Gene detail

Detailed information of scaffold167.g17.t1 in Aurelia aurita

Genomic Location: scaffold167:163996...172245
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold167.g17.t1

gttcaaagtgtctatggacaggtaatgttcgagtagttcgagtgaggtatacggaaaattttggttgtaaacggctttggttgaacagtttcaaatataggtggatgttgttgacaaatagaatatatttcatacttgattgcattcgcactactcgcaaagaccaaggtgataaagagggactgaagaaaaagtcattaaaggaaggaaaagcggtgaaaatcgaaacgagaatggggaaagaaagctacattggacttgcgaccatattgttcttatgcataccttatatggttttagcaagcccttacacagacgcactagggcgtgttcgttgtcaactgcatagttataaagttaccgttgagcagcacaactgtcaagcaaaagaggtctgggtaaacacatgcgtaggagtgtgcattgcagcgtctgtgccttcggctgaaggcaatctgcaatcacgttgtgacagttgtaaagtgaaagagtcggtgcaaatatttgttgagctgagctgcagaggttcaataacgaaatttcaccccatgaaagctgcgaagtcgtgtcattgctcattatgttggaaagggaagaagtgaagcattcctagacctggttacttattcgaaatgacacttgacgataatattgaggattttagtgatcaatgatgtaaacttaatgacagcataatgtgtaaagatttgatttagctgatgctccaaccaagggctgatttagacttattacctaagtcccttgtttccctgtgctctttgaattgattgaagttgcttcggtcagcagagactcacaatattgctctgaaaaacttgtatttaggccctcagacacatgaattggtatgttggggacagtcagctcgcaagattcgatgaaatccattgtgattcaagcttcaattgacaatgtgaacttaactctgtatacgtatgctaagttttcgtcattaactgtgtgccaaatgggattttgctgcctttcttttctgcgagctgatagctgagaatgggcgtaggcagggtaatatttttcaccgtttcattgtgattccatgttgagcaaggtttactgcagggatgcaagggacttaggtaatcagtgtagggcagattttataataatatcgttccttgcttttcatcgacacaccagtacaaggtggttagcgatcgctagcaaagaaatttctacagccgactagcctagtggcgaatgtatataaaccaagctgcaagaaatgccttcagacataaattgctaattcgctcattgtgtatgcaaaaaagcgttgttaaaggcccacacagataagtcacgttattgaattgcaatgtattttctctctctcttttttgcttacgttcgtaatgggcctagccattacgtagccaaggctatgagcagtgcagaaaactgtcaagtatttccttacctgccttaaagacactggcttggttagacggtagaacatttgaatagcgtttctatgatggctggtggtttttggctctgttgtgtcttgtttactgccatcttgaccaccacaagtttgcttcggtttcctgtacctaactgaactgaatgtaaattcagatttgtatatgacccatccatgtgcgcttttaagataaggcagaagaacacaaaggaagacgggtgtatctaaacatctgcagcctcagttttatttatctcatcggcagatttggcattaccattctgatattgtttgtgtgcaattgaatatttaatgctcagctggattagatgaataaattgaggctgcagttttatacagttcttatccttcttcattcgatacatatgattttgctcaacaagcccttttcgcatgcacaacgagtgagttatcattccagtttcctgggcatcttttgcggtttactttatttacatttttcccggctaatcggccgtaggatgcctttttcaatcgctaattgctttgtagggtcgcgttagtaaaaagcaacataatcaattgtttccaaatctgccgttgttgacgctccatagatgtgtgtgtgcgggtgaccagtcgacgaaacttgcttttctccaagctatttgcataagattctgccgtttttgcattgtctttgccgtgtaactttttttgtaaaatcccgagctctttaagttctgtaacttttcctgcatgcatatttagcatctttaccccaaatttcatcaagatatctctttttttttcaaatagagaaatttttcccagacagtagtttagaaatttcgtgagtaagaaaattgaacacaattttcacttcaattagcaatcaatgagagaagataaagataaagaaaatgtaatagttttgatttttggggtcaatcagcaataaaattctgcgagcaggaaagtcggtcttaaggaatcgtgtattcttagtttatccttagccgaggtaatttgttttggatcaggttgcccggtattacaattttgtaagggacatgaaaatagttgtaattaagcatttattcaaggcttgttattttcttatattgtcaggataatgcaaagagacggaatgccttccatactacatgagtaatgcctctatttatttttggaatctttgcaaaccgcgcggtcataatgatagtttttgctgtgtgagcccaacaatgagaattttggaagattcttccagaccagaatttataccaatgaacagcattttgatcttcggcacatagcttttttcatgtacacctgaaatgcggcctaaatgttgttttgcgcattaccatttttattcaagctgcgaaagtttttagcttcatttttagggtgtgtttgattggtaattccaaacctaccaaattctgaaaacagtagacttcgcagagacggaaatatatttcccaatcaaacacaaaaatcttcaaacagcaggtttcggattcaccaccagggattagctaatgaaaatgagaatctctccaaagtctgccaaaccttctgaattttggagcagaaggttcagaaggccttccaaacctaccgtttccagaattttggggccaatcaaacgcgaatttcgagtctaccaagtctaccgttttcagaattgataccaatcaaacacacccttaatttcacacgaggttgcattttggcatagtcaactttattataaaattcgaattgacaaaagatagttctgctagaattttgggcaatttcaatgtatgctttaaaaccagctagctaataaaaccttagaattttgctaattgaaggctgttgataggataatctatatggctaaatttaattcgacctttgatgaacacctcgaatagaaatattcgtgattg

Transcript

scaffold167.g17.t1

GTTCAAAGTGTCTATGGACAGGTAATGTTCGAGTAGTTCGAGTGAGGTATACGGAAAATTTTGGTTGTAAACGGCTTTGGTTGAACAGTTTCAAATATAGGTGGATGTTGTTGACAAATAGAATATATTTCATACTTGATTGCATTCGCACTACTCGCAAAGACCAAGGTGATAAAGAGGGACTGAAGAAAAAGTCATTAAAGGAAGGAAAAGCGGTGAAAATCGAAACGAGAATGGGGAAAGAAAGCTACATTGGACTTGCGACCATATTGTTCTTATGCATACCTTATATGGTTTTAGCAAGCCCTTACACAGACGCACTAGGGCGTGTTCGTTGTCAACTGCATAGTTATAAAGTTACCGTTGAGCAGCACAACTGTCAAGCAAAAGAGGTCTGGGTAAACACATGCGTAGGAGTGTGCATTGCAGCGTCTGTGCCTTCGGCTGAAGGCAATCTGCAATCACGTTGTGACAGTTGTAAAGTGAAAGAGTCGGTGCAAATATTTGTTGAGCTGAGCTGCAGAGGTTCAATAACGAAATTTCACCCCATGAAAGCTGCGAAGTCGTGTCATTGCTCATTATGTTGGAAAGGGAAGAAGTGAAGCATTCCTAGACCTGGTTACTTATTCGAAATGACACTTGACGATAATATTGAGGATTTTAGTGATCAATGATGTAAACTTAATGACAGCATAATGTGTAAAGATTTGATTTAGCTGATGCTCCAACCAAGGGCTGATTtagacttattacctaagtcccttgtttccctgtgctctttgaattgattgaagttgcttcggtcagcagagactcacaatattgctctgaaaaacttgtatttaggccctcagacacatgaattggtatgttggggacagtcagctcgcaagattcgatgaaatccattgtgattcaagcttcaattgacaatgtgaacttaactctgtatacgtatgctaagttttcgtcattaactgtgtgccaaatgggattttgctgcctttcttttctgcgagctgatagctgagaatgggcgtaggcagggtaatatttttcaccgtttcattgtgattccatgttgagcaaggtttactgcagggatgcaagggacttaggtaatcagtgtagggcagattttataataatatcgttccttgcttttcatcgacacaccagtacaaggtggttagcgatcgctagcaaagaaatttctacagccgactagcctagtggcgaatgtatataaaccaagctgcaagaaatgccttcagacataaattgctaattcgctcattgtgtatgcaaaaaagcgttgttaaaggcccacacagataagtcacgttattgaattgcaatgtattttctctctctcttttttgcttacgttcgtaatgggcctagccattacgtagccaaggctatgagcagtgcagaaaactgtcaagtatttccttacctgccttaaagacactggcttggttagacggtagaacatttgaatagcgtttctatgatggctggtggtttttggctctgttgtgtcttgtttactgccatcttgaccaccacaagtttgcttcggtttcctgtacctaactgaactgaatgtaaattcagatttgtatatgacccatccatgtgcgcttttaagataaggcagaagaacacaaaggaagacgggtgtatctaaacatctgcagcctcagttttatttatctcatcggcagatttggcattaccattctgatattgtttgtgtgcaattgaatatttaatgctcagctggattagatgaataaattgaggctgcagttttatacagttcttatccttcttcattcgatacatatgattttgctcaacaagcccttttcgcatgcacaacgagtgagttatcattccagtttcctgggcatcttttgcggtttactttatttacatttttcccggctaatcggccgtaggatgcctttttcaatcgctaattgctttgtagggtcgcgttagtaaaaagcaacataatcaattgtttccaaatctgccgttgttGACGCTCCATAGATGTGTGTGTGCGGGTGACCAGTCGACGAAACTTGCTTTTCTCCAAGCTATTTGCATAAGATTCTGCCGTTTTTGCATTGTCTTTGCCGTGTAACTTTTTTTGTAAAATCccgagctctttaagttctgtaacttttcctgcatgcatatttagcatctttaccccaaatttcatcaagatatctctttttttttcaaatagagaaatttttcccagacagtagtttagaaatttcgtgagtaagaaaattgaacacaattttcacttcaattagcaatcaatgagagaagataaaGATAAAGAAAATGTAATAGTTTTGATTTTTGGGGTCAATCAGCAATAAAATTCTGCGAGCAGGAAAGTCGGTCTTAAGGAATCGTGTATTCTTAGTTTATCCTTAGCCGAGGTAATTTGTTTTGGATCAGGTTGCCCGGTATTACAATTTTGTAAGGGACATGAAAATAGTTGTAATTAAGCATTTATTCAAGGCTTGTTATTTTCTTATATTGTCAGGATAATGCAAAGAGACGGAATGCCTTCCATACTACATGAGTAATGCCTCTATTTATTTTTGGAATCTTTGCAAACCGCGCGGTCATAATGATAGTTTTTGCTGTGTGAGCCCAACAATGAGAATTTTGGAAGATTCTTCCAGACCAGAATTTATACCAATGAACAGCATTTTGATCTTCGGCACATAGCTTTTTTCATGTACACCTGAAATGCGGCCTAAATGTTGTTTTGCGCATTACCATTTTTATTCAAGCTGCGAAAGTTTTTAGCTTCATTTTTagggtgtgtttgattggtaattccaaacctaccaaattctgaaaacagtagacttcgcagagacggaaatatatttcccaatcaaacacaaaaatcttcaaacagcaggtttcggattcaccaccagggattagctaatgaaaatgagaatctctccaaagtctgccaaaccttctgaattttggagcagaaggttcagaaggccttccaaacctaccgtttccagaattttggggccaatcaaacgcgaatttcgagtctaccaagtctaccgttttcagaattgataccaatcaaacacacccTTAATTTCACACGAGGTTGCAttttggcatagtcaactttattataaaattcgaattgacaaaagatagttctgctagaattttgggcaatttcaatgtatgctttaaaaccagctagctaataaaaccttagaattttgctaattgaaggctgttgataggataatctatatggctaaatttaattcgacctttgatgaacacctcgaatagaaatattcgtgattg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03045 all species →	DAN	DAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR006207 all species →	Domain	Cystine knot, C-terminal	Interproscan
IPR004133 all species →	Domain	DAN	Interproscan
IPR052680 all species →	Family	Glycoprotein Hormones Alpha Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31129 all species →	GLYCOPROTEIN HORMONE ALPHA-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0051427 all species →	Molecular Function	hormone receptor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25483	GPHA2; glycoprotein hormone alpha-2	-	Cytokines and neuropeptides	ko04052	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.