Gene detail

Detailed information of scaffold164.g9.t1 in Morbakka virulenta

Genomic Location: scaffold164:497273...511494
NR annotation: XP_012554117.2, amino acid transporter AVT1D [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold164.g9.t1

GACGTGAGAATATGACAGATCATAACGTACACAAATACTGACCGATGACCGATTTTGTAAGCAATGTCAAATCTTCAAACAGCGAAAATGTACTCGAAAGACTAAAAAGGACCACAATATTTGCACCTGGTCTTTACAACTTTATCGTCACTAAAAGTGAACCAGGGCTGAATGACAGTACACTTGATGAGATCCGTAGAGATGAGTTTGAATTGCAAGGCAAACAAAGTAAATATACTCAAGAACATGCCAACAGTGCTGACACATGTTTACTGGCACCATACCAAACTACTAAAGGGTTAACATTATTTACGGCATCAGTATTTATCGCTGGCGAATTAGCCGGCACCGGAGTTTTAACTCTGCCTTCTGCTGTAGCACGTTCTGGATATGGAGGTACAGGCTTGATTTTGGTTGCTGTTTTATTGTCTGTGTATTGTGGCATTCTCCTAGGAAAATGCTGGGAAGTCGCAAAAGATGTAAAGGAGAACGACGAACCCTTCCAAGATCCATTCCCGTTCATTGGACAGGTGGCATTTGGCATGAAATGCCGACATATTGTTACCATATTTCTGCAACTCAATTTAGTCTTGACTTGCTTGGTATTTTTAACTCTATCCACAGAGACAATTTCTAGTTTACTGAACTTTCAAATTGCTTCAATATCAGCTGATGGACAGTTTCGTATTTGGCTAGTAATATGCACAATTATTATTTTACCGTTTTCTTTTCTTGGAACACCAAAGGACTTTTGTGGTATAGGGCTTGCAGCTTTGGGTACGACGATATTAGGTGTAATTTTCATTCTCATTAGACTTGGTGTTGTTATTTCTAAGGATGGACCTGCGCTTGAAAAAAACCCCATTTCGGCTGTGTCTGTGTTTTCTGCCTTTGGAACGCTCAtatttgcatttacagggggttctttgtttccaactatccaaacggacatgaaagatgccaaaaaatttccgcaagctgttatTCTTGGATATTCTTATGTTATTGCTTTATATGTACCAGTAGCTGTAACTGGATATTTTACTTTTGGGAAATATACAGAGACTAGCATCCTGATGAATTTATCCGCCTTTGACACTCGCCACAAAGCAAGACGGATTTTAGTTCCTTTGGCTGACATACTATTCGCAATACATTTGCTTTTGGCCTTTATCATGTTTTTAAATCCACTCGTGCAACAGCTGGAAGGATATTTCAAAATCACAGAATTCTCGTGGCGTCGCTGTGTGCTTCGCACTGTCGTGGTTTTTTCTATTCTTGTGTTGGCAGAAATTTTTCCCAGGTTTGGCCCAATAATTGATTTCATTGGCGGATTTATCACCACAATCTTGAGCTTTATTTTTCCAATACTTTTTTTTTATAAGCTTTATTATCCGATTTCCCTTCGCCACAGAATTATAATGGGACTGGCTCTTGCAACAAGCATCTTAGCATGTGTCTTCTCTACTTTTGCAGCCCTTTATAATATACAAAAGGTCTTCCGGACGATGTACTTCGGATAACAGTTCTGTTCGATTGTTATTATACTGTAGTAAGACCAAACGTGTAAATATTAAATTTTGACCAAGCTCTGTCTCAATTACTAGGGCGTTATAACAATCAATTTGTTATAAAATAGTAGTAAATTATAATAGTAATAAAGAGAGGGCTGGTCAAAATTTAATGCCCGTACATTTGAACTACACTGTAACAATTCAGTTTCCATAAGGGAGGGGTCTTCTTTGCGACCCAAACTATACCCTTCCATCAACAGACAGCTAAATTAACTTATGTGAATCCAAATGTAGATGTGGCCTTGCAAAACTATTCTGAAGTGATTGTTTTAGCTAAGTTATTTCTTTTGCTAAATTGTATTCGAGTTTTGTTTGAAAAGTACAGGAGAGAATTATTCGAGAATATGGCGCATCTTAATATTTATCTTCTTGGAAGGAATTCATATCTCATACGTTGAAACAGATAGTATTATCTAGAAACCATTAGAGTTGGCCTAAACTAACTCTTATCCAAGTGAGCTTTGCACGTTTTTCTGTACTACGTTGTAACAGCTATTAAAAAATTAAATCATGTTCTTCCATGTTGGGTGTATAAGCGATTAAAGTCTTCCAAATGGCATTTAATCCTAGGATGTCAAAATACAAACACCGTGTGACTTTCTGGAATATTTCTGAGGCGGTAGAAAGTCACACAGACATGCTTCATTTATAGAATTTGCCAAAAGGGTTGTAACCGAGGGTCCATTACTATTTGTTGGAAGCCCGGTTCGACTTCAGATGCATGAAAACACCTTTATCTCTCGTAAGTTTGGCAACATCTCTGTTGTCGTGCTCTAAGCTCTGAATATAGTCGATTCTTTATATTCTAAACTGTTATATCAGTGGATATTATCgcagacacatgcaggaaacggtctttgaaagacatagaaaaattcaggcttggggttgcagctaaagttttgcgtctacaaaagcaaaacttcccagaaatatccgcagcttcttaaagtatggtaaaaacagacattaacagggttttgattaagaaaaaagagaagaaaacactaataaacacatgcaggaaacggtctttgaaagacatagaaaaattcaggcttggggttgcagctaaagttttgcgtctacaaaagcaaaacttcccagaaatatccgcagcttcttaaagtatggtaaaaacagacattaacagggttttgattaagaaaaaagagaagaaaacactaataagtacgtttttgtcgctttcttgtattcaacacgctaaatattaaatattgataaaatctgtgatatttccttatttggagttgggatttgtaaatatgctcataAGTTTGGCAACATCTCTGTTGTCGTGCTCTAAGCTCTGAATATAGTCGATTCTTTATATTCTAAACTGTTATATCAGTGCCCGCCGGTAGTTCTCTAGAGGGTCTTTTGTCTTTTATGCCTGACAATAGTCTCGTTTTAGAATATCGCTTCACTGTTCTTCGAACCAACCAGTGCATTTCACTGTCACTTCAGTGCCATTTCGTAAATATGTCTGATTAATTCATTGATTTTATTAACCAATAGTACTTGTCAGTTCAACATCACTGCATAATGTAGACGGTTTCTTTGTGGAACGAAGTAATTCTGAAACTTTTCAATAATTTTGGTAAATTTATAGTCGAAACGTTTCTCTCCTGCCAGTTTTCCAGCGTGACTTTCTCCGCTCGGAAGATTCAGTTCAGTCATGATTTCTTGTCTCCTCCCCCATTAATATGTTCATATGCCATCTTGTTTGGGTATGGGCTTTTCTCCTTTTTTTATTGCTGTTAGGGTATCTCTGTTCTGCGAATTCTTGGTTTCCATTCGGTCAATTATATGATCTGGAACTATTCCAGTTCAACGAACTGGGAGACTGGATCTTCGCCATTGTCTCCAAATATCCATTATAAAATATTAAAATATGCTTTCAAGCCATTCTGTCAACTGCTCCATGTTGTATTTTCAAGGTTGCTAGTATATGTTTGTATATGTATATAAATATAAATACAGTATTTCAGTCTAAAAGAAAACATGCAGTGTATCTTGCGTGCGGAGTATTTTAAGAAAAACCTAGAGGTAACCTGTTTTGTAGTGTAGCTAAAAGTAGCAGCGGAAATTTTATATTTGGATTTGTTTACTCCAATTAAGTTAAGAAGAGCGTTATTTTTTAGCATGAACCATTCGAAGTTCGATTTCTATTTGACCGAAACTTGATGATACCTCCAAAGATTTAGCTCGGGTCAGAAATGTTGGTAGAAAGGTTTTAGGGGGAAACAATTGATAATTGACAATGTTCTGAAGTATTTATGGGTTTTTGTTTATAAAGAATCCACTTGATT

Protein

Uniprot

Uniprot term	Description
Q8GYS4	Amino acid transporter AVT1D OS=Arabidopsis thaliana OX=3702 GN=AVT1D PE=2 SV=1
F4IUW3	Amino acid transporter AVT1C OS=Arabidopsis thaliana OX=3702 GN=AVT1C PE=1 SV=1
Q8CH36	Neutral amino acid uniporter 4 OS=Mus musculus OX=10090 GN=Slc36a4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48017	OS05G0424000 PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala