Gene detail

Detailed information of scaffold1663.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold1663:53896...58464
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold1663.g4.t1

ggttgatgattttttgatggaaaactacactcatttttttttataagaaaccgcttataagaaacggtaggctcaatttttcgaaagctaagaaacaaccctacctgaattgaaaaaagctaagaaacttctgcaattttcagttttaattttcctatcacactcaaaaatattttgacattgtgcagttaaagcaactgtttggacattattttgagtgcgaatcatgttatttactcgttttgagattttactaagtaatttgggagccctttagacatgacaaaatcaactctaaacttccggcaataaaaataaaagaaacacgaaagaaacttgtggtatcaaaatggcccaaaaatttaagaaactgcctaccagccccagaccttagtttcttataaaaaagagcgtatttctcaggaatacaaacttttctggtaaagactatttttatccatctagtttatgggagtatcttaaagggaatagacatagctatgtcgacaagctgctataaataggctgaagaaacgcccacaaacccattgtctccttcgccacacaatgaaacggcaggcgtcaaagttgttgaatacaatagattatatttttaacttggcccgggccagcttttaactatgtcgatttcctttaagctccgagagagtaaaggttccttcgctgttgcagagaaagcaatatatgatgggaagagagttgctgtcaagagactaaccgatgcgtctttgagcacagataaaagcattttcgctaaagaggcgctgctgctgaaggaaatagattgtgcaaacatagtaaaactgatcagtgtttctgatgaaccaatggctgtcatgctggaatactgcgaattttcattcaaaccattcaatcatgaaaacagcgttaactctctcgaccaatttttgagttatctggatggcgaggagctctttgcatattttccctctatctgcaatacaattgttgaagatgtgctcgctgcagtcgactttttgcatagtagagatattgttcaccgggacataaaaccagcaaacgtacttgtcagcaatttgcactacgcaaacttgggagttggcagcaacgaaatgttcacgagtcaacccataatttgcaagctggcagacctgggagaagcaaggtcagcagtcactcagacccgtgcattagtgggaaatagccgcactaagtttctggcaaggggtagcccggcctttatggctcccgaaatatctgtagaggagtttatggtaacttcagcaagccttcgacagctgaaagctattgatacctgggcagttatgatgaccatttttgttgttataaatcctgatcagcgctaccctttccaacttgacataacgcgtttactggaggaagatggtaaagaaatcatgaatagtgaacacttacttaaagcttgccttcgtgagaagaagaccccttccttttcagacaaataccttgaaatgcaatctaatcattaccaacgactaaggaagattttctgcgaaaacctccgctataatccaaaccagcgttgtactgtaaaagacctgatcaaacagtcaaaagaagtaagtgatttagttacgatgccacttacagtctctcaagcttcagcattgagtaaaagtgacatggatatgataaatatggtcgatggatgcacggacgagttggcacaaacattgctaccacagaacgacggcacaaactcttgtgcttttctttcgttgggaattatcgatcgtttgctgaaacagagctcgaatagcattataacggatgataatctagtacaggtcatttcggaagttataactaactatccgttgaaattcaaccaataccgtgactccacaaagatggtggatgtctatgaagcttcttcagttttatcaaagaacaatcttctgatccatgaattcgattttgaagagaaaatagtcgacaatgaagcagtctacagttacaactttcaagtgagcgccgttaaagttctggagcattgtcacgaaaaggcaagaaaggaaaagcaaatgcagttcacagtttttcaagctggaatctacattttcgctatcgcaataacagaaactggagaatttatggcttttgagacgcatccgattggggaaaagcttggtggaaatggaaaaggactggtggtcaaaacaacttcaactatagacttcttgcagtggatttcacggcgtttgataacgtctggtgtctcaacaaaatgtactccttacgttatttgtgtggaacaaaagagagaaagaatgccatcccaatgcgatgattcttcacagagagaagcagagaagagtcagaaaacaaataacatagatctgtcagaagaacgtgaaacacagtcaagcgaagacaccggagaatttggacagaaagcagaggaaagcaaaagccaaccatccactcaaaagccaggtgacgattatgtgatcagcagcagctcaagcgatgaactggaaataacaagagttgttaaaaggaggtaggttctgcaaccactaaaaatcatttttcagttattcaatcttcgacaaatatctatatccaaacacgtttaccgatctacctctaccatggccccattgaatagacatctcattgcacaataaggcttgcactgaagtaaagcattggggaactt

Transcript

scaffold1663.g4.t1

GGTTGATGATTTTTTGATGGAAAACtacactcatttttttttataagaaaccgcttataagaaacggtaggctcaatttttcgaaagctaagaaacaaccctacctgaattgaaaaaagctaagaaacttctgcaattttcagttttaattttcctatcacactcaaaaatattttgacattgtgcagttaaagcaactgtttggacattattttgagtgcgaatcatgttatttactcgttttgagattttactaagtaatttgggagccctttagacatgacaaaatcaactctaaacttccggcaataaaaataaaagaaacacgaaagaaacttgtggtatcaaaatggcccaaaaatttaagaaactgcctaccagccccagaccttagtttcttataaaaaagagcgtaTTTCTCAGGAATACAAACTTTTCTGGTAAAGACTATTTTTATCCATCTAGTTTATGGGAGTATCttaaagggaatagacatagctatgtcgacaagctgctataaataggctgaagaaacgcccacaaacccattgtctccttcgccacacaatgaaacggcaggcgtcaaagttgttgaatacaatagattatatttttaacttggcccgggccagcttttaactatgtcgatttcctttaagCTCCGAGAGAGTAAAGGTTCCTTCGCTGTTGCAGAGAAAGCAATATATGATGGGAAGAGAGTTGCTGTCAAGAGACTAACCGATGCGTCTTTGAGCACAGATAAAAGCATTTTCGCTAAAGAGGCGCTGCTGCTGAAGGAAATAGATTGTGCAAACATAGTAAAACTGATCAGTGTTTCTGATGAACCAATGGCTGTCATGCTGGAATACTGCGAATTTTCATTCAAACCATTCAATCATGAAAACAGCGTTAACTCTCTCGACCAATTTTTGAGTTATCTGGATGGCGAGGAGCTCTTTGCATATTTTCCCTCTATCTGCAATACAATTGTTGAAGATGTGCTCGCTGCAGTCGACTTTTTGCATAGTAGAGATATTGTTCACCGGGACATAAAACCAGCAAACGTACTTGTCAGCAATTTGCACTACGCAAACTTGGGAGTTGGCAGCAACGAAATGTTCACGAGTCAACCCATAATTTGCAAGCTGGCAGACCTGGGAGAAGCAAGGTCAGCAGTCACTCAGACCCGTGCATTAGTGGGAAATAGCCGCACTAAGTTTCTGGCAAGGGGTAGCCCGGCCTTTATGGCTCCCGAAATATCTGTAGAGGAGTTTATGGTAACTTCAGCAAGCCTTCGACAGCTGAAAGCTATTGATACCTGGGCAGTTATGATGACCATTTTTGTTGTTATAAATCCTGATCAGCGCTACCCTTTCCAACTTGACATAACGCGTTTACTGGAGGAAGATGGTAAAGAAATCATGAATAGTGAACACTTACTTAAAGCTTGCCTTCGTGAGAAGAAGACCCCTTCCTTTTCAGACAAATACCTTGAAATGCAATCTAATCATTACCAACGACTAAGGAAGATTTTCTGCGAAAACCTCCGCTATAATCCAAACCAGCGTTGTACTGTAAAAGACCTGATCAAACAGTCAAAAGAAGTAAGTGATTTAGTTACGATGCCACTTACAGTCTCTCAAGCTTCAGCATTGAGTAAAAGTGACATGGATATGATAAATATGGTCGATGGATGCACGGACGAGTTGGCACAAACATTGCTACCACAGAACGACGGCACAAACTCTTGTGCTTTTCTTTCGTTGGGAATTATCGATCGTTTGCTGAAACAGAGCTCGAATAGCATTATAACGGATGATAATCTAGTACAGGTCATTTCGGAAGTTATAACTAACTATCCGTTGAAATTCAACCAATACCGTGACTCCACAAAGATGGTGGATGTCTATGAAGCTTCTTCAGTTTTATCAAAGAACAATCTTCTGATCCATGAATTCGATTTTGAAGAGAAAATAGTCGACAATGAAGCAGTCTACAGTTACAACTTTCAAGTGAGCGCCGTTAAAGTTCTGGAGCATTGTCACGAAAAGGCAAGAAAGGAAAAGCAAATGCAGTTCACAGTTTTTCAAGCTGGAATCTACATTTTCGCTATCGCAATAACAGAAACTGGAGAATTTATGGCTTTTGAGACGCATCCGATTGGGGAAAAGCTTGGTGGAAATGGAAAAGGACTGGTGGTCAAAACAACTTCAACTATAGACTTCTTGCAGTGGATTTCACGGCGTTTGATAACGTCTGGTGTCTCAACAAAATGTACTCCTTACGTTATTTGTGTGGAACAAAAGAGAGAAAGAATGCCATCCCAATGCGATGATTCTTCACAGAGAGAAGCAGAGAAGAGTCAGAAAACAAATAACATAGATCTGTCAGAAGAACGTGAAACACAGTCAAGCGAAGACACCGGAGAATTTGGACAGAAAGCAGAGGAAAGCAAAAGCCAACCATCCACTCAAAAGCCAGGTGACGATTATGTGATCAGCAGCAGCTCAAGCGATGAACTGGAAATAACAAGAGTTGTTAAAAGGAGGTAGGTTCTGCAACCACTAAAAATCATTTTTCAGTTATTCAATCTTCGACAAATATCTATATCCAAACACGTTTACCGATCTACCTCTACCATGGCCCCATTGAATAGACATCTCATTGCACAATAAGGCTTGCACTGAAGTAAAGCATTGGGGAACTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR045269 all species →	Family	Serine/threonine-protein kinase Atg1-like	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24348 all species →	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold1663.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.