatggcagcttttcgttcaactgtaaagtcagaattcaaaataaagaatttctgctttggtctcaaatcctgcgaagatttcgtgcaatcccggccggtcgtgtaatcgaggctatcacgtggattggcctagccagcagaagaaaagagtgcagatagattgctaaatgcagccaagagtaaagaggaaatttgcagaaactagaacacgataaaatggggaaaccaaaaaagcaaagcaagaggttaacctgtgcaaagaaatacaaaattcagaagaaggtaagagagcaccatcgaaaagtaagaaaagaggacaagaataagtcaaaaagaaagtcacacaaagatcctggaatcccaaagaactatcctttcaaagagcaacttctcaagcagttggaagagagaaaattaagggctgaagaggagaaggaaagaaagaaaaatgaacgttttaaagaagtcaatagaaagcgtaaacttgaaatgttgcaaagagatgctcagaaaagagccaaggaatttgaaaagaagcaagagattttagggaaaggagaagagaaggctttgtcaaaaggatcagaaaactcaatgagggtatactacaaagaattcagaaaggttgtggaagctgctgatgtgttgatagaagtgttggatgcaagagatccaattgggtgtcgttgtcctcagattgaagaaatggtcaggaattctggtggaaataaacgtctggtattgctcttgaataaagttgatcttgttccaaaggagatcgttgagaaatggttgaaatatttcagagatgaactaccagcgctggcgttcaaggcatcaacacagtcacaaaaacaaaagctgggtcagagcaaagttcccgtggcacacgcctccaaagatatgttatcttcaacgggttctgttggtgcaagtactctcctaaaattgctcgggaattattgcaggaataaagatataaagacttcaattacagtgggcatagttggatatccgaatgttggaaagagcagtgtgataaacagtttaaagagatgcaaagcttgcggggtcggatcaactccaggtttcacaaagaatatgcaagaagtaattctagataaacatgtgaaattgttggatagtcctggaatcgtgatggcctctggctcaacagatgcgcaaatcattttaagaaattgcgtcaaggtggaccaacttgatgatcttgtgatgcccgtggaagctatcctgcgtcgatgcaacaaaaatcagattatggagaagtactgtgtaccagattattcaaatgcacaagaatttctctctcatttggcaagaagacttggcaagctcaagaaagagtcgcaaacaagcaatgttttaaagcagatccaaagggataattgtttactgtttaatgtctttaaaatcatcgaaaatgctaacgggcttgataacgggctatgctcgaaacgtcgtgcttatttcaattcgcatgaaagtgcttatattttactttgtttacttgtttatcatcgaaaatgctagtttgataccaaagtctgtctcgcattatacatttaaaggggctccgtcgtcaaaccctaaacaaatccgtaaactcgcacgtgtcggggattatccattgttcatccattgttctctgcagtttgtttggtggcttcacccaagccacaaaaaagtgaccgttaaaaatccacttatatccgagcaatcgtagaagatatgaatgtttggttttttccttagtgaagtaaaaggattaatgcccaaacagcaacttggcattttgaaaaaaatacgaaaatcctgtgtgatatcacctttcaaaaaactgcaaaaatcatcgttttgtttacattttgacgacggagcccctttaaactagctttgaatagcttgaaatccttcttgcccacctgaaataaattactgaaaaacaaacctgtatatcatca

Transcript

scaffold162.g20.t2

ATATCATTTGTAAGCTGATGTAAAGTTCAAAGAGCTGATTTATATTTGAGCGCGAATTTTATGTCACTGGTTGATCAAAGCTCCGCTGTTGTTGTTGTCACAGTATTTTATTTTGGAGATTTGCTCCTGAATGCGGAAGTGGGACTTTGTGTTGAAATCCACTATTGAAATCGCCTTGTTACACGAATCATTTGCTTCAGCACAATTGTGGTCTTGGCGTTGTTTGATAAAGATACAATATCAATGATCACAAAATCCGAGGCTTACGGAAAGAGAAAGTATGGCAGCTTTTCGTTCAACTGTAAAGTCAGAATTCAAAATAAAGAATTTCTGCTTTGGTCTCAAATCCTGCGAAGATTTCGTGCAATCCCGGCCGGTCGTGTAATCGAGGCTATCACGTGGATTGGCCTAGCCAGCAGAAGAAAAGAGTGCAGATAGATTGCTAAATGCAGCCAAGAGTAAAGAGGAAATTTGCAGAAACTAGAACACGATAAAATGGGGAAACCAAAAAAGCAAAGCAAGAGGTTAACCTGTGCAAAGAAATACAAAATTCAGAAGAAGGTAAGAGAGCACCATCGAAAAGTAAGAAAAGAGGACAAGAATAAGTCAAAAAGAAAGTCACACAAAGATCCTGGAATCCCAAAGAACTATCCTTTCAAAGAGCAACTTCTCAAGCAGTTGGAAGAGAGAAAATTAAGGGCTGAAGAGGAGAAGGAAAGAAAGAAAAATGAACGTTTTAAAGAAGTCAATAGAAAGCGTAAACTTGAAATGTTGCAAAGAGATGCTCAGAAAAGAGCCAAGGAATTTGAAAAGAAGCAAGAGATTTTAGGGAAAGGAGAAGAGAAGGCTTTGTCAAAAGGATCAGAAAACTCAATGAGGGTATACTACAAAGAATTCAGAAAGGTTGTGGAAGCTGCTGATGTGTTGATAGAAGTGTTGGATGCAAGAGATCCAATTGGGTGTCGTTGTCCTCAGATTGAAGAAATGGTCAGGAATTCTGGTGGAAATAAACGTCTGGTATTGCTCTTGAATAAAGTTGATCTTGTTCCAAAGGAGATCGTTGAGAAATGGTTGAAATATTTCAGAGATGAACTACCAGCGCTGGCGTTCAAGGCATCAACACAGTCACAAAAACAAAAGCTGGGTCAGAGCAAAGTTCCCGTGGCACACGCCTCCAAAGATATGTTATCTTCAACGGGTTCTGTTGGTGCAAGTACTCTCCTAAAATTGCTCGGGAATTATTGCAGGAATAAAGATATAAAGACTTCAATTACAGTGGGCATAGTTGGATATCCGAATGTTGGAAAGAGCAGTGTGATAAACAGTTTAAAGAGATGCAAAGCTTGCGGGGTCGGATCAACTCCAGGTTTCACAAAGAATATGCAAGAAGTAATTCTAGATAAACATGTGAAATTGTTGGATAGTCCTGGAATCGTGATGGCCTCTGGCTCAACAGATGCGCAAATCATTTTAAGAAATTGCGTCAAGGTGGACCAACTTGATGATCTTGTGATGCCCGTGGAAGCTATCCTGCGTCGATGCAACAAAAATCAGATTATGGAGAAGTACTGTGTACCAGATTATTCAAATGCACAAGAATTTCTCTCTCATTTGGCAAGAAGACTTGGCAAGCTCAAGAAAGAGTCGCAAACAAGCAATGTTTTAAAGCAGATCCAAAGGGATAATTGTTTACTGTTTAATGTCTTTAAAATCATCGAAAATGCTAACGGGCTTGATAACGGGCTATGCTCGAAACGTCGTGCTTATTTCAATTCGCATGAAAGTGCTTATATTTTACTTTGTTTACTTGTTTATCATCGAAAATGCTAGTTTGATACCAAAGTCTGTCTCGCATTATACATttaaaggggctccgtcgtcaaaccctaaacaaatccgtaaactcgcacgtgtcggggattatccattgttcatccattgttctctgcagtttgtttggtggcttcacccaagccacaaaaaagtgaccgttaaaaatccacttatatccgagcaatcgtagaagatatgaatgtttggttttttccttagtgaagtaaaaggattaatgcccaaacagcaacttggcattttgaaaaaaatacgaaaatcctgtgtgatatcacctttcaaaaaactgcaaaaatcatcgttttgtttacattttgacgacggagcccctttaaACTAGCTTTGAATAGCTTGAAATCCTTCTTGCCCACCTGAAATAAATTACTGAAAAACAAACCTGTATATCATCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08701 all species →	GN3L_Grn1	GNL3L/Grn1 putative GTPase	Family	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014813 all species →	Domain	Guanine nucleotide-binding protein-like 3, N-terminal domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR050755 all species →	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan
IPR030378 all species →	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089 all species →	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14538	NUG1, GNL3; nuclear GTP-binding protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.