Gene detail

Detailed information of scaffold1661.g3.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1661:22398...70674
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1661.g3.t2

aaggatacggagcactttttgtcactttgcccttcccttgggttccaacgatgaaaccttcttgctggaaaagtgtggtgaaactaatctgttgtggtttatgcttctagcgttgttttgcattctatgaatttgacacgttctttagaaaccattgaattgattgagttagcgtaaacaaaggacctattatgttttgcgtttaggcgcattagcgcactggagcgtcgctcgattttagtatctagcgaggatgttttgattaaagccttatttaggttaaactgcatttatcttttgcaaactgcaacattatgacaatttaatcaaaaacatcataaacatcatattgacgatgagcaaggcgttgaagccattacgactggatcttgatcctaactctccaaatgctgccaaacaatggaaacactggaaaagaacttttgacaactttatcgaggagtgtggagacannnnnnnnnnnnnnnnggtgcgccaaaataaactatgcacgtttggcaggccacaataaatcgtacactggaccgattttgaagatgtatgacttaatctttagcagaaagcctgaattagattctaggactttttgcaaatttttcctttttcagtttgtagagctagatgcgagcggatttgttcgaaggagatttaaagttgagcaaagaagacattgaccaactgaagggcaatacaatttcaaagaaagataccgttgctgcagctaatcgtagatggcctggcgcaagagttccatataccacagacagaagcttcaatggcaagaatacatcagttgcttttcttattaggtcatcccagaatggatgtcatactggcgttgctggatttgaagttcgatttgacgatgactgcaatccgatgaggatggagagagagaaatatagcgacgatgtttccagactccttcttagtgacgaaattgagattctgaaggttttagaagactacgatataccattacatgtgtattgtccaggaaatttaaaactatctttaagatcagagtgtgaagaatcttcaagatacttctttgacttggtaaaagaatattcatctcagaatttatgcttccttgcatgctttttgtacgacgttactgaatctcctaccaaagcaagatctgaactctgtaccaacaaatggatggaatatgtcggaagtgacaagacaacacatctaggtccttcagatttaaagaaatatcttcacaaacgatgtatgatgatcataagaggatcatcaagcgaggactgcctggatctgttccttctcaaagacatatcttgcttcaatggtgatggcttatatgaattcctttgtcatgagcattccctgtcagctgtcagtggaaatgatgttttggcaggcgaatggaatttacaattgctttcaacgagcgatgtcctgcagtgtcaactaaattatcttgaagaattgtgtcaaaacctaaaagatgcaggaaataaccattatgatccttctaaggtgcgaaagaaatatggattgacacagttgccaagagagcagtcctttgttaaaattggtgatatcttagaggagaaagacagtttcgaatactatgctgcaactatggtgagcccgtcgcagtggctggaacgtcaagcgtggaacaaccaagaaataaatgcatcgatgtctttaagaggatccttaaaacgactgcagtctggagacactcatatgaaactcaagggactaccggtttcagcagaaaagcaaaatcgcggttatactgggaacttttcgcagttgcttgatttatttgacgcatctggtgagcccgtcgtacctgacctcaaaaagattccacttgtcgcagatcgtcttcttaaacagctgccaagtgaagatgtaatcagagacttaggcttctccaaagcaacacagttctttgggcatggcatcgagtattgccttgattctcaaaatgcgctgaaactggatgcaaaactctctcggatacaagacaggttcatatgggaagatacaaaatgtacttggaacttggttcaaaattgcaaattagtcttacggtccgttggagaaccgcaagaaaaagagaacaacgatatttcgaaggagcaaatgccattaccaagcgaaaggcgtaaaaggaaggctagtaaaacttcaagaaaagaagccacgaaaggggaaacgtccccaatacgagctgataaaaaaggtgatgtttgtagtttagcagcaggaaaaaaagacattacagagtcaaacgaaacaacaaaaatgttgaaagatgatgccgcacaacaaagcgatctcttaagagaatcaagatcacaacgacatcgaagaagactgaaggtgatatgtgatgctactttggagaaatatggaagagttagcaaaactgaccctgtgtttgaaaggtgttcagacagattatttacattatgcaaaagctttctcaagacttcatttcccaacactgacatcaaggcaaatcctatgtaaattgctgaccatctcacataaagctcctcagaaattatatttttttttctttattcatattaaaatattacaaatcttacattctactatacgttcctgattactatactacactacagggacgataccatggggagcgaaagactatgactaccccatggccaatatgaaaagacacgcaacgttaaactaaatacaagtacattacgaacgatttaaaaactactggatactatactagattctatcccacatcagatgtcaggtcagggttgcgatcaatgcgagcgccactcgttctagttatttaaggatttgaaaacttcagaaggccttacagctgagatgaaaagaatagcaaaatgcaatgttcaacagggtctgtttcatccagcatgccttgcacgtgccgtctgttgatgttcctttgttgtccaccattttcatggcccatgaaaatggcggttcttaaatttaccgtctccgactttcgaaacgaagtttttgaattataacaatcacggaagcttcttatgtacgacttttcattaactaaactaaaaaagtttcaatactgcatctcctgaattcttgaagaaatggttctgcattaataaatttcatagtggacatatccgtttccctcctctgcggcctgtgaaagcaaatagaaactcagaactcagagaagaaaagcaacggcaaccagagcgaccggggagaagtatgcctcaaatgagatcaatagaccttttagctattc

Transcript

scaffold1661.g3.t2

aaggatacggagcactttttgtcactttgcccttcccttgggttccaacgatgaaaccttcttgctggaaAAGTGTGGTGAAACTAATCTGTTGTGGTTTATGCTTCTAGCGTTGTTTTGCATTCTATGAATTTGACACGTTCTTTAGAAACCATTGAATTGATTGAGTTAGCGTAAACAAAGGACCTATTATGTTTTGCGTTTAGGCGCATTAGCGCACTGGAGCGTCGCTCGATTTTAGTATCTAGCGAGGATGTTTTGATTAAAGCCTTATTTAGGTTAAACTGCATTTATCTTTTGCAAACTGCAACATTATGACAATTTAATCAAAAACATCATAAACATCATATTGACGATGAGCAAGGCGTTGAAGCCATTACGACTGGATCTTGATCCTAACTCTCCAAATGCTGCCAAACAATGGAAACACTGGAAAAGAACTTTTGACAACTTTATCGAGGAGTGTGGAGACANNNNNNNNNNNNNNNNggtgcgccaaaataaactatgcacgtttggcaggccacaataaatcgtacactggaccgattttgaagatgtatgacttaatctttagcagaaagcctgaattagattctaggactttttgcaaatttttcctttttcagtttgtagagctagatgcgagCGGATTTGTTCGAAGGAGATTTAAAGTTGAGCAAAGAAGACATTGACCAACTGAAGGGCAATACAATTTCAAAGAAAGATACCGTTGCTGCAGCTAATCGTAGATGGCCTGGCGCAAGAGTTCCATATACCACAGACAGAAGCTTCAATGGCAAGAATACATCAGTTGCTTTTCTTATTAGGTCATCCCAGAATGGATGTCATACTGGCGTTGCTGGATTTGAAGTTCGATTTGACGATGACTGCAATCCGATGAGGATGGAGAGAGAGAAATATAGCGACGATGTTTCCAGACTCCTTCTTAGTGACGAAATTGAGATTCTGAAGGTTTTAGAAGACTACGATATACCATTACATGTGTATTGTCCAGGAAATTTAAAACTATCTTTAAGATCAGAGTGTGAAGAATCTTCAAGATACTTCTTTGACTTGGTAAAAGAATATTCATCTCAGAATTTATGCTTCCTTGCATGCTTTTTGTACGACGTTACTGAATCTCCTACCAAAGCAAGATCTGAACTCTGTACCAACAAATGGATGGAATATGTCGGAAGTGACAAGACAACACATCTAGGTCCTTCAGATTTAAAGAAATATCTTCACAAACGATGTATGATGATCATAAGAGGATCATCAAGCGAGGACTGCCTGGATCTGTTCCTTCTCAAAGACATATCTTGCTTCAATGGTGATGGCTTATATGAATTCCTTTGTCATGAGCATTCCCTGTCAGCTGTCAGTGGAAATGATGTTTTGGCAGGCGAATGGAATTTACAATTGCTTTCAACGAGCGATGTCCTGCAGTGTCAACTAAATTATCTTGAAGAATTGTGTCAAAACCTAAAAGATGCAGGAAATAACCATTATGATCCTTCTAAGGTGCGAAAGAAATATGGATTGACACAGTTGCCAAGAGAGCAGTCCTTTGTTAAAATTGGTGATATCTTAGAGGAGAAAGACAGTTTCGAATACTATGCTGCAACTATGGTGAGCCCGTCGCAGTGGCTGGAACGTCAAGCGTGGAACAACCAAGAAATAAATGCATCGATGTCTTTAAGAGGATCCTTAAAACGACTGCAGTCTGGAGACACTCATATGAAACTCAAGGGACTACCGGTTTCAGCAGAAAAGCAAAATCGCGGTTATACTGGGAACTTTTCGCAGTTGCTTGATTTATTTGACGCATCTGGTGAGCCCGTCGTACCTGACCTCAAAAAGATTCCACTTGTCGCAGATCGTCTTCTTAAACAGCTGCCAAGTGAAGATGTAATCAGAGACTTAGGCTTCTCCAAAGCAACACAGTTCTTTGGGCATGGCATCGAGTATTGCCTTGATTCTCAAAATGCGCTGAAACTGGATGCAAAACTCTCTCGGATACAAGACAGGTTCATATGGGAAGATACAAAATGTACTTGGAACTTGGTTCAAAATTGCAAATTAGTCTTACGGTCCGTTGGAGAACCGCAAGAAAAAGAGAACAACGATATTTCGAAGGAGCAAATGCCATTACCAAGCGAAAGGCGTAAAAGGAAGGCTAGTAAAACTTCAAGAAAAGAAGCCACGAAAGGGGAAACGTCCCCAATACGAGCTGATAAAAAAGGTGATGTTTGTAGTTTAGCAGCAGGAAAAAAAGACATTACAGAGTCAAACGAAACAACAAAAATGTTGAAAGATGATGCCGCACAACAAAGCGATCTCTTAAGAGAATCAAGATCACAACGACATCGAAGAAGACTGAAGGTGATATGTGATGCTACTTTGGAGAAATATGGAAGAGTTAGCAAAACTGACCCTGTGTTTGAAAGGTGTTCAGACAGATTATTTACATTATGCAAAAGCTTTCTCAAGACTTCATTTCCCAACACTGACATCAAGGCAAATCCTATGTAAATTGCTGACCATCTCACATAAAGCTCCTCAGAAATTATATTtttttttctttattcatattaaaatattacaaatcttacattctactatacgttcctgattactatactacactacagggacgataccatggggagcgaaagactatgactaccccatggccaatatgaaaagacacgcaacgttaaactaaatacaagtacattacgaacgatttaaaaactactggatactatactagattctatcccacatcagatgtcaggtcagggttgcgatcaatgcgagcgccactcgttctagttatttaagGATTTGAAAACTTCAGAAGGCCTTACAGCTGAGATGAAAAGAATAGCAAAATGCAATGTTCAACAGGGTCTGTTTCATCCAGCATGCCTTGCACGTGCCGTCTGTTGATGTTCCTTTGTTGTCCACCATTTTCATGGCCCATGAAAATGGCGgttcttaaatttaccgtctccgactttcgaaacgaagtttttgaattataacaatcacggaagcttcttatgtacgacttttcattaactaaactaaaaaagtttcaatactgcatctcctgaattcttgaagaaatggttctgcattaataaatttcatagtggacatatccgtttccctcctctgcggcctgtgaaagcaaatagaaactcagaactcagagaagaaaagcaacggcaaccagagcgaccggggagaagtaTGCCTCAAATGAGATCaatagaccttttagctattc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14920 all species →	MTBP_C	MDM2-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029418 all species →	Domain	MDN2-binding protein, C-terminal domain	Interproscan
IPR039061 all species →	Family	MDN2-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14382 all species →	MDM2-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0007089 all species →	Biological Process	traversing start control point of mitotic cell cycle	Interproscan
GO:0031396 all species →	Biological Process	regulation of protein ubiquitination	Interproscan
GO:0034501 all species →	Biological Process	protein localization to kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1661.g3.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.