Detailed information of scaffold166.g9.t1 in Morbakka virulenta

Genomic Location: scaffold166:188270...333735
NR annotation: CAH3031093.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P07996Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
Q28178Thrombospondin-1 OS=Bos taurus OX=9913 GN=THBS1 PE=2 SV=2
P35441Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13306LRR_5BspA type Leucine rich repeat region (6 copies)RepeatInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF13855LRR_8Leucine rich repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026906RepeatBspA-type LRR regionInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR050328FamilyMultifunctional Developmental and Immune ReceptorInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24373SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

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