Gene detail

Detailed information of scaffold166.g1.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold166:1...16864
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold166.g1.t2

nnnnnnnnnnncatcctaaagaacggaaccatcagcctcgctctacactcaatcacgaggctgtaaagtcatataacttcatggttatcgctacagacaatggtatgcctactttgcgtggatctgcgatggtaacagttatcacaagaaatgtaaatgacaatgcaccaatgtttatgagtccatgtactaacacgatatctgagctgtcgcctgtgggaatgattgtgctgacctgcaaagcaacggacaaagatatggacacactcacttacagcattaagaattcaagtttattcacagttgacaacaatggggttatcacattaaccaagttgttagactatactacaatgtccagtcataacctaacgcttactgcttcagatggtatacatcaaacgaacactacagtaaggatttatttagtaactggtggtatttgcaggcctttgtttaaccagagtctgtatatacagagcatcagagaagattctcatatcactacaagagtcctgactgttttggcgaacgacccaaggaacaggactttgacttattccatggattcttccagtgatttccaaattaatccaaccacaggagtcataacaaccaagagccttctcgactatcaagtcaaaaatatgtatatgttcaaagtgtatgcttctggcggatcatttattgctgagagtgtcgttgtcgtcaacttgatagatatcaacaacaaagtcccaatccctggacaaatttcatacactgtgcaaatatcagagaaggctgcccttggagctatagttattggcatcaatgctacagatccagatctcaattcaaggctaacatacagcatcaaatcaggaaatattctcgacggcttcagagtagatacaagcggcaggattcgcgtcaacaaagcattggactacgagctactccctacttataccttactggttggtgttaatgatggcattcacgaaaccactgttcgtgttgtcatcaacgtagtagatgtctttgaacctgtaacctgcagcccatgccttgcatgcccattggtatcgacgtatgatttcagtaagcctgcatatatggcaccgatatccgagaacacgacatctggtgcagttattgcgaccgtagagtttaatcaagcagctaaaaatcgactgattgttgggaattattcgatccaagatgcaaaagcaatgatgtattttgaagtcaatcaaactacaggacatgtcacattgaagagcgccctcaatgcagcaactttgctgagcctacgaaaatactccttcacagtttacaatcaattccaatgcagaaaagcagcggcagagatcgtcctggataacaaactgactggatgcaaatttggtttctcaaagaatcattacgaggcttctttgtatgagaatcatgcaatcaatcaagtattcttgactgtacaaacaatgccagcctcctcatcagctatttattcgattgtggaaaacgcagctaaagtgatgtttgatattgacgcagcgacgggacaagtcacattgaagaacgctctcaatgtagcaactctgctgagcctacgaaaatactccttcacagtttacaatcaattccaatgcagaaaagcagcggcagaaatcgtcctggataacaaactgactggatgcaaatttggtttctcaaagaatcattacgaggcttctttgtatgagaatcatgcaatcaatcaagtattcttgactgtacaaacaatgccagcctcctcatcagctatttattcgattgtggaaaacgcagctaaagtgatgtttgatattgacgcagcgacgggtggaatcagcctcaaaacaagcttggattacgaaatgactaagcgacatcagtttacagtcatggccaatgtgacgaacctgatatcatacacgtcagttatcgtgtacgttcttgacattaatgacaactgtccaatggtgacaatcatcggtggcacatactaccaaccagtacaacctggggcaattgttggcattgtggaagttaatgatactgacacattcaagaaccacacttattccataacaaatggagatacccttggtaattttagcatcagcagtaaaggtattgtgacagcaaaaacagtcattacttcaacgaatagaaacatctttaatctggtgatcagcgtcagtgatggcgtatgcccagcagtatcaaaaacattaactgttactgttgacaaagatgttccacccccatgcccaacgccgccatcttgttacaattacacgtgtgcaccatgtgctacaacgcagccactcacaaagtgtccggataagttctgccctggatgcccgatctgcccaacaacaagagcagcatgtccaacaacagcaaccacaactgcttgcccagtaaagacatgtccaacgtgtccttcaacgtgtccggcgactgtaacatgtccagtttgtccgacattgcattgtccagcatgtagagcatttacaacgtatatgttcaaaaagccatattatagtgtggatgtttatgagaatacgacggctccgaaagacttgttgactgtgtctatcagtggtggattggttgctacgtatagcattgtggaatcgaatgctacaacatacttccatattgacccaagctcaggaaagatctcaatgaaggtatcactgaattacacacaacaaaaatcccatcgatttaccgtcagagcaacaataggcagtgaatattcagaagccactgtcgttgttaacgtattggatgtcaatgacaactgcccagtatttactcatgctgaaacaaatacaagactaacaacccccgtcgagagtggcacaattgttgcaattaatagagctactgatgcagataccagtccggcattaacttacagtatcactgcaggggacagcgcagatgaattcgcaatcgacaatatgggtgtcattcgcacgaagaagcgagtcatcattcctggatcaaaaacattcaacttgacaatttatgtaactgatggtgtatgttccgtgaaagcccacgctatcattatcatacatctagacaccatgttcactgtcacgccatcaaaatgcccagttttctgtccggcatgtccgatatgtacgggagctccagttgttgctacgacagcctgtccggttacgtgtgcaacatgtttagctccggctaattatatgtttggactgtctcattattggaccgcactgcttgagaatacaacgtactctcatgctgtcctgactgtgcgactcggtggctcagcatcagctaacttcagcattttggaagctgatgcgttgcagtttttcaacatcagcagaagcacaggtgaaatttatctaatcaaggtccttgactatgaacagatgacacgtcacaacttcacagtcagagcgacctttgcaggaggaataacaagtgacgtagcggtcacaatatacgtcaccaacatcaacgacaaccacccttacttccatagtttaagcatcacaactgcaattcatgaatataccagcattggaacaccagttgcgcaaattaaagcatccgatgtcgactacccgaatagcgtccggttctccattgcgtccggaaacactcacacgttattcggtataaatacaatggacggaatgatcacgttgttaaagaccccctatatgtacactgaaaatagttacaatttgatgattgctgcacaggataccgggggtttaccagcaggttatcaagccactgtgacagtcgacgtaatcaggatgactgttgctcaatctggatgtttccccttcggtagttctgcatacatcatgaagagtatagctgaaaatgtgccaattggaacaatggttactaacctagttccaatgcctgtcgcatcaaacagaaatataatgtactctatcaagaatatagacggacaaacttacttccaaatcaactcaacttcaggcaagataaagacaaaggctttgctggatcatgagaaacaaattatgcatacaatcatcgtcaatgcacacgatccaatcacaaatattaccacgattgcatttgtcgttgtaaacgtcacgaatgtaaatgagcacggcctagttttcacggcaccgacctccgtggtcgtatctgagcttgcaactaaaggagctttcgtagcacaagtcaaagctactgatgctgactccaatacaattattacccaaacaataaccgggggtaacagccatgggttattcgtcatcgatccaatgactggtataatacgtctgaatgcaagtctcaattacaagacctccgcatcgcatatgataactgtctgcgccactgaaacagtctccggtacaaaagcttgcttcaataccacagtcaatgttaagaatgagaacgacggtccgaccacattcgggaagactttgtacacagcaacaacattgctgaactcgactgttggatcagtagtgacgaccgtacaagcgacagatccggacggcctgggaactttgagttataccctgagtggtgcattggctctggaatattttgaaataaatggtacgactggtgtaataacactgaagaaatcattaacaggggctactttaccatcgcctcttgtcataactgcgtgtgctactgatgctgggactccatctactattcattgtgtgccagtcgttgttaatacaggagtaacggcagttacagtgaaaccaaattactacgacccatatttcatcttcagtactaacaatgccgtcatcaacgaaaacgcaacacttggatctaacgtgcttcaactcattgccactgacaatgatacaggtgccgcgggcgctcttcactacaacacacttcaaggaactgaccacgactacttctcaattgatgaaagaactggaataatcagaaacgtgaagtcattgaatagctcattagcaccgaaagttttcttcttacgagcgagtgtcagagatcatggtactccagtacgatattcgactgtagacgcaaatattacgattgctgtattgagaccaagtacacagaataatacgatttcgggtgttacggcattaacgatgactgtttcgctgacgaaagaacccttccttgattcgaagattatcaaatatcaagtaattgcacaggagtacgaccctactgttaagggatttgccgagctgacagcattgcatgcagtttcatggtatttcgtgcatttcattccaaacacttatcaccacagaagatttgtcgttgccactattaccaaaacagcgtcaaagaggaggagaagagccatcacacaagacagcgacaccgttaaatttgatgcaggtaccgaacaaggatgtcagctgaaaacattggaaagtgatgtatgcaatggtccattgatgcctggaaaatcttatcggtttgcacttgttggttactatgacaatactaatccagtcacgggagcattcacagatcctaagacaacat

Transcript

scaffold166.g1.t2

NNNNNNNNNNNCATCCTAAAGAACGGAACCATCAGCCTCGCTCTACACTCAATCACGAGGCTGTAAAGTCATATAACTTCATGGTTATCGCTACAGACAATGGTATGCCTACTTTGCGTGGATCTGCGATGGTAACAGTTATCACAAGAAATGTAAATGACAATGCACCAATGTTTATGAGTCCATGTACTAACACGATATCTGAGCTGTCGCCTGTGGGAATGATTGTGCTGACCTGCAAAGCAACGGACAAAGATATGGACACACTCACTTACAGCATTAAGAATTCAAGTTTATTCACAGTTGACAACAATGGGGTTATCACATTAACCAAGTTGTTAGACTATACTACAATGTCCAGTCATAACCTAACGCTTACTGCTTCAGATGGTATACATCAAACGAACACTACAGTAAGGATTTATTTAGTAACTGGTGGTATTTGCAGGCCTTTGTTTAACCAGAGTCTGTATATACAGAGCATCAGAGAAGATTCTCATATCACTACAAGAGTCCTGACTGTTTTGGCGAACGACCCAAGGAACAGGACTTTGACTTATTCCATGGATTCTTCCAGTGATTTCCAAATTAATCCAACCACAGGAGTCATAACAACCAAGAGCCTTCTCGACTATCAAGTCAAAAATATGTATATGTTCAAAGTGTATGCTTCTGGCGGATCATTTATTGCTGAGAGTGTCGTTGTCGTCAACTTGATAGATATCAACAACAAAGTCCCAATCCCTGGACAAATTTCATACACTGTGCAAATATCAGAGAAGGCTGCCCTTGGAGCTATAGTTATTGGCATCAATGCTACAGATCCAGATCTCAATTCAAGGCTAACATACAGCATCAAATCAGGAAATATTCTCGACGGCTTCAGAGTAGATACAAGCGGCAGGATTCGCGTCAACAAAGCATTGGACTACGAGCTACTCCCTACTTATACCTTACTGGTTGGTGTTAATGATGGCATTCACGAAACCACTGTTCGTGTTGTCATCAACGTAGTAGATGTCTTTGAACCTGTAACCTGCAGCCCATGCCTTGCATGCCCATTGGTATCGACGTATGATTTCAGTAAGCCTGCATATATGGCACCGATATCCGAGAACACGACATCTGGTGCAGTTATTGCGACCGTAGAGTTTAATCAAGCAGCTAAAAATCGACTGATTGTTGGGAATTATTCGATCCAAGATGCAAAAGCAATGATGTATTTTGAAGTCAATCAAACTACAGGACATGTCACATTGAAGAGCGCCCTCAATGCAGCAACTTTGCTGAGCCTACGAAAATACTCCTTCACAGTTTACAATCAATTCCAATGCAGAAAAGCAGCGGCAGAGATCGTCCTGGATAACAAACTGACTGGATGCAAATTTGGTTTCTCAAAGAATCATTACGAGGCTTCTTTGTATGAGAATCATGCAATCAATCAAGTATTCTTGACTGTACAAACAATGCCAGCCTCCTCATCAGCTATTTATTCGATTGTGGAAAACGCAGCTAAAGTGATGTTTGATATTGACGCAGCGACGGGACAAGTCACATTGAAGAACGCTCTCAATGTAGCAACTCTGCTGAGCCTACGAAAATACTCCTTCACAGTTTACAATCAATTCCAATGCAGAAAAGCAGCGGCAGAAATCGTCCTGGATAACAAACTGACTGGATGCAAATTTGGTTTCTCAAAGAATCATTACGAGGCTTCTTTGTATGAGAATCATGCAATCAATCAAGTATTCTTGACTGTACAAACAATGCCAGCCTCCTCATCAGCTATTTATTCGATTGTGGAAAACGCAGCTAAAGTGATGTTTGATATTGACGCAGCGACGGGTGGAATCAGCCTCAAAACAAGCTTGGATTACGAAATGACTAAGCGACATCAGTTTACAGTCATGGCCAATGTGACGAACCTGATATCATACACGTCAGTTATCGTGTACGTTCTTGACATTAATGACAACTGTCCAATGGTGACAATCATCGGTGGCACATACTACCAACCAGTACAACCTGGGGCAATTGTTGGCATTGTGGAAGTTAATGATACTGACACATTCAAGAACCACACTTATTCCATAACAAATGGAGATACCCTTGGTAATTTTAGCATCAGCAGTAAAGGTATTGTGACAGCAAAAACAGTCATTACTTCAACGAATAGAAACATCTTTAATCTGGTGATCAGCGTCAGTGATGGCGTATGCCCAGCAGTATCAAAAACATTAACTGTTACTGTTGACAAAGATGTTCCACCCCCATGCCCAACGCCGCCATCTTGTTACAATTACACGTGTGCACCATGTGCTACAACGCAGCCACTCACAAAGTGTCCGGATAAGTTCTGCCCTGGATGCCCGATCTGCCcaacaacaagagcagcatgtccaacaacagcaaccacaacTGCTTGCCCAGTAAAGACATGTCCAACGTGTCCTTCAACGTGTCCGGCGACTGTAACATGTCCAGTTTGTCCGACATTGCATTGTCCAGCATGTAGAGCATTTACAACGTATATGTTCAAAAAGCCATATTATAGTGTGGATGTTTATGAGAATACGACGGCTCCGAAAGACTTGTTGACTGTGTCTATCAGTGGTGGATTGGTTGCTACGTATAGCATTGTGGAATCGAATGCTACAACATACTTCCATATTGACCCAAGCTCAGGAAAGATCTCAATGAAGGTATCACTGAATTACACACAACAAAAATCCCATCGATTTACCGTCAGAGCAACAATAGGCAGTGAATATTCAGAAGCCACTGTCGTTGTTAACGTATTGGATGTCAATGACAACTGCCCAGTATTTACTCATGCTGAAACAAATACAAGACTAACAACCCCCGTCGAGAGTGGCACAATTGTTGCAATTAATAGAGCTACTGATGCAGATACCAGTCCGGCATTAACTTACAGTATCACTGCAGGGGACAGCGCAGATGAATTCGCAATCGACAATATGGGTGTCATTCGCACGAAGAAGCGAGTCATCATTCCTGGATCAAAAACATTCAACTTGACAATTTATGTAACTGATGGTGTATGTTCCGTGAAAGCCCACGCTATCATTATCATACATCTAGACACCATGTTCACTGTCACGCCATCAAAATGCCCAGTTTTCTGTCCGGCATGTCCGATATGTACGGGAGCTCCAGTTGTTGCTACGACAGCCTGTCCGGTTACGTGTGCAACATGTTTAGCTCCGGCTAATTATATGTTTGGACTGTCTCATTATTGGACCGCACTGCTTGAGAATACAACGTACTCTCATGCTGTCCTGACTGTGCGACTCGGTGGCTCAGCATCAGCTAACTTCAGCATTTTGGAAGCTGATGCGTTGCAGTTTTTCAACATCAGCAGAAGCACAGGTGAAATTTATCTAATCAAGGTCCTTGACTATGAACAGATGACACGTCACAACTTCACAGTCAGAGCGACCTTTGCAGGAGGAATAACAAGTGACGTAGCGGTCACAATATACGTCACCAACATCAACGACAACCACCCTTACTTCCATAGTTTAAGCATCACAACTGCAATTCATGAATATACCAGCATTGGAACACCAGTTGCGCAAATTAAAGCATCCGATGTCGACTACCCGAATAGCGTCCGGTTCTCCATTGCGTCCGGAAACACTCACACGTTATTCGGTATAAATACAATGGACGGAATGATCACGTTGTTAAAGACCCCCTATATGTACACTGAAAATAGTTACAATTTGATGATTGCTGCACAGGATACCGGGGGTTTACCAGCAGGTTATCAAGCCACTGTGACAGTCGACGTAATCAGGATGACTGTTGCTCAATCTGGATGTTTCCCCTTCGGTAGTTCTGCATACATCATGAAGAGTATAGCTGAAAATGTGCCAATTGGAACAATGGTTACTAACCTAGTTCCAATGCCTGTCGCATCAAACAGAAATATAATGTACTCTATCAAGAATATAGACGGACAAACTTACTTCCAAATCAACTCAACTTCAGGCAAGATAAAGACAAAGGCTTTGCTGGATCATGAGAAACAAATTATGCATACAATCATCGTCAATGCACACGATCCAATCACAAATATTACCACGATTGCATTTGTCGTTGTAAACGTCACGAATGTAAATGAGCACGGCCTAGTTTTCACGGCACCGACCTCCGTGGTCGTATCTGAGCTTGCAACTAAAGGAGCTTTCGTAGCACAAGTCAAAGCTACTGATGCTGACTCCAATACAATTATTACCCAAACAATAACCGGGGGTAACAGCCATGGGTTATTCGTCATCGATCCAATGACTGGTATAATACGTCTGAATGCAAGTCTCAATTACAAGACCTCCGCATCGCATATGATAACTGTCTGCGCCACTGAAACAGTCTCCGGTACAAAAGCTTGCTTCAATACCACAGTCAATGTTAAGAATGAGAACGACGGTCCGACCACATTCGGGAAGACTTTGTACACAGCAACAACATTGCTGAACTCGACTGTTGGATCAGTAGTGACGACCGTACAAGCGACAGATCCGGACGGCCTGGGAACTTTGAGTTATACCCTGAGTGGTGCATTGGCTCTGGAATATTTTGAAATAAATGGTACGACTGGTGTAATAACACTGAAGAAATCATTAACAGGGGCTACTTTACCATCGCCTCTTGTCATAACTGCGTGTGCTACTGATGCTGGGACTCCATCTACTATTCATTGTGTGCCAGTCGTTGTTAATACAGGAGTAACGGCAGTTACAGTGAAACCAAATTACTACGACCCATATTTCATCTTCAGTACTAACAATGCCGTCATCAACGAAAACGCAACACTTGGATCTAACGTGCTTCAACTCATTGCCACTGACAATGATACAGGTGCCGCGGGCGCTCTTCACTACAACACACTTCAAGGAACTGACCACGACTACTTCTCAATTGATGAAAGAACTGGAATAATCAGAAACGTGAAGTCATTGAATAGCTCATTAGCACCGAAAGTTTTCTTCTTACGAGCGAGTGTCAGAGATCATGGTACTCCAGTACGATATTCGACTGTAGACGCAAATATTACGATTGCTGTATTGAGACCAAGTACACAGAATAATACGATTTCGGGTGTTACGGCATTAACGATGACTGTTTCGCTGACGAAAGAACCCTTCCTTGATTCGAAGATTATCAAATATCAAGTAATTGCACAGGAGTACGACCCTACTGTTAAGGGATTTGCCGAGCTGACAGCATTGCATGCAGTTTCATGGTATTTCGTGCATTTCATTCCAAACACTTATCACCACAGAAGATTTGTCGTTGCCACTATTACCAAAACAGCGTCAAAGAGGAGGAGAAGAGCCATCACACAAGACAGCGACACCGTTAAATTTGATGCAGGTACCGAACAAGGATGTCAGCTGAAAACATTGGAAAGTGATGTATGCAATGGTCCATTGATGCCTGGAAAATCTTATCGGTTTGCACTTGTTGGTTACTATGACAATACTAATCCAGTCACGGGAGCATTCACAGATCCTAAGACAACAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016339 all species →	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0034332 all species →	Biological Process	adherens junction organization	Interproscan
GO:0044331 all species →	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold166.g1.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.