Gene detail

Detailed information of scaffold167.g19.t1 in Aurelia aurita

Genomic Location: scaffold167:189866...212135
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold167.g19.t1

cgaaatagtaacgaggctattcgtcgttgttgttgtcatgaatttatttcttgttgcttcgtgcttcgcgaattttgttggaaagcagcaagattgccttggcagcttgaaacggtgaggccgtcaagtttttaaccatgcttgaactaaggtacagctgattttaaatattttttaatggcacaaaatttttaaagaaattttataacattcacttgccgccaacaacaggcgaaggactccaagaagtgtgaaacagccaaacacaaaaagaagaatacaacgtcaacgaacgaggatcagaatgctttggactgtcagtttgaccactgggccaaggcgagtgaaccatgcagctgtaggtgtctcagagaagcgactgctgttctcatttggaggttattgtacgggagaagaatggaatcagatcgagaaaatggatgttcatattttcaatgtttccaccctgcaatggaacaaattaaagaccccatcaatagtagacagtaactacaattctataccatacatgagatatggacacactgcatcaataattggccataaagtttacatctttggtggaaggaatgacaattatggtgcatgcaacacattgtattgctttgatacagatacactgaagtggacaaggccagcagtttatggttatcctcctgaagcaagagatggacattcagcttgtgtcattcaaacaaagatttacatttttggaggatttaaagagatcgatgagcaattttcatctgatctgttttacttggagacaacaacaatgacgtggcatcagcccaaaacgcaatctgtaaacatatggagagattttcatacttctacttcagttggaatgagcatttacattttcggaggtagaggcgatcgtcgtggcccaatacacactaatgaagaagtgtatgacaatactatataccaatttgatactgaaaaattaaagtggtcatcgataagagtcaaaggaaaatcgccaatcggaaggagaagtcacgctgctattgcttacaaagatgatatctacatatttggaggatacaatggccaaatcaagaagcatttttcagacatgtggaaatttgacttagcgaggaaatgttggactgaagttaaggcgcaaggaatcccaccatgtgcaaggcggcgtcattcatggagtgttcttggaaatgaagctgttctctttggtggcacatgtccatcaccaaatcctcgaccgtttgaaaatcaagatcatgacgcattacacaatttacaagatttatctgatgtttatgtcttcgacttcagcccaagtttaacaacattatgcaaaagagctgtgttagcatataatatcgattgttctgaacttccataccaaatacgagctgaactcgagtcaataaaaaaggagagtagtcgaaatcgctgcctatctggaatgacacaaggctaatattcacactgatgcccagtcgagatgaaatcctatggggatgaagtgattccttagttaccatcagccttgaaatcgtccatcgtaatgccgagctggccttgtacatacagtggtaagtcaaccagggctcttaagagtaatgcgcaaggccgtattcccattagagttaacaaatgctcgctacactttaattttatgattgaggtaacagaggagttgaatcaaagatcatttggtcggatctttaaaaaggctagtgtaaatagtttttatatctttggattgaatggcttcaccggaactttatgtaattttccataattccagagtgcggatttctggtatcgttatcatgttcagaattacagcgtttttacgttctatgcaaggaaagctgaactcgagtcaataaaaaaggagagtagtcgaaatcgctgcctatctggaatgacacaaggctaatattcacactgatgcccagtcgagatgaaatcctatggggatgaagtgattccttaattaccatcagccttgaaatcgtccatcgtaatgccgagctggccttgtacatacagtggtaagtcaaccagggctcttaagagtaatgcgcaaggccgtattcccattagagttaacaaatgctcgctacactttaattttatgattgaggtaacagaggagttgaatcaaagatcatttggtcggatctttaaaaaggctagtgtaaatagtttttatatctttggattgaatggcttcaccggaactttatgtaattttccataattccagagtgcggatttctggtatcgttatcatgttcagaattacagcgtttttacgttctatgcaaggaagtatgcaaggctgctctaaagctttgacaaacattgaaagcaccataacatctaaatttattgggagaaatatagcagaattctctagaaaaccttagttttatgaaggttcacaatatggttgtaagcaaaagtctgtagcttttctggcttacgatttggcaatttgatgacgtgtcaacttcaaaactatcaggaagaccaaaaacgttattgttctgaaagtaataatgatattaaatacccgcattctggaattatggtaagttacataaagcttctttcaagccattcaatccagagaaatatgtaataaccattttacgctaagcctttttgaagattcgacccctacattattaaggtttaggtctaatttagttctgtgtttagttttataaggtatatttctcaggggtgtattgatgtgttggcagtaagaagactctatgctgggattctgtgaaagagacttgaccagcatctaatgacaccaaagaatataccatgtagacgagaaaataagggtatctgatatataagggcatgcctttatacccgaatattaaggtagtgcccttaacaaaataccagtagatgcactgatgttactgattttcattgattattgctaaatagtctcaaaagggcagtttttgctagatagaatagatagggatggaaaccctataagaacatgccttgatatacaggcctctataaatgctttttgtgcctgggaacacaatttaagcttgcaaaggaacgcttaattgtaccagcttgctaacaaaggaacactttaatgtgctcgccggaaataacgggtgtcccccttttccacgatgtgcctgggaacctccgggtaagtcaataaaaacaatcccagtttgaaagggcactgctctctggatatcaagacgataatattggcaaatatattatttaatggtggacatgttcaaatcgattataaaatttacctgactga

Transcript

scaffold167.g19.t1

CGAAATAGTAACGAGGCTATTCGTCGTTGTTGTTGTCATGAATTTATTTCTTGTTGCTTCGTGCTTCGCGAATTTTGTTGGAAAGCAGCAAGATTGCCTTGGCAGCTTGAAACGGTGAGGCCGTCAAGTTTTTAACCATGCTTGAACTAAGGTACAGCTGATTTTAAATATTTTTTAATGGCACAAAATTTTTAAAGAAATTTTATAACATTCACTTGCCGCCAACAACAGGCGAAGGACTCCAAGAAGTGTGAAACAGCCAAACACAAAAAGAAGAATACAACGTCAACGAACGAGGATCAGAATGCTTTGGACTGTCAGTTTGACCACTGGGCCAAGGCGAGTGAACCATGCAGCTGTAGGTGTCTCAGAGAAGCGACTGCTGTTCTCATTTGGAGGTTATTGTACGGGAGAAGAATGGAATCAGATCGAGAAAATGGATGTTCATATTTTCAATGTTTCCACCCTGCAATGGAACAAATTAAAGACCCCATCAATAGTAGACAGTAACTACAATTCTATACCATACATGAGATATGGACACACTGCATCAATAATTGGCCATAAAGTTTACATCTTTGGTGGAAGGAATGACAATTATGGTGCATGCAACACATTGTATTGCTTTGATACAGATACACTGAAGTGGACAAGGCCAGCAGTTTATGGTTATCCTCCTGAAGCAAGAGATGGACATTCAGCTTGTGTCATTCAAACAAAGATTTACATTTTTGGAGGATTTAAAGAGATCGATGAGCAATTTTCATCTGATCTGTTTTACTTGGAGACAACAACAATGACGTGGCATCAGCCCAAAACGCAATCTGTAAACATATGGAGAGATTTTCATACTTCTACTTCAGTTGGAATGAGCATTTACATTTTCGGAGGTAGAGGCGATCGTCGTGGCCCAATACACACTAATGAAGAAGTGTATGACAATACTATATACCAATTTGATACTGAAAAATTAAAGTGGTCATCGATAAGAGTCAAAGGAAAATCGCCAATCGGAAGGAGAAGTCACGCTGCTATTGCTTACAAAGATGATATCTACATATTTGGAGGATACAATGGCCAAATCAAGAAGCATTTTTCAGACATGTGGAAATTTGACTTAGCGAGGAAATGTTGGACTGAAGTTAAGGCGCAAGGAATCCCACCATGTGCAAGGCGGCGTCATTCATGGAGTGTTCTTGGAAATGAAGCTGTTCTCTTTGGTGGCACATGTCCATCACCAAATCCTCGACCGTTTGAAAATCAAGATCATGACGCATTACACAATTTACAAGATTTATCTGATGTTTATGTCTTCGACTTCAGCCCAAGTTTAACAACATTATGCAAAAGAGCTGTGTTAGCATATAATATCGATTGTTCTGAACTTCCATACCAAATACGAGCTGAACTCGAGTCAATAAAAAAGGAGAGTAGTCGAAATCGCTGCCTATCTGGAATGACACAAGGCTAATATTCACACTGATGCCCAGTCGAGATGAAATCCTATGGGGATGAAGTGATTCCTTAGTTACCATCAGCCTTGAAATCGTCCATCGTAATGCCGAGCTGGCCTTGTACATACAGTGGTAAGTCAACCAGGGCTCTTAAGAGTAATGCGCAAGGCCGTATTCCCATTAGAGTTAACAAATGCTCGCTACACTTTAATTTTATGATTGAGGTAACAGAGGAGTTGAAtcaaagatcatttggtcggatctttaaaaaggctagtgtaaatagtttttatatctttggattgaatggcttcaccggaactttatgtaattttccataattccagagtgcggatttctggtatcgttatcatgttcagaattacagcgtttttacgttctatgcaaggaaAGCTGAACTCGAGTCAATAAAAAAGGAGAGTAGTCGAAATCGCTGCCTATCTGGAATGACACAAGGCTAATATTCACACTGATGCCCAGTCGAGATGAAATCCTATGGGGATGAAGTGATTCCTTAATTACCATCAGCCTTGAAATCGTCCATCGTAATGCCGAGCTGGCCTTGTACATACAGTGGTAAGTCAACCAGGGCTCTTAAGAGTAATGCGCAAGGCCGTATTCCCATTAGAGTTAACAAATGCTCGCTACACTTTAATTTTATGATTGAGGTAACAGAGGAGTTGAATCAAAGATCATTTGGtcggatctttaaaaaggctagtgtaaatagtttttatatctttggattgaatggcttcaccggaactttatgtaattttccataattccagagtgcggatttctggtatcgttatcatgttcagaattacagcgtttttacgttctatgcaaggaagtatgcaaggctgctctaaagctttgacaaacattgaaagcaccataacatctaaatttattgggagaaatatagcagaattctctagaaaaccttagttttatgaaggttcacaatatggttgtaagcaaaagtctgtagcttttctggcttacgatttggcaatttgatgacgtgtcaacttcaaaactatcaggaagaccaaaaacgttattgttctgaaagtaataatgatattaaatacccgcattctggaattatggtaagttacataaagcttctttcaagccattcaatccagagaaatatgtaataaccattttacgctaagcctttttgaagattcgacccctaCATTATTAAGGTTTAGGTCTAATTTAGTTCTGTGTTTAGTTTTATAAGGTATATTTCTCAGGGGTGTATTGATGTGTTGGCAGTAAGAAGACTCTATGCTGGGATTCTGTGAAAGAGACTTGACCAGCATCTAATGACACCAAAGAATAtaccatgtagacgagaaaataagggtatctgatatataagggcatgcctttatacccgaatattaaggtagtgcccttaacaaaataccagtagatgcactgatgttactgattttcattgattattgctaaatagtctcAAAAGGGCAGTTTTTGCTAGATAGAATAGATAGGGATGGAAACCCTATAAGAACATGCCTTGATATACAGGCCTCTATAAATGCTTTTTGTGCCTGGGAACACAATTTAAGCTTGCAAAGGAACGCTTAATTGTACCAGCTTGCTAACAAAGGAACACTTTAATGTGCTCGCCGGAAATAACGGGTGTCCCCCTTTTCCACGATGTGCCTGGGAACCTccgggtaagtcaataaaaacaatcccagtttgaaagggcactgctctctggatatcaagacgataatattggcaaatatattatttaatggtggacatgttcaaatcgattataaaatttacctgactga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25808	KLHDC3; kelch domain-containing protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.