Gene detail

Detailed information of scaffold165.g48.t1 in Aurelia aurita

Genomic Location: scaffold165:665475...696745
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold165.g48.t1

gttgttgtgctgtgctgtgctgctgagagcttccagaaaagaacaagcaatattgcaacaaaaaagaattcaactgttcaaggaagaatgtagcttttattggactcaacattgctgctgaagatcatattggagggagggatagaagaaaagcagtgcaaaatgtagcagagacgaacaaaatcaaacagaaggaaaaccgagaaagccaaaagaaagaaacgggatggcaaaaatcaacaggccaactccagaattcgacgaaaatccatatctagaatcatttgagagtctaacccttgattttggaccttcggagactgttcatcattgggtgaaactgcctgaatgcgatgagtttgttggctctaggagaagcaaacacacacttgttgcctggggagatgctctatatgtatttggaggtgataatggcaaacgaatgctgaatgatttgctgagatttgatgttaaagattgctcatggggcagagtagtgacaacaggatctccaccagcaccgagatatcaccattcagctgttgtatatgcaaatagcatgtttgtttttggaggatatacaggagacatttattcgaattccaacttgaggaataaaaatgatttgtttgaatatcgattcaatactgggcaatggcttgaatggcaacttcatggaaggattccagtggccagatcagcacatggagctgtagtatataaaaacaacatgtggattttcgctggatatgatggaaatgcaagactgaatgatatgtggagtatttgtttatcagacccctcaccaaactggcatgaggtgcaacagcaaggcaagaagccgccaacatgttgtaattttccaaccactgttgcaaaggattgtatgtatgtcttctctggacaaagtggtgcaaagattaccaatgacttgttccaattcaattttgcggatagaaaatggacaagaattgcaacagagcacctcctaaaaggaactccgcagccaccatcaagaagatatggccacacaatggttgcacatgatcgccatctttatgtttttggtggtgccgcagataatactttgccaagtgatttgttttggtatgatttggaaactcagacatgggatatcaatcaaccatcagctgacagtcagctgccaagtggaagattatttcatgatgctgatgtcattggcaataaaatgtacatattcggtgggacggtggataataacattcgaagtggtgaactttaccaattcacattttcaaattacccaagatgcactcttcacgatgactttggccgtatgctagacagcggacagttttgtgacacgcagtttgtttttgatgggaagaatccagttggagcacatgctgcaatcatatcagcccgttccccatatttgagacggaaactcattaatctgaagaaagctgctgaagaggaacagggagcaagtaattcattatcaaatgatattacgccgtatcgtgttgagattggaaatatcgacattcattcatttaaagtcattctgtggttcatctacactgatcagatatttcctctgataaaagatgaacatggaactgcaaccgaggtcatgagacttatgatggatgtttacagcctcgctttaaagtttcaacttgggcgtctggaacggctttgcactcactacatagaagcatcaattgcaacagaaaatgttcttgttgcccttgaatgtgcagaagagctagggcttgaatttatcaaggaatactgcatgaggtttatagtgcgagaagttcatttcaatgttattatcatgagttctgaatttgaggctttatcaaaatcattaatggttgagattattcgaagaaggcagctacaactgcaatatccattacctgaaccccaaagccccccaatcactaaagtatcaacacttaccgaagacatgatgtcccttttgagtggtgaagttgcatcagatttccaagacatggaattaatgctggatggaaacccaattcgagctcacaaacccatccttgcagcaagaagcagttacttcgaagcaatgtttcgatctttcaatcctgaaaacaacagagtaaatgtttctatcggagaaatggtgccctcacctcaatccttcgactcactactgcgatatgtttattttggtgacgtaactatgcctccagaagattcactctacttgttttcagcaccattttactatggatttactaacagcagattgcaggcttactgcaagcaaaatctagagatgaatgtctcagttaaaaacgttattcagatacttgaagcagcacacagcattggtgctatggacatggaaagacatgcattgagtattattgtacagcattttccaaaggttgcccgacttcaggatttcagacgattaaacaaagaactgttattggacatattagatgcaattgctgagtatatgcagtcaggacaaaactttgattttctcgcaatgcagcaacaggttgaaaatttggacatgagagaaattagggaccagagagagcaaagagatcaacgtgacaacagatagaacatcctcattggctcgtctctacattagacattgtagagctcagcatcaaatgagtataactctaaagtgtgtctaatgtctcctggccgggttgagaaatggctgtttaaatcaagagcaggtttccgtcaaccccgaacccagggtaataataggcggccagcggccagttgtatcatgtgcgctgaagagaggccgaagatactgatagccctggaatcgaggttgggtttccgtccgttacttccgggtgagtcaaaaaatgtttagacgtttgcaagcttatagctctcaaaccatttatcagactcctgtaaactgataataactgtgcagctaacatatcaacttagataagaatatctagtttgtcaaaagcgttgtcaaattacaagcgattttataaaaatgcttcatctcaaaaatccttcaaaacaggcctaaaattgttgattaattttgccagcaatttagctccacatctataacaatcaacctctatctgtctatcttattgcacagatatttactaggtatatacaaaggctgctgtatagtcgtataaacttgggactgtcattgggccatttttcgtcgattttcttattatcaggaggctggattgctaccagatagaccttttagctattctgcaaaagaatgtgaattgaacgatattttgatacattttgtaacattttcgaatgagcacaaaagtgaaagaagctgttacgccactcaatcgaacacttgatataaaaatgcatcaaaatatcgctcgatccagactcttttgtagtacagctaaaaggtctatttgatcaacaattttaggcctgttttgaaggattttgagatgaagcatttttataaaatcgcttgtaatttgaaaacgatactatcgattttaacaaactaaattttcttatctaagttgatatgttagctgcacaggtattatcagtttatggaaactgttaaatggtttgagagctacaagctttcaaacgtctgaacatttttttgactcgcccggtagtgagggctggattctatcggatgcatacttttgaatctgcaagtctttgtttgcatggtagtgacatgttgtggcaaactttgtcaaggaattatagggattttgtccaatgcagtagtagatatttgaagcaacacagaccaaatagcgctcgaaaagaactttcgatccatcattgaaaacgatttaacaatagaccttttagatattc

Transcript

scaffold165.g48.t1

GTTGTTGTGCTGTGCTGTGCTGCTGAGAGCTTCCAGAAAAGAACAAGCAATATTGCAACAAAAAAGAATTCAACTGTTCAAGGAAGAATGTAGCTTTTATTGGACTCAACATTGCTGCTGAAGATCATATTGGAGGGAGGGATAGAAGAAAAGCAGTGCAAAATGTAGCAGAGACGAACAAAATCAAACAGAAGGAAAACCGAGAAAGCCAAAAGAAAGAAACGGGATGGCAAAAATCAACAGGCCAACTCCAGAATTCGACGAAAATCCATATCTAGAATCATTTGAGAGTCTAACCCTTGATTTTGGACCTTCGGAGACTGTTCATCATTGGGTGAAACTGCCTGAATGCGATGAGTTTGTTGGCTCTAGGAGAAGCAAACACACACTTGTTGCCTGGGGAGATGCTCTATATGTATTTGGAGGTGATAATGGCAAACGAATGCTGAATGATTTGCTGAGATTTGATGTTAAAGATTGCTCATGGGGCAGAGTAGTGACAACAGGATCTCCACCAGCACCGAGATATCACCATTCAGCTGTTGTATATGCAAATAGCATGTTTGTTTTTGGAGGATATACAGGAGACATTTATTCGAATTCCAACTTGAGGAATAAAAATGATTTGTTTGAATATCGATTCAATACTGGGCAATGGCTTGAATGGCAACTTCATGGAAGGATTCCAGTGGCCAGATCAGCACATGGAGCTGTAGTATATAAAAACAACATGTGGATTTTCGCTGGATATGATGGAAATGCAAGACTGAATGATATGTGGAGTATTTGTTTATCAGACCCCTCACCAAACTGGCATGAGGTGCAACAGCAAGGCAAGAAGCCGCCAACATGTTGTAATTTTCCAACCACTGTTGCAAAGGATTGTATGTATGTCTTCTCTGGACAAAGTGGTGCAAAGATTACCAATGACTTGTTCCAATTCAATTTTGCGGATAGAAAATGGACAAGAATTGCAACAGAGCACCTCCTAAAAGGAACTCCGCAGCCACCATCAAGAAGATATGGCCACACAATGGTTGCACATGATCGCCATCTTTATGTTTTTGGTGGTGCCGCAGATAATACTTTGCCAAGTGATTTGTTTTGGTATGATTTGGAAACTCAGACATGGGATATCAATCAACCATCAGCTGACAGTCAGCTGCCAAGTGGAAGATTATTTCATGATGCTGATGTCATTGGCAATAAAATGTACATATTCGGTGGGACGGTGGATAATAACATTCGAAGTGGTGAACTTTACCAATTCACATTTTCAAATTACCCAAGATGCACTCTTCACGATGACTTTGGCCGTATGCTAGACAGCGGACAGTTTTGTGACACGCAGTTTGTTTTTGATGGGAAGAATCCAGTTGGAGCACATGCTGCAATCATATCAGCCCGTTCCCCATATTTGAGACGGAAACTCATTAATCTGAAGAAAGCTGCTGAAGAGGAACAGGGAGCAAGTAATTCATTATCAAATGATATTACGCCGTATCGTGTTGAGATTGGAAATATCGACATTCATTCATTTAAAGTCATTCTGTGGTTCATCTACACTGATCAGATATTTCCTCTGATAAAAGATGAACATGGAACTGCAACCGAGGTCATGAGACTTATGATGGATGTTTACAGCCTCGCTTTAAAGTTTCAACTTGGGCGTCTGGAACGGCTTTGCACTCACTACATAGAAGCATCAATTGCAACAGAAAATGTTCTTGTTGCCCTTGAATGTGCAGAAGAGCTAGGGCTTGAATTTATCAAGGAATACTGCATGAGGTTTATAGTGCGAGAAGTTCATTTCAATGTTATTATCATGAGTTCTGAATTTGAGGCTTTATCAAAATCATTAATGGTTGAGATTATTCGAAGAAGGCAGCTACAACTGCAATATCCATTACCTGAACCCCAAAGCCCCCCAATCACTAAAGTATCAACACTTACCGAAGACATGATGTCCCTTTTGAGTGGTGAAGTTGCATCAGATTTCCAAGACATGGAATTAATGCTGGATGGAAACCCAATTCGAGCTCACAAACCCATCCTTGCAGCAAGAAGCAGTTACTTCGAAGCAATGTTTCGATCTTTCAATCCTGAAAACAACAGAGTAAATGTTTCTATCGGAGAAATGGTGCCCTCACCTCAATCCTTCGACTCACTACTGCGATATGTTTATTTTGGTGACGTAACTATGCCTCCAGAAGATTCACTCTACTTGTTTTCAGCACCATTTTACTATGGATTTACTAACAGCAGATTGcagGCTTACTGCAAGCAAAATCTAGAGATGAATGTCTCAGTTAAAAACGTTATTCAGATACTTGAAGCAGCACACAGCATTGGTGCTATGGACATGGAAAGACATGCATTGAGTATTATTGTACAGCATTTTCCAAAGGTTGCCCGACTTCAGGATTTCAGACGATTAAACAAAGAACTGTTATTGGACATATTAGATGCAATTGCTGAGTATATGCAGTCAGGACAAAACTTTGATTTTCTCGCAATGCAGCAACAGGTTGAAAATTTGGACATGAGAGAAATTAGGGACCAGAGAGAGCAAAGAGATCAACGTGACAACAGATAGAACATCCTCATTGGCTCGTCTCTACATTAGACATTGTAGAGCTCAGCATCAAATGAGTATAACTCTAAAGTGTGTCTAATGTCTCCTGGCCGGGTTGAGAAATGGCTGTTTAAATCAAGAGCAGGTTTCCGTCAACCCCGAACCCAGGGTAATAATAGGCGGCCAGCGGCCAGTTGTATCATGTGCGCTGAAGAGAGGCCGAAGATACTGATAGCCCTGGAATCGAGGTTGGGTTTCCGTCCGTTACTTccgggtgagtcaaaaaatgtttagacgtttgcaagcttatagctctcaaaccatttatcagactcctgtaaactgataataactgtgcagctaacatatcaacttagataagaatatctagtttgtcaaaagcgttgtcaaattacaagcgattttataaaaatgcttcatctcaaaaatccttcaaaacaggcctaaaattgttgattaattttgccagcaatttagctccacatctataacaatcaacctctatctgtctatcttattgcacagatatttactaggtatatacaaaggctgctgtatagtcgtataaacttgggactgtcattgggccatttttcgtcgattttcttattatcaggaggctggattgctaccagatagaccttttagctattctgcaaaagaatgtgaattgaacgatattttgatacattttgtaacattttcgaatgagcacaaaagtgaaagaagctgttacgccactcaatcgaacacttgatataaaaatgcatcaaaatatcgctcgatccagactcttttgtagtacagctaaaaggtctatttgatcaacaattttaggcctgttttgaaggattttgagatgaagcatttttataaaatcgcttgtaatttgaaaacgatactatcgattttaacaaactaaattttcttatctaagttgatatgttagctgcacaggtattatcagtttatggaaactgttaaatggtttgagagctacaagctttcaaacgtctgaacatttttttgactcgcccggtaGTGAGGGCTGGATTCTATCGGATGCATACTTTTGAATCTGCAAGTCTTTGTTTGCATGGTAGTGACATGTTGTGGCAAACTTTGTCAAGGAATTATAGGGATTTTGTCCAATGCAGTAGTAGATATTTGAAGCAACACAGACCAAATAGCGCTCGAAAAGAACTTTCGATCCATCATTGAAAacgatttaacaatagaccttttagatattc

Protein

Gene family

Family type	Membership / link
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23330	LZTR1; leucine-zipper-like transcriptional regulator 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.